Pvar014877.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- lov
- Assembly
- GCA_001014415.1
- Location
- JXPM01003430.1:27028-39760[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-18 1.2e-14 53.7 0.0 2 44 748 790 747 791 0.94
Sequence Information
- Coding Sequence
- ATGTTAAAGGACATTGAGGAGTTGATTAAACGTCGCAAACTGACAACGTTGGCATTGCATATGACCGAATATAGTCATCATTACAGTCTGCGTTGGAACAATCATCAGAATCATATATTGCGCGCCTTCGATGCGCTCCTGCAGACAAAAACGCTCGTTGATGTGACGCTTGTGTGCGCTGAGACGAGCATACGTGCGCACAAGATGGTGCTTTCCGCCTGTTCGCCCTTCTTTCAGCGCGTCTTTGCCGAAACGCCTTGCAAGCATCCGGTGATTGTGCTGAAGGACTTTCGTGGCTGGGTCGTGCAAGCGATTGTCGACTTTATGTATCGCGGTGAGATTAGCGTGCCGCAAGAACGTCTCCAGACGCTCATACAAGCGGGTGAGTCGTTACAAGTGCGCGGACTCGTCGAGAGTTCTGTGCCCGAGCATACACCAACGCCGGCTGCATCGCCCGATGATTTTGGCATGTTGCATGATGCTTCACTGATGAGTTCCGAGTTGGAGCGTTGCTCAAGTTTCGACGATGATCGTGAGGAACGTGAACGTGAGCGTGAAATGGTCGAAAGTGATCAAGAGTTGCAGGGCGCGGATTTATGCACATCGCCGATGCCGCGACGCAAGCAGGCGCGACCACGTCGACGTTCAGGTGAAATGCCGCATGACTTTCAAGACTTACCCGAGACGAACagcacaacaacgacaacgacggcgGCAACAGCCTTGGCCGTGAGTCGTGAGGCACGCTCAGCAGATGCATCACCAGACTCAAGAGACAAAGCCGCTACCGCTGCTGCAACCGCCGTCGCCTCAGACGTTGTGCAACGTGAGCTAAGTGATTTACATGCCCAGCAATTGGCCGCGCTGCAAACTGTGATCAAAAGCGAACTGGCTGAGCCCATGgacgatgatgaggatgaaGCAGATCGAGATGATAATGAGCATGAGCATATGCTTGGACGTCATAATGACACGGATGGAATTGAACGCGATAGCGGCACGGGCAATGATAGTCACGAGCACAATGAGTCACAGGATCAGAAAACGCACGACTTATCGCACAAAAGTGAAGTGGTGGATGAACAAAAATCGGAGCATAATAACACTTTGGACGATTCCGATCAAGATGATTTGCATAATAATGCGGCATCGCCTGTTGACATGGCCGATGATGACGAGGAGGAGGACATTGAAGAGCTTATCAACAGCACGAATGAGCTGCGACGCAAAGCCATGCAGTCGCCATGCCACTCCGATGGACCGGAGGATCTCTGCACCACAAAGAAGGATAATCACAATGATACGAGCGGTCATCATTCGACATCCGCTTCGGACAACGAATGCAGTCCGGcgaataacaataataatagcagTAAACTGAAGGACAACAATCAACGTATTGTGCTCTCGCTCAAGGATATAAGACACCTGAACAAGCCCAGCTCAAGCTCTACACCAAATTCCAGCTCGAATCATCCCTTTGCGCCGCCCAGTCTGCGTGACTTGCGTTTAGATCACGCCACCGACAGTCCCTGCAACATGGAAGCACTCGAGGCACAAATGCATGCCGCAgccgctgctgccgttgcGGCCGCAAGCGCTGGCGCCGAGAATCCCTTCCAGCATATGGAACATCAAATGGATCTCTCTTTGGCTGCGGCCGCTGCGGCGGCTGCGGTCTCGCATCAACACTCACGTGAACGTGATCATGCGTTGCGTGAGCGTGAACGTGAACATCGTGAactacaacaccaacacaatgCATTCGCGAATAGTCTACTCGGACCGATGGGTATGCCGCCCTTTGGCCCAAGCGGTGGCGGTTGCGGTCCAAATGGCCCGAATTGCGGGCCGCTCGGTGGTCAGGCGCCACATGAACGTCTCGAGGAGAGCATGAATCGTTTGAGCAAAGAGTTTGGCAAAGAATTCGCGCCCAGCTCACCAATGAGTTTGCCCTCACATTTCAATCCACCGGATGGACCGCCACATCCGCCCTCACCATTACCGTTTCCGGGCATGTCATCGGCGCTGACGTTGACGCCACCGCACATGTTCGGTTTGGATTCACCGCTTGGACTTTTTCCGCCTGGCATCGATCCTGGCAAACTTTACAATCCGCTAATGGAAATGAGCGATCCGCGCGATATGCCCGGTGGCCCGCCGCCATTtctgaaaaagaaaaTGCCACGCCCAAAAGGTCAACATTCGGCGCCACGTGGTGGTCCGCCACGTTCGTGGACCAATTCCGAACTCACTGAGGCATTGCAACATGTTTGGAACAAAAAGATGACAACATCGCAGGCATCACGCATCTTCGGCATACCCTACAATTCGCTCTTGATGTATGTGCGCGGCAAATATGGCAAAAGTTTGAAGTTGGAACAATTGCGTAAGGATTGCATAAGCGGACCGCCGCTAGAGATGCTGCAGATGGGCATCAGCAGCAATTCGGGCTCGAGTAAAAGTGAGAAGCACAAAGAGCGCAAGGAACGTGAGAAGGACAAGTcgggcggtggcggtggcggtggcggttccggtggtggtggtggcggcggcggtccAGGTGCTAATGGCGGCGATAATGGACCGCCGGGCTTGCCACTTGAATTGGAATTGGGTTTGCATATGCCAGGCGGTGGTGGACCGCCGGGTGGGCCACGCAGCGCTAGCTCAGAGTCTGATCTGCTTGGTGGTCCGAATGCGCTCTTCAATCCTTTTAATCCACAAGGTTTCTATCCAGACTTTCCGGGCGGCTTTCCTGGTCTGCCGCTGAGCATGCTGAATCTGTTGCCACCCTCCGAACGTCATCAGCATGCAGCAGCCGCCGCTGCAATGCATCATATGAGCGGCGCAGGCATGGATGAGGATTGCAAATCGGATCGTTCAAAGCAATCGTCATCGTTGGATGAAGACTATCCCGGCCCGTTGGCGCTCAATCGTGATGAGCATCACCGACGCAGCAGCGAGATGTTAGCGGCAGCATCGGCAGCCGGTGGCGGCAATCCCAATGGTTCGTTGGCGCATGCGAATGGTGGCGGCAGTGGGCAGGATTGA
- Protein Sequence
- MLKDIEELIKRRKLTTLALHMTEYSHHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQERLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLHDASLMSSELERCSSFDDDREEREREREMVESDQELQGADLCTSPMPRRKQARPRRRSGEMPHDFQDLPETNSTTTTTTAATALAVSREARSADASPDSRDKAATAAATAVASDVVQRELSDLHAQQLAALQTVIKSELAEPMDDDEDEADRDDNEHEHMLGRHNDTDGIERDSGTGNDSHEHNESQDQKTHDLSHKSEVVDEQKSEHNNTLDDSDQDDLHNNAASPVDMADDDEEEDIEELINSTNELRRKAMQSPCHSDGPEDLCTTKKDNHNDTSGHHSTSASDNECSPANNNNNSSKLKDNNQRIVLSLKDIRHLNKPSSSSTPNSSSNHPFAPPSLRDLRLDHATDSPCNMEALEAQMHAAAAAAVAAASAGAENPFQHMEHQMDLSLAAAAAAAAVSHQHSRERDHALREREREHRELQHQHNAFANSLLGPMGMPPFGPSGGGCGPNGPNCGPLGGQAPHERLEESMNRLSKEFGKEFAPSSPMSLPSHFNPPDGPPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNSELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGISSNSGSSKSEKHKERKEREKDKSGGGGGGGGSGGGGGGGGPGANGGDNGPPGLPLELELGLHMPGGGGPPGGPRSASSESDLLGGPNALFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPSERHQHAAAAAAMHHMSGAGMDEDCKSDRSKQSSSLDEDYPGPLALNRDEHHRRSSEMLAAASAAGGGNPNGSLAHANGGGSGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196077; iTF_01195196; iTF_01195372;
- 90% Identity
- iTF_01195196;
- 80% Identity
- iTF_01196077;