Pvar002062.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- snpc-4
- Assembly
- GCA_001014415.1
- Location
- JXPM01007909.1:27713-30225[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3.8 4.8e+03 -2.2 0.0 4 17 136 149 135 160 0.88 2 6 0.048 61 3.8 0.0 22 46 191 222 175 222 0.69 3 6 5e-12 6.4e-09 35.8 0.0 1 45 228 273 228 274 0.95 4 6 0.00035 0.45 10.7 0.0 3 42 283 326 281 330 0.85 5 6 2.6e-09 3.2e-06 27.1 0.0 1 45 336 381 336 382 0.92 6 6 1.7e-11 2.2e-08 34.1 0.1 3 45 390 433 389 434 0.95
Sequence Information
- Coding Sequence
- ATGGCCTACAGTATGGATATGTTTGCTGATATTCAGCAAagtttgcaaaatgaaattcaaagtATCATCAAGGCAAAAAGTACGGTAAGCTACGAAAATGCACTCGCGCTTAACCAGGAACTTCAATCGCGTCTTCAGAAAGTCATACAACAACTGCATGATTTGTTGATAGCGGTTCGGAACAAGTACTctgaaaatgaacaaatattgAAGACGCgtctttgcacaaaaaaaggaatagGTGCGCGAGGAGCATTTTTGCGTGGTGGAACCTTTTTCTTCAAAGGTAATCTCTTCTTTCGTGATGCACGGGGTCGTTGTTGTCCCAACACACCGGATTATGAGAATCGCAGCAATGCTGGCGAAATGTTTCCAATGGATTTCAATTTACGAGCACGTCATATTTGGACAGTACGCGATAAGTCGCTTATCGTCAAGGCAATTAAAGCCCAGATAATTGAGCACTATGAATTGATTAAATTGCCAAAATCAAATCCGAATAAGTTGCGCAACGAAGTGCATTCCAAAAAACTTGTTGATCTATTAGCGCTAGTGGAGGCCGACGAGAAAAATGACTTTCAAATCGATTGGGCACAAATATCAGCTATTGATGTCGGCTACCGGCATACCCCTAAGAGTTGTCAGGCCATGTGGGAAGTGTATCTACAACCAAAATTCAATCGTGAACCTTGGAGTGACTCTGAAGATAATTGCTTAAAGATGGCAGCAAAGGAACATAATTATCAGGATTGGGAAACCATTGCTGCAGCTGTGGGCAGACGTTCAGATTATCAGTGTTTTATAAGATATATGACAACGTTGGCCACTCTCGATCAAAAGAGCTTACCGTGGCGTGAAGAAGATGATAGGCGACTACTACGACAGATTGAGAAATCCGCAACAAATGGAGTCATCAATTGGGCGGAGGTTATGATACATTTTCCGGATAAAAATAAGTCAACGATTATTGGTCGTTACTTGCATACACTTAATCCCAACATAAGTCGCGAGCCGTTTAGCCCTGAAGAGGATTTGTTATTACTTGCCGCTTACGAAGAGTACGATGGTAAATTCTATCGAATACCTCGTAATCTTTTACCGCAACGCTCACTGCCACAGCTTAGATCGCGTTACTATAGTACACTATCACAACGATCAAAAATCGACGCATGGTCTGCGGCCGATGATAATCGTCTTTTAGAATTTGTTAATGAGCATGGAACTTCACAGTGGCTCAAGTGTGCAAATGAATTGGGCAATCATACACGTCAAAGCTGTCGCACCcgtttttttacaattaaacaatttttcgaaaagaatccaaatgcaaatattacCGATTTGCCACGAAAACGTACGAGACCATCAAAAAATGGCATCACCACCGAAAATTgggcaaataaattatacgaATTGTCCACCGATGAGCcaccaaataaacaacaaagattATCAGGTGATGAAGTGAACACTAACGATAGTTCTAAAATAACACAGCCCGGCACGTACTTGAAACGTTTGCgtcaaatgcaattgaaactGTATAATTTCTTCAAATATTCTTACAACTTTCGGGTCGATGTCGACGCCGCAAATCAGTGGCCCATCTCGAATTTGGGGCTGCGCATTTGCATGAGTTCGCTGAGTCATAGACATCCCATGACAACTTCTGAGCATCAATATGATTTGACTTTGCCAAAATCATTACGTTACACATACGATGATATGCTGCGACAGTTGCCAAATGAAGATTTAGTGCCAACTGGTTACAAGCTACCGCCAAGTTGGTATACTGCGATGGGCTTCCGTGCGCTCAGCATACAACGGGCACTGACTGACGTAACAATGGAACCTGCACAGGTTGAACAACATAACAATGCTGTGCAACGTAATGAACAATTACGCAAATTTCGTCAACGTTTTCGTGCGCTTTTCTACAAAACTGCCATATTGTGCCGTATACAAACCGATAGCATAACAGGTTTGCACGCAGCATTACAGTCGGCTAAATTTCCAAGCGTGAGCTCGATGGAATCAACGCCTGTGCCCACATTGGCGTTGATGCCTGTTCGTGTTTTCGAACCAGTCCATCGTACAGACGTTTATGAAACGGATGCAACTCAATCATCTCTtactgaaaataataattccaGCTTTACACAATTGGAAGAAAAACAACGTGTGGCTGCCGATCAATTGGCTAatctaaaatga
- Protein Sequence
- MAYSMDMFADIQQSLQNEIQSIIKAKSTVSYENALALNQELQSRLQKVIQQLHDLLIAVRNKYSENEQILKTRLCTKKGIGARGAFLRGGTFFFKGNLFFRDARGRCCPNTPDYENRSNAGEMFPMDFNLRARHIWTVRDKSLIVKAIKAQIIEHYELIKLPKSNPNKLRNEVHSKKLVDLLALVEADEKNDFQIDWAQISAIDVGYRHTPKSCQAMWEVYLQPKFNREPWSDSEDNCLKMAAKEHNYQDWETIAAAVGRRSDYQCFIRYMTTLATLDQKSLPWREEDDRRLLRQIEKSATNGVINWAEVMIHFPDKNKSTIIGRYLHTLNPNISREPFSPEEDLLLLAAYEEYDGKFYRIPRNLLPQRSLPQLRSRYYSTLSQRSKIDAWSAADDNRLLEFVNEHGTSQWLKCANELGNHTRQSCRTRFFTIKQFFEKNPNANITDLPRKRTRPSKNGITTENWANKLYELSTDEPPNKQQRLSGDEVNTNDSSKITQPGTYLKRLRQMQLKLYNFFKYSYNFRVDVDAANQWPISNLGLRICMSSLSHRHPMTTSEHQYDLTLPKSLRYTYDDMLRQLPNEDLVPTGYKLPPSWYTAMGFRALSIQRALTDVTMEPAQVEQHNNAVQRNEQLRKFRQRFRALFYKTAILCRIQTDSITGLHAALQSAKFPSVSSMESTPVPTLALMPVRVFEPVHRTDVYETDATQSSLTENNNSSFTQLEEKQRVAADQLANLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195205;
- 90% Identity
- iTF_01195205;
- 80% Identity
- -