Pvar002900.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- hang
- Assembly
- GCA_001014415.1
- Location
- JXPM01010738.1:41378-55955[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.038 3.1 8.4 1.0 2 23 251 273 251 273 0.94 2 14 0.089 7.4 7.2 3.4 3 22 379 398 377 398 0.90 3 14 0.00043 0.036 14.5 3.9 1 23 465 488 465 488 0.91 4 14 0.00068 0.057 13.9 0.2 3 23 650 671 649 671 0.96 5 14 0.00031 0.026 15.0 0.1 1 23 679 702 679 702 0.98 6 14 0.00021 0.017 15.5 0.1 2 23 807 828 806 828 0.97 7 14 0.00076 0.063 13.8 3.0 2 23 902 924 901 924 0.93 8 14 0.012 1 9.9 0.8 2 23 933 955 932 955 0.95 9 14 0.00022 0.018 15.5 0.2 1 23 968 991 968 991 0.97 10 14 7.2e-05 0.006 17.0 1.1 1 23 1055 1077 1055 1077 0.99 11 14 0.0011 0.092 13.2 0.9 1 23 1085 1108 1085 1108 0.96 12 14 0.08 6.7 7.4 0.2 2 19 1116 1133 1115 1134 0.94 13 14 1.9e-05 0.0016 18.8 0.2 3 23 1217 1237 1216 1237 0.98 14 14 9.8e-05 0.0082 16.5 0.3 1 23 1272 1294 1272 1294 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAGGAGAATCTGCTGCGTGCGCGACAAAACTGCTGTCGCCTGTGCCTCGCGCCACAAACCGAGTGCATTTCGATCATTAATAGCTATGCCGCCGATAGAGAACCACTGgccacaaaaatacaaaactgcGTCAATATCAAGATTACACCAAATGATCGACTATCGTTACATATTTGCCACGCCTGCATAAGTTATTTGAATTCGTggcaaagttttaaaaatcgTTGCGTTTCATCGCAAAGTAAACAACGCAATTGGCTTgatgcaaataaacaacaacaattgttagaCAATAATGTTAGTATATCGGAGGTAAACAATACGACAGGcggtaacaacaataataacaacaacaacagcaacaacaatagtgcAACTGGCGTCGGCGGTGAGAATGGCGAACAAGATGATGAATCACTGGATAGGACAACGAATATATTGGAGGGCATAACATCGTTGAAGAAACGCAAATCGTTAACAGTTTATCCGCTGCCAGCAATGCCGATCAAAGATGAGCCCATGGATACGGATGATGAGTATAATGCTAAACATGAGGAATCCGATGAAATGGTCGATCCGACACTATTTCTGGAACGTGTCGAACATGAAGGCGATGTGCCCATAATGGATGGTGGTAACTACGATTATAGCGCTCAACGTACGGCAGCTGCCGCAGTTGCGGCAGCATCGTTGCCACCCGCAACGGTTGCCAATGTAGCCGCTGCCGGTGATAATAAGGTCGCACAATGTCGCGCATGCAATTTACAATTCTCGACGCGGGCCAATGCACGACGTCATGAACGTAATTTGCATCCAAATCTGTTTGAGCTCTCCCTGGAATCGCCAAATAATACGCCCATCACAAAGCCAACACCGGCGCTGGCGGCCGCATTGGAATTACAACGTGCTGCCACAGCAGCGGCAACCATTGAGGCAACAAAAGCGGCTGCCACGGGCACCATAACACCGCAAAAATATCGCCAAGAAGTTATGAATGCCTTTAATAAATGTGAGGGCGGCGGCTATGATTATGATAATCCTGAAAAGTATCAACATCTATTGAATGATGAGAAAATTGCATTCATTCAACAGAACAGTGAGTTCCTCGAACAGTATCAGACCATGACCTGTCGCTGTTGCAGCAAGAATTTTACCACATATAAGAATTTTATGGCGCACATAcgtaaaaaatattcaacattgCCGcgtaatttgtgttttaattgcTTGAAACAGAATGAATCGAAGGCTTTATTCATATCGCATCTAAAGAAACGAAACTGTATAAATTTGTATCGCTTGCTAAATAATTTGTCAACGAAAAATAATCCAAATTCGGCAACGCCGGAACGTATGCGTGCCAAAGAGTTGCTCATCAATAAAATGTACGAATGTAAATTGTGTCCAAAACAATTTCGTACAAAGCATGAATTTCGTACGCATGTCTATGAACGGCATGCGGATGTGCAGCGCAAGGATAATGCATCGATACAGTGCAGTTTTTGTAGTCTGGAAATTGCCGATCCGGTCGATCGTAAGCGTCATTATAACAATATGGATTGCATTGTTTCGTTACGTTGTGTGACATGCAAGGGCAACTTTGATAATCATCAACGTTTTCTCGATCATGTCTATCACGATCATTTGGGCGGCATGAGTGATAATTCGTCGTCGAGAAGCGTGCTTTTGGCACGTCAGACAAGTGCTGAAAATTCACCTGGAAAGCGTAGTCTAAGCGCAACTGGCGTTGGCGGTGGTACAACAGGCGGCGGTGGAACTGCTgctggcggtggcggtggtggtgGCGCTTCATCCAATGATGAGTCACACAGCAGCGGTATGGCGCTTACATCAACGCCGACTGTCGCTGTAACTGCAAATGTGCATGGTAGCCAACAAACACCAGCCAAGTCCCAGTATTTTTCGCGTATGCCACAAGCGTGTCCAATATGCGGTCAACAAtataataactacaacaatgtGCTGCGTCATATGGAATCGAAACATCCAAATAACCTGCCAGAGACATATAAATGCGTACGTTGCGCCACCGGTTTTCCGCGTATATCCAATTTACGTGAGCATATGATAACCGCGCATGGCACTGATCGAAATCGTATATCCGGTGGGTTCGAGTATATTGTCAATGCGGATGCGTTAAAACTGATTGATGGCAGCGGCGGTGGGACAGCGAATGTCTATTCGGGTCGTTATGACTACGTCATGAAAGATTTGATGTCTATTAATGGTGGGACACTCGatgatgatgatgatgatacgGACAGCAATGCTGCTAAGCGTTTACGCTTAGATACAAGCTTACCAACAGCAACCGTTACATCGGGCAGCGgtgtcagcagcaacaataacaacagcagcaacagcaatgttaaTCTACAAAGCAGTCAAAAGGAGTGTCCCGTGTGTTTTGCCGTCTTCAATAATAACATTGGCCTATCGAATCATATGCGTTCACATACGGCTGCAGCAGCGAATGCCGCCAATGCAGCTGCACTCGCTCAAGCAAATCGCATGACACCGAAATCACTAACCATAACAGCAACGCCATCAACGACGGCCACATTGTCGAATGCTGCCAGTGATGCATTGAATGCAACACAAACGGTTACGGCCGCACAGGAGGCACACTATCGTCGTGGTTTTGAACAGGCGGCGGACAGACGTTTCCGTCGTATGCGCTGTCAGATCTGTCAGCGTCGTTTCTCATCAAAGAAATCATATCGTTATCATATGTTCAATGATCATCAAATACGTAAtgtacaatttattaaatgtaaacTTTGCAACGCTGATTTTGCACACGAAAAGGGCTTGAAGGTGCATTTGTTTAAGGTGCATAATACATTAATCAAGGACGATATGATTATTAAGCAATTTGAGTGCGATATTTGTTCGATTGTTTATACATCCGAGTCAGAATTGTTGCAACATAAAAAGAGCATACATGGCGCTGAAGATGCACAGGCCGGTGATGTCGATATGGATGAGACGGCGGGCGCACATGATGCAACGGCCATTAGTTCGGCCAATCTGTCGGGCATTTCGACACCTGTCAGCGGCGTCAACAATACAAATACTTCGATTACGTCGACATTGACAACTGGTGATGGCACAGTCACTGGACCGCTTTACTGGTATCAGTGCAAGTATTGTCCCTCAAACTTCAATACCAATAAAAAACTGGCCATACACATTAATTCGCATGATGAATTCGATTCAAAGGATTATTCATGCAAGGATTGCGGTAATGTTTACAGCGGACGTAAGAGTCTTTGGgTTCATCGTTACAAGAAACATCCACAGATTGCTGAGCCCTCTGAGTGCGTACTATGTCGTAAAGTTTTCTTTGACCGTCAGATGTTGGAGAATCATACACCGACCTGTAATCGCAAACCGATTACGGCAACGGGCGCTCTAGCGGAAACGGTGGCGCCAACATTGAGCAGACCCTTTTACAAGCACAAAACGGGcgacgatgaagatgatgatgatgaagatggcGGCAGTGATAGTAACAGTGGTGCGGCTGGCACAGTTGTTGGCACACTAGGCGGTGGCGAAGTTGAAGTTTCGACCATGCCCAGCACAACATCGCTAAAGTTTAAAATACCAGAGGTTGCGTGCACAATATGCGGTGCACGTTTCAGTGATCAGGATTTGTTTGCCAAACATATACAGCGTCATGAACAGGAGCTCTATACTGATAATCCATTGGCGGCTATGTTCGATGATGGACCGAGCGATCcgaatcaattttatttagatCGTGTCAATGATAATGGCGAGTACGCTTGCGATATCTGCGCAAAGACATTTACCCAGATGACCGCACTTAAAGTGCATCGTAAATGGCATTTCAGAGGTGATAGCAAACAGGTGAGCTTTTTGGGCTTGTGCAGCGAGGTGCCTTAcataagcaacagcaacattctCAGAGTGATAAAAATAgacgataataatgatgatgatgatgaagaagaagatagaaACTAA
- Protein Sequence
- MSEENLLRARQNCCRLCLAPQTECISIINSYAADREPLATKIQNCVNIKITPNDRLSLHICHACISYLNSWQSFKNRCVSSQSKQRNWLDANKQQQLLDNNVSISEVNNTTGGNNNNNNNNSNNNSATGVGGENGEQDDESLDRTTNILEGITSLKKRKSLTVYPLPAMPIKDEPMDTDDEYNAKHEESDEMVDPTLFLERVEHEGDVPIMDGGNYDYSAQRTAAAAVAAASLPPATVANVAAAGDNKVAQCRACNLQFSTRANARRHERNLHPNLFELSLESPNNTPITKPTPALAAALELQRAATAAATIEATKAAATGTITPQKYRQEVMNAFNKCEGGGYDYDNPEKYQHLLNDEKIAFIQQNSEFLEQYQTMTCRCCSKNFTTYKNFMAHIRKKYSTLPRNLCFNCLKQNESKALFISHLKKRNCINLYRLLNNLSTKNNPNSATPERMRAKELLINKMYECKLCPKQFRTKHEFRTHVYERHADVQRKDNASIQCSFCSLEIADPVDRKRHYNNMDCIVSLRCVTCKGNFDNHQRFLDHVYHDHLGGMSDNSSSRSVLLARQTSAENSPGKRSLSATGVGGGTTGGGGTAAGGGGGGGASSNDESHSSGMALTSTPTVAVTANVHGSQQTPAKSQYFSRMPQACPICGQQYNNYNNVLRHMESKHPNNLPETYKCVRCATGFPRISNLREHMITAHGTDRNRISGGFEYIVNADALKLIDGSGGGTANVYSGRYDYVMKDLMSINGGTLDDDDDDTDSNAAKRLRLDTSLPTATVTSGSGVSSNNNNSSNSNVNLQSSQKECPVCFAVFNNNIGLSNHMRSHTAAAANAANAAALAQANRMTPKSLTITATPSTTATLSNAASDALNATQTVTAAQEAHYRRGFEQAADRRFRRMRCQICQRRFSSKKSYRYHMFNDHQIRNVQFIKCKLCNADFAHEKGLKVHLFKVHNTLIKDDMIIKQFECDICSIVYTSESELLQHKKSIHGAEDAQAGDVDMDETAGAHDATAISSANLSGISTPVSGVNNTNTSITSTLTTGDGTVTGPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSKDYSCKDCGNVYSGRKSLWVHRYKKHPQIAEPSECVLCRKVFFDRQMLENHTPTCNRKPITATGALAETVAPTLSRPFYKHKTGDDEDDDDEDGGSDSNSGAAGTVVGTLGGGEVEVSTMPSTTSLKFKIPEVACTICGARFSDQDLFAKHIQRHEQELYTDNPLAAMFDDGPSDPNQFYLDRVNDNGEYACDICAKTFTQMTALKVHRKWHFRGDSKQVSFLGLCSEVPYISNSNILRVIKIDDNNDDDDEEEDRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -