Basic Information

Insect: Phortica variegata
Gene Symbol: Sall1
Assembly: GCA_001014415.1
Location: JXPM01002036.1:31911-34109[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.7e-05 0.0056 17.1 2.5 2 23 263 285 262 285 0.95

2 12 0.0001 0.0083 16.5 2.0 2 23 292 313 291 313 0.97

3 12 6.9e-06 0.00057 20.2 2.0 1 23 317 339 317 339 0.98

4 12 1.8e-08 1.5e-06 28.3 0.6 1 23 345 367 345 367 0.99

5 12 0.038 3.1 8.4 2.9 1 23 374 396 374 396 0.96

6 12 0.00028 0.023 15.1 5.7 1 23 402 424 402 424 0.98

7 12 2.5e-07 2.1e-05 24.7 0.3 1 23 430 452 430 452 0.98

8 12 6.3e-06 0.00052 20.3 0.4 1 23 458 481 458 481 0.97

9 12 7.3e-06 0.0006 20.1 2.3 1 23 487 510 487 510 0.98

10 12 9e-05 0.0075 16.7 0.1 2 23 517 538 516 538 0.96

11 12 0.00015 0.013 16.0 1.0 1 23 544 566 544 566 0.96

12 12 0.0002 0.017 15.6 0.1 1 23 572 596 572 596 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.7e-05	0.0056	17.1	2.5	2	23	263	285	262	285	0.95
2	12	0.0001	0.0083	16.5	2.0	2	23	292	313	291	313	0.97
3	12	6.9e-06	0.00057	20.2	2.0	1	23	317	339	317	339	0.98
4	12	1.8e-08	1.5e-06	28.3	0.6	1	23	345	367	345	367	0.99
5	12	0.038	3.1	8.4	2.9	1	23	374	396	374	396	0.96
6	12	0.00028	0.023	15.1	5.7	1	23	402	424	402	424	0.98
7	12	2.5e-07	2.1e-05	24.7	0.3	1	23	430	452	430	452	0.98
8	12	6.3e-06	0.00052	20.3	0.4	1	23	458	481	458	481	0.97
9	12	7.3e-06	0.0006	20.1	2.3	1	23	487	510	487	510	0.98
10	12	9e-05	0.0075	16.7	0.1	2	23	517	538	516	538	0.96
11	12	0.00015	0.013	16.0	1.0	1	23	544	566	544	566	0.96
12	12	0.0002	0.017	15.6	0.1	1	23	572	596	572	596	0.91

