Poka018576.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067852.1:24689064-24693932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0081 0.75 10.7 1.7 2 23 338 360 337 360 0.94 2 9 0.015 1.4 9.9 4.6 2 23 519 541 519 541 0.91 3 9 0.0049 0.46 11.4 1.7 3 23 648 669 646 669 0.94 4 9 0.0004 0.037 14.8 0.6 3 23 961 982 960 982 0.97 5 9 0.0025 0.23 12.3 0.3 2 23 1038 1060 1037 1060 0.92 6 9 0.012 1.1 10.2 3.6 2 23 1107 1129 1106 1129 0.96 7 9 0.11 11 7.1 4.2 2 23 1143 1165 1142 1165 0.92 8 9 0.0026 0.24 12.3 2.3 2 23 1233 1255 1232 1255 0.95 9 9 0.058 5.4 8.0 1.2 1 23 1349 1371 1349 1371 0.99
Sequence Information
- Coding Sequence
- atggCTGCGTCTATATATGCCACCCCACCGCCAGACTTGAGCAGCGAGGATACTGCGTTATCTGATGTATCCAATTCATCGACACTGAATACACAACGTAAcggtaacagcaacaacaacaacacaagtcATAACATAAACACAAATACGACAACGAACACGACAACGTCGCCAACGACATCAAGTACAACACatcaatacaaacaacaacaacaacaacagcaacatcacaCTACACAAAATAGTCGCGATGAAGCcacatcgacaacaacaataaataaaacaacaacaacgccgccACCAtcagttacaacaacaacagcaacagcggcgATATCAGTACCAACATCAcccacaactacaacaactacaactacