Pvar012320.1
Basic Information
- Insect
- Phortica variegata
- Gene Symbol
- -
- Assembly
- GCA_001014415.1
- Location
- JXPM01009430.1:38435-40441[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.39 1.4e+03 -0.9 0.0 3 16 226 239 225 241 0.89 2 4 3.1e-15 1.1e-11 44.2 0.0 3 41 339 377 338 380 0.92 3 4 0.0048 17 5.2 0.0 27 37 410 420 401 425 0.90 4 4 2.9e-18 1e-14 53.9 0.0 2 41 447 486 446 488 0.94
Sequence Information
- Coding Sequence
- atgAATCACCTCAAATGGATGGGACACACGTCGACGTTAATGGAGATAAATCAGTCTTTACGTGACGATGCCGCGAGTTGTGAAGTGACTTTAGTCGCAAAGGATGGTTGTACAGTGCGCGCTCACCGATTTGTGTTGAGTACTTGCAGTGACCTTATGCGAAATGTGTTGGTTGATGTGCCACAAGGGCAAGAATGTACCATTATGCTGCCGGAGATAAACGGGTCACTATTGGATAGTAtgctttcatttatatatgtcGGTGAGACAAACTTGCCATCGTCCAGCCTAACTGAATTTCTTGAAGCAATAAATCTACTTGGCATTAAGTCGGCGATTAGTTTTGAGTGTAGCGCCGCAAGTTTAAGCGCAAGTGGTGTAGCAATCGGTGAGGGCAGTGCAGAAGGCACAATGGATGTAAAGGCAATTAGTGGTTTACAGATCACACAAGAAGAGTTACTTGAAGAAGATGGTGTAGAAAAGCTGGttgTCAGCAATGTTATggaacagcaacaagcaaGCGCACCGCGTGAAATGGAATTTCTAGACGTATACAGCGAGCAGCCAAAAATCACTTACTCTATAGAACACATGTCTGGAACTGGTGGCGGCGGAGAATTTATATTAACAACTGACAATGCAAACACATTTACACTGACGCAAGCACAAGCCGGTGATAAGTTGGCTGACGCAGCGTCATCAGTAGTTGAGGGTGGTGAATTGGTTGAAGATAACGATGTCTGCGAGGATGTTGACGGATCGAATATAATTGAAGAGGAGTATAACAGTGGCGGAGAGCCTTTGATGGATTTAAGTGGTACAGATGTCGAAATGAGCGATGCAGCTGATACGGATATGGCACATGTAGAATCGGGCGAAGCAGATGCACAAATGATTGCAGCAGCACGAGCCGCTGTAAAAATTCGAACAATGAAAGCGAAACGCGATCAAAAACACACCCGTGGTGAGGGTACTACAAAAAAGAGGATCAGAACAAAGAATCCCATCGAAGTTGACAATTTAGAATTAGCTGCACACGCTGTATTAACAGAGGGCTTGAGTTTACAGAAAGCGGCAGACAAATATGACATCTCAAAGACAGTGTTGTGGCGACGAATGCGTAAGGATCCAGATTACGCAAAAACAGGTCGAGAGAGACCAGCACTCGCACTTGCCTATGAACGGCTGAAAAAGGGAGATTCGCTAAAGAATATAAGTAAGGATCTAGACATACCAATGTCAACACTACATCGCCACAAAGTACGTCTTTCAGAGGAGGGTCGGTTACCACAATTCGTTGCCTGCCGCCGCAGAGATTCGACACCAAAAGACGAGCTTAATGAGAAACTTGCCAAGGCAGTGCATGCCTGTGTTCATGAGGGGATGTCACAAAATCATGCAGCCACAATTTTCGAAATAGCCAAAAGTACGTTGTGGCGTCATCTGCGACGACGTTTGGCAGAGGCAGAACAATCGATGGAAGAATCGGAAGAAATCAAAGAAGAGGTTATCTAA
- Protein Sequence
- MNHLKWMGHTSTLMEINQSLRDDAASCEVTLVAKDGCTVRAHRFVLSTCSDLMRNVLVDVPQGQECTIMLPEINGSLLDSMLSFIYVGETNLPSSSLTEFLEAINLLGIKSAISFECSAASLSASGVAIGEGSAEGTMDVKAISGLQITQEELLEEDGVEKLVVSNVMEQQQASAPREMEFLDVYSEQPKITYSIEHMSGTGGGGEFILTTDNANTFTLTQAQAGDKLADAASSVVEGGELVEDNDVCEDVDGSNIIEEEYNSGGEPLMDLSGTDVEMSDAADTDMAHVESGEADAQMIAAARAAVKIRTMKAKRDQKHTRGEGTTKKRIRTKNPIEVDNLELAAHAVLTEGLSLQKAADKYDISKTVLWRRMRKDPDYAKTGRERPALALAYERLKKGDSLKNISKDLDIPMSTLHRHKVRLSEEGRLPQFVACRRRDSTPKDELNEKLAKAVHACVHEGMSQNHAATIFEIAKSTLWRHLRRRLAEAEQSMEESEEIKEEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196104;
- 90% Identity
- iTF_01196104;
- 80% Identity
- iTF_01196104;