Sequence Information

Coding Sequence: ATGGAAATAGATTGTTGTTATATATGCGGTTGCTCGCTGACAGAAAGTAATACATTCGAATTGTTGTTCGAAGAGACGGTACCCGATGGCGGAGGAGCGGCAAGGTCATTAGCGGATATTCTCTCCAAAATACTTGGGtgcaaacttgaaaaaaatcgacaaaccTCAACGTGCATCTGTACGCCGTGCGTCGTTACTTTGGAAACTTATGAAAGCCTGGAACAGCAGCTTGACAATCTGCGATGTCTTGTATTGAATACTTACAATCTGATGACAAGAGAGGATGAGCAGCCAAACTCGGAAGTTGTTTCCGCTTATGATGGTGAAGGgataaaaatggaaatgacTTTTTCTATGTCAGATCTCATTGAAGAGGTTGAAGAAGTTGATTTCACATTGCATACCGACGAAATCAGTTGTGACATGGTAAATGAGGAGCCGAACTTACACAGCAATGacaagacaaacaatttttatgaaactttggactCATTTGATGTGATAATTGATGAAGATAGCGAGTTTAATGAAGCCGATCAGAGCATATTAGATGATGAGAACATATTGGATTCGGAGGAGACCAATAACGAGGAAGCTACTGGCAGTACTTCATTCTATGCAGAAAAGACGTTATCCGTGGAAGGTTCCTCAGAAGAAAGCTTTGATTCTGTCACGACTTCGAGAAatcgaaaatatatttgcaaagTCTGCACACCACAGACTACACATAATAATTTGTCGGCTTTAAAACAGCACAGAGACGCGGTACACAATGTAGAAATATGCACATGCGAAATCTGTGGTCAAGTATACAAATCTCTACAGGATCTGCATAATCACATGGATACATCTCATGAAGGCATAATTCGGACTAAATGTGAGGTGTGCGAGGCGACATTCAACAGTTTTAGTAACTTGTGTATGCATATGAAAGGACATGACAAGCCGTTTATATGCAAGATATGTCAAAAGGGTTACACAAACGAAAATACGTTAAAATATCATATGCGTAAGCATAACAATGAAGGGGCTTTCAAGTGTGATCAATGTGGCAAAGTTTTTTCATCCAATTCATCGCTGAACGTGCATCTTGAGACGCACACATTACGCACTCGTAACTTTGCCTGCAatcaatgcaataaaaaattcttgaaGGAGGCAACGTTGCACCAACACTTAACGTCACACACTGGAGTGAAATCTTTTACTTGccaaatttgtaaaaaaggCTTTCAGACTAACCATACACTTTGTATGCACATGGTGACACATAGCGGCTTGAAGCCGTTCATATGCCCAACTTGCGGTAAGACATTCGCACGACGCAATGATTTGCGCGATCACGAACGTGTACACACTGGCGAACGACCTTTTAAGTGTACTATGTGCCCTGCAGCTTTTGCGCAACGTTCGAATTTGGCATCTCATACCAAAAGTACACATCTTGATCAGAAGGGCTATAAGTGCGATCAGTGTGGTAGAGAGTTCAAGCGTCGCCGTTTGCTTGACTACCACATGAAGTCTACACATACTGGGGAACGTCCAATTGTGTGCACAATGTGTAGTGCTAGCTTTGTCTATCCCGAGTATTACAAGCGGCATATGTTGATTCATTCTGGCGTGAAACCTTTTGCTTGTGAGATTTGTGGTAAAGCCTTTCACAGTCGCGAAAATCGAAATGCTCATCGATTTGTGCACTGTAATAAAAAACCATACGAATGCCTGGAGTGTGGGGAGGGTTTCATGCGCAAGCCTCAATTACTCACGCATCTCAAAATAAGTCAACACTCCAGTGAGGTGATAATCAAAAATGAGCCCCAAATTACTGGCGATCTAAAGCTATCTTTTGATACTGAAGAAGAGCATGGTACTTCAACCGACATGATAGTTATATCGCAACGgataagtattaaaaattaa
Protein Sequence: MEIDCCYICGCSLTESNTFELLFEETVPDGGGAARSLADILSKILGCKLEKNRQTSTCICTPCVVTLETYESLEQQLDNLRCLVLNTYNLMTREDEQPNSEVVSAYDGEGIKMEMTFSMSDLIEEVEEVDFTLHTDEISCDMVNEEPNLHSNDKTNNFYETLDSFDVIIDEDSEFNEADQSILDDENILDSEETNNEEATGSTSFYAEKTLSVEGSSEESFDSVTTSRNRKYICKVCTPQTTHNNLSALKQHRDAVHNVEICTCEICGQVYKSLQDLHNHMDTSHEGIIRTKCEVCEATFNSFSNLCMHMKGHDKPFICKICQKGYTNENTLKYHMRKHNNEGAFKCDQCGKVFSSNSSLNVHLETHTLRTRNFACNQCNKKFLKEATLHQHLTSHTGVKSFTCQICKKGFQTNHTLCMHMVTHSGLKPFICPTCGKTFARRNDLRDHERVHTGERPFKCTMCPAAFAQRSNLASHTKSTHLDQKGYKCDQCGREFKRRRLLDYHMKSTHTGERPIVCTMCSASFVYPEYYKRHMLIHSGVKPFACEICGKAFHSRENRNAHRFVHCNKKPYECLECGEGFMRKPQLLTHLKISQHSSEVIIKNEPQITGDLKLSFDTEEEHGTSTDMIVISQRISIKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195449;
90% Identity: iTF_01195449;
80% Identity: -