Pvar013240.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phortica variegata
Gene Symbol
-
Assembly
GCA_001014415.1
Location
JXPM01011565.1:768-3758[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.7e-08 7.2e-06 26.2 3.7 1 23 214 236 214 236 0.99
2 16 7.8e-06 0.00065 20.0 1.1 1 23 243 266 243 266 0.96
3 16 0.012 1 9.9 0.2 2 23 301 322 300 322 0.96
4 16 0.00027 0.022 15.2 0.3 1 23 409 432 409 432 0.98
5 16 0.01 0.84 10.2 1.3 1 21 439 459 439 460 0.94
6 16 0.0028 0.24 11.9 3.3 1 23 469 491 469 491 0.97
7 16 1.6e-06 0.00013 22.2 0.9 2 23 499 521 498 521 0.97
8 16 0.00033 0.027 14.9 3.8 2 23 529 550 528 550 0.97
9 16 0.00068 0.056 13.9 0.0 3 21 578 596 576 597 0.93
10 16 0.71 59 4.4 11.0 1 23 653 676 653 676 0.97
11 16 0.0096 0.8 10.3 0.4 2 23 714 736 713 736 0.97
12 16 3.6e-05 0.003 17.9 1.0 2 23 762 784 761 784 0.94
13 16 0.00035 0.029 14.8 0.4 1 23 798 820 798 820 0.96
14 16 7.5e-05 0.0063 16.9 0.1 1 23 826 848 826 848 0.99
15 16 1.2e-06 0.0001 22.5 0.6 1 23 854 876 854 876 0.98
16 16 0.0036 0.3 11.6 6.6 1 23 882 904 882 904 0.98

Sequence Information

Coding Sequence
ATGTTGCCTTCCTACGTATGCCGAACATGTGAAGCTGAAGATGAAAACATAAATCTGCAGCCACTCAAATCAATCGTTGATAAGGACAATTATTCTAATAAGTTGCTATCCGATTTGTTGTTGGAGGTAACGTTGATCAATGTAAACGATGAttgccaaataaaaatgccacaaCATGTGTGCACCACATGCACTTccaaacttaaaaatgcatatGACTTTGTTGTGCAGGCACGACGGACTAATGAactatttctttctttcttggaATCTCCATGTAATTACCAATTTACAGCTCAAATAGAAGACAAAATGAACTCAGACGTAAAGCGTGTAACTTCTGTTAAGTTGGaaaacaatgaagaaaaagaaaaattactgAACGAAAATATCGAAGATTTATACGACATAACGAATAAGGGTGGAGAAAAACACGAATTCATGGAACCATTAATAATGCAGGATGACACAAATACGAGCGCCAATATTAATGAGACATTTGACCCgctgataataaaaaataattcggTGTGTGTGCATCACCACCCAGATGCAGATTCGAGTTATGATGAGTCTGATGAATTGCCGCTAAAAGAATGCAAGCGCAAGTTGGAAAACGatatattgaatttgaaatcgTACAAATGCAATCATTGTGATAAATCATTTGTACGTTCACAATCACTCGAAAAACACATGATAAAGCATCGTTCCAAAAGTGAATGGTTTGATTGTAATCAGTGCGATCGAAAGTTCTATCGCAAGGACCTACTTCGAGCTCATCTTATAAAAGAACATGGTGCACCAGCGAAAAAAATACGTGTGGGCAATGTCAGAGAATGCCAACGTGCCGTGGAAGTCGATATAAATCGTTGTAAGCCCAACGGttgcaaaataatacaatgCATGATTTGTTTGAGAAAGTATATGAATTTTTCGGCGTTGCGAGCTCATTTGATGGAACATGCAAAAATATCTGCACTTCCAGAAAGAAATGAATTAGTTGCAGAAGTTATAGAGTCACTATATCCAGACTTAGAGAATGTGGCCGAAAATCAACTGTTTGCGCTAATACGTAAAGATCTCAACGAACAATGCTTTACACGTTTCTATTCCATAACGAATGAATCAGGGTACGAACTTAATTTGGATAGCTCGGAAACAGAAAGTGATACTAATATGGAAATAGATGAATATATATGGAAAGATCAACGACAAAGTAACTACCGTTGTGAGTTATGTCCGGCTATTTTTGcacgaaaatatgaaattttcgaACATCAGAGAAAAGAACACGACTGGCTTGAAGCAAAACATGTATGTAAACGATGTACGGCACGTTTTGTTAATAAAGATTTGCTGGACCATCACTTGAATAGtctttgtaaaaatattgaaaaacgtTTCATTTGCAAGAAATGTCCAATGAGATTTCGCTGGCGACATAATCTTAATGCGCATACAAAAAACCACCTGAATAAAACGCAGGCGGTTAAATGTTCTGATTGCAATCGCACCTTCCAGGATCAACGTTCGTTAACAATTCACATGCGCAGTGTTCACATAGATAAGTCCAAGCTGCTGCAATGCCAATGGTGCACACGATCGTTTTATAGCCGAGATTGTCTAGTAAAACATTTGAAACGACATAATTTGTCAGAACAAGACATGCCCTTAGCTGAATGTCTCATAGCAGCTACATCAAAAGCTAATGGCACAAAGCGtattatatgtaaaatatgtaatttaaatttttctcgAATTGAGGAGTTACGTGCACATATATTAATggcattgaaaacaaatttatcacAACATCACAGCTATGATTCCTTAGCAAATTATTCGATAACGAATGAATTGGGCTTCGAGTTGCACATTGATGATTCCGAGAcagatgatgatggtgatttAGTAAGCAGAACGAAACAAAAGTCCAATAGCAATGGTCCAAAGTATACTTGCGATCTGtgtcaaataaaatgtcatcGTAAATTTCAGTTATGCCATCATCAGCAATCATTACATTCTTTTGGCAAATTACCATATGAATGCGATAGTTGTATATTCAAAAGCGTTTCCAAGgaTATTCTTGAACATCATAAGCTCACTCAATGCCTAAACACTGAGAAACGTTCGCAgtgtgaaaaatgcaaatacaaattcatgTGGCCTGAGAATTTAGATTTGCATATGCGCATATATCATGCCACAACAAGTGATGACAAAATCAAAGATAAATTCGTAGCTAGTAAGAATTCTAAGGAGTCCGCCCCCCCACTTCAGTGTCCACATTGCGAAAAGTCCTATAGGCAACAAGCCAGACTCAATATGCATATTAAGGACGTTCATATTGATGACAACCGtaagaagaaagaaaaggcTCATCGATATTTGTGTTCACTTTGTGGTTTAGAGACGCAAACAAATTCTAAGCTCATAATACATATGCGTCGCCACACCGGTGAAAAACCCTTCAAGTGCGATGTTTGCGGTATGGCTTTTACAGTACGTAATGAAGTAGAGATCCATCGTCGGATACACACGGGTGAGAAACCTTTTAGTTGCTCTATTTGTGGAAAAGGTTTTGTGCGTACGGGAAAACTGAAAACTCATATGCTTTCGCATAGTGGATTGAGGCCGCATAAATGTTCCTTTTGTACTATGGATTTTAGATATCGACATGACTTGAAAGCCCATCTTCAGAAGCACGTCGGAGATCCGGAGCCACTTGGAGACAACGATAACAAATag
Protein Sequence
MLPSYVCRTCEAEDENINLQPLKSIVDKDNYSNKLLSDLLLEVTLINVNDDCQIKMPQHVCTTCTSKLKNAYDFVVQARRTNELFLSFLESPCNYQFTAQIEDKMNSDVKRVTSVKLENNEEKEKLLNENIEDLYDITNKGGEKHEFMEPLIMQDDTNTSANINETFDPLIIKNNSVCVHHHPDADSSYDESDELPLKECKRKLENDILNLKSYKCNHCDKSFVRSQSLEKHMIKHRSKSEWFDCNQCDRKFYRKDLLRAHLIKEHGAPAKKIRVGNVRECQRAVEVDINRCKPNGCKIIQCMICLRKYMNFSALRAHLMEHAKISALPERNELVAEVIESLYPDLENVAENQLFALIRKDLNEQCFTRFYSITNESGYELNLDSSETESDTNMEIDEYIWKDQRQSNYRCELCPAIFARKYEIFEHQRKEHDWLEAKHVCKRCTARFVNKDLLDHHLNSLCKNIEKRFICKKCPMRFRWRHNLNAHTKNHLNKTQAVKCSDCNRTFQDQRSLTIHMRSVHIDKSKLLQCQWCTRSFYSRDCLVKHLKRHNLSEQDMPLAECLIAATSKANGTKRIICKICNLNFSRIEELRAHILMALKTNLSQHHSYDSLANYSITNELGFELHIDDSETDDDGDLVSRTKQKSNSNGPKYTCDLCQIKCHRKFQLCHHQQSLHSFGKLPYECDSCIFKSVSKDILEHHKLTQCLNTEKRSQCEKCKYKFMWPENLDLHMRIYHATTSDDKIKDKFVASKNSKESAPPLQCPHCEKSYRQQARLNMHIKDVHIDDNRKKKEKAHRYLCSLCGLETQTNSKLIIHMRRHTGEKPFKCDVCGMAFTVRNEVEIHRRIHTGEKPFSCSICGKGFVRTGKLKTHMLSHSGLRPHKCSFCTMDFRYRHDLKAHLQKHVGDPEPLGDNDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-