Poka012117.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067850.1:44383963-44400931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.81 75 4.4 4.7 3 23 367 389 365 389 0.93 2 14 9.9 9.2e+02 1.0 3.2 2 22 548 568 547 571 0.87 3 14 0.71 66 4.6 2.9 2 23 593 615 592 615 0.93 4 14 0.008 0.75 10.7 1.7 1 23 632 655 632 655 0.96 5 14 1.4 1.3e+02 3.7 1.2 1 22 660 681 660 684 0.89 6 14 0.021 1.9 9.4 1.0 1 21 756 776 756 777 0.94 7 14 0.14 13 6.8 0.1 2 23 798 819 797 819 0.95 8 14 0.02 1.9 9.5 4.3 2 23 831 851 830 851 0.95 9 14 3.7e-05 0.0034 18.1 0.3 1 23 857 880 857 880 0.93 10 14 4.7e-05 0.0044 17.7 0.2 1 23 909 931 909 931 0.97 11 14 0.047 4.4 8.3 0.1 1 23 938 962 938 962 0.96 12 14 0.1 9.7 7.2 3.2 2 23 968 991 967 991 0.95 13 14 0.0021 0.2 12.6 5.9 1 23 998 1020 998 1020 0.98 14 14 0.0022 0.21 12.5 9.3 1 22 1026 1047 1026 1051 0.94
Sequence Information
- Coding Sequence
- ATGAATCATGGCGACGACTTGGATGATGCGCATCTCTGCATCAAGTGTAATGCCACAATTGTTGGTCTGGAAAAATATGTCGAACATCGTAAACAGAATTGTGCCACGACTCTTGGAGTAGAGACCGCCAATGTGAGTGGCGAGCATAAAAACACCTCAAAGGTGTCAAACGCGCCGCCGACCACAGCGATCGAGAGCAATGCAGCTAACttgcaccatcatcatcatcatgatccaCACAGCTATGCGGACTACACATTTGCCGAACCGGAGGCGCCCAGCAGTTATGTGCAGAAAGCGGCCGAGCATGGCGGCAAAAGTGCGAAGCACATGACCGATGCCTATGACTTGACCTATGAGCTGGGCGCCGATGTGTTCTTCTCGTCGCTGCAGTTGCAAAGCGTGCAGTCGACAagtggcagcggcggcagtgGCGGCGCGGGTAAGACGAGCAGCAGCGGCGTTGGCCATAGTGCGCCCTTGAGCCGTCAGAAGTCACAAGCCGAGGCGAGCGATGAGCATGTTGAGTCATGGCTGGGTGAGCATGAGAACGGCACGGAGGCGACGCTCATGAAGGTGGTGCACGACATGAGCGAAGTGAAGAAACACTACGAGAGCGATTTCCAGTCGGTGAAGATCGATATGACGAGCGATGAAGATGACGACGGCGAGGAGGATGACGATGAGGAGCAAGAACAGGAGCAGGAACAAGATGTTGTCTACGAAgatgatggcgatgatgaGGACTATGATCCGCGTGAGGATGCGCTGGCCATGGGCATCAAGTGGAAACTGTCGCCCATGCGGCACTCGCCGCCCACGGTGCCGCTGACGCACACAGGCGGCAAATGGCGACCAGAGCATCGACCGAGCAATCTGAATGCAACGCACTTGACGCGTCCCATTTCGCCGAATTGGGATGAGCATGCAGACGAATTAGAAgccgagcaacaacaacaacaacagcatccgCCGGCCGAGCACACGAAAGGCAAATGGGTGCCGGGCAGCAAAGTGCAACGCTTGGAGTATCGCGAGAATCTATTCGATCTGACAGCGACGACGTCCGCCAAAGGCAGTCACAAGCAGAGCTATTGGTGCAACATCTGTTGTCGCAAGCTGCGCCGACGTGCAAATTACGAGCACCATTTGCGCACCAGCTATCACTTGAAGCGCGCCGAGCCCGAGCAACAGCTGGAGAAGGCAGTGCTAAGCGAACCAACGCCGACCGAGACAAGCGGGACACCGGCAAGCGCATTGGTGGTTGACTTGTTTGTGCCACCCAAGGCGGAGAGTCCTTCAACGACATTGACGAACGTGCCTAAGAAGCGCAAACGACGCGCCATCTTCTACAAGTGTGAGCTCTGCAAGCATGCAATGCAACATCATCTCATTGGCAAGCATCTCATCTCCCATTATCACTACCGACGCATGCAGTCGCTCGGCCACTCCTCCACTGGAAGGATCGATGCCCTGCACGCCATATTGACGCACATACATCGCATCGTCTTGCAGTCGCCGTATCAGTGTCGCTTCTGCTGCTTCTATCTCAACACCGAGGCGGCCTTCCTACAGCACTGGTCGAGCCCGGCACATCGAACGCAAGTCCAGCGCCAGTTAAGCGCCGGCGATTGTCGTCTATGCTGCGGCTATTGTCAGTATGAGTGCGAGACGAATGAGCGCATGCATGCTCATCTGCTGAGCGCCGAGCACAAGGCCGTCATACTCGCCGTCAATCGCTCCGTGCCCATTTGCATAACCAAGCGTCGTCTGTTACGCTGCGATCGCTGCACGCATGTCTGTCGCTATAATATTGAGCTGCGTGAGCACTTTGTCACGGCGCATGCTAGTCACGCGCCCACGGGCAGCGCCTCGGATGTGTATCAGTCACGCTACCGCTGCAGATACTGCGGCCAGTCACAACGTTCGCGCGTTGCGCTCCAGCGGCATGAGAAGAACAAGCACAGCATGGCCAAATATCATTGCGGCGTCTGTAAGTTGGAGTTCGAGACCGCTTTGAAGGCGCGTCAGCATCGCAAGTCCTTCGCGCATAAGCGGAAAACGGCTGAGCAACGTAGAAGCCTGGTTAGACAAACAAAGCCGGCGGTAAGCGTAGAGGAAGTCAAGCTTATTGAGGCGCCACTTGAGATTAAGCCAACCACGCCACCGCCAGCGCCCATCGTCTGCGGCCTTTGCCCTTCGCTCTTTCACACGCTGGACGCACAACGCGAACATCAAGCGAGCCAACATCCGCAAGCCATAATGCACGAGTGCATGCTCTGCAATCAAAGCTTTCACACGGCTCAGGCGCTTGGCAGACACACGCGCAGCTGTCAGCCCACGCCGTCGACCTCAACTGCGGCTGCTGCAGCCAGCAGACCAACCTCCTGGTCGTGTAACGAGTGCCAATTCAGCGCTGTCTATGAATCCGATCTGATCTATCATCGTCTGTTGCACACGCACGGCCATGTGGCACGCAACACGCGCTTGCCTTGTCCGCTCTGCCCGAAGTCCTTTCGCAAGCATTCACTGCGCTGTCATCTGCGTCAGCACACCGATGAGAAGATCTTCGCCTGCGATCGCTGTGATCTGAAATTCGCACGGCGCAGCAATCTCAAGAATCACGTGGACGTCGTGCATGGCGATAAGAAAAGCGAGCCTAAGTTGGTGAAGGCGAGCGATGAGCGTGTTAAGAAGGAAGCTGCAAAGGATTCGGTGAAGTCATATGTGTGCGACATCTGTGGCAAGACCTTGGCAAGCCCataCACTTTACAATTGCATAGAACGAATCACACACAAGCGGAACGTCGCTTCGTTTGCACCTATGAGGGCTGCCAGTATGCCGGCTCGACGCGTCAGACACTCAATGTGCACTTGGCATCCCACTCCGAAGAGAGCTTAAAGTGTGAACATGAGAACTGTGATTATGTGGGCAAGAGTGTAATGCATTTGAGAAGACACAGTCGAACGCATACAACGCGCAACAAAGTATACGCTTGCGCTCAATGTGATTTTAAAACACATAGCAAAAGTCATCTGACGCGTCATCTGCGACGTCATAGCGGCGAGAAGCCTTATCAGTGTCCGCATTGTGATTTTTGTTGCAGTCATTTTGATAATTTGCGCAAGCACATACTCAAGACGCGCAAGCATCCCGGCAAGTTTATGTATGAGTGCAAAGGTTGCCTCACGCCAGAGGCGTCGAATCAAGAGGATAATGTCTTTAGAACAAACAATTTTGCGGCATACCAACAACATGTTATGGCCACTCATCCAGAAAATGCGGAATTATTTTCCTGA
- Protein Sequence
- MNHGDDLDDAHLCIKCNATIVGLEKYVEHRKQNCATTLGVETANVSGEHKNTSKVSNAPPTTAIESNAANLHHHHHHDPHSYADYTFAEPEAPSSYVQKAAEHGGKSAKHMTDAYDLTYELGADVFFSSLQLQSVQSTSGSGGSGGAGKTSSSGVGHSAPLSRQKSQAEASDEHVESWLGEHENGTEATLMKVVHDMSEVKKHYESDFQSVKIDMTSDEDDDGEEDDDEEQEQEQEQDVVYEDDGDDEDYDPREDALAMGIKWKLSPMRHSPPTVPLTHTGGKWRPEHRPSNLNATHLTRPISPNWDEHADELEAEQQQQQQHPPAEHTKGKWVPGSKVQRLEYRENLFDLTATTSAKGSHKQSYWCNICCRKLRRRANYEHHLRTSYHLKRAEPEQQLEKAVLSEPTPTETSGTPASALVVDLFVPPKAESPSTTLTNVPKKRKRRAIFYKCELCKHAMQHHLIGKHLISHYHYRRMQSLGHSSTGRIDALHAILTHIHRIVLQSPYQCRFCCFYLNTEAAFLQHWSSPAHRTQVQRQLSAGDCRLCCGYCQYECETNERMHAHLLSAEHKAVILAVNRSVPICITKRRLLRCDRCTHVCRYNIELREHFVTAHASHAPTGSASDVYQSRYRCRYCGQSQRSRVALQRHEKNKHSMAKYHCGVCKLEFETALKARQHRKSFAHKRKTAEQRRSLVRQTKPAVSVEEVKLIEAPLEIKPTTPPPAPIVCGLCPSLFHTLDAQREHQASQHPQAIMHECMLCNQSFHTAQALGRHTRSCQPTPSTSTAAAAASRPTSWSCNECQFSAVYESDLIYHRLLHTHGHVARNTRLPCPLCPKSFRKHSLRCHLRQHTDEKIFACDRCDLKFARRSNLKNHVDVVHGDKKSEPKLVKASDERVKKEAAKDSVKSYVCDICGKTLASPYTLQLHRTNHTQAERRFVCTYEGCQYAGSTRQTLNVHLASHSEESLKCEHENCDYVGKSVMHLRRHSRTHTTRNKVYACAQCDFKTHSKSHLTRHLRRHSGEKPYQCPHCDFCCSHFDNLRKHILKTRKHPGKFMYECKGCLTPEASNQEDNVFRTNNFAAYQQHVMATHPENAELFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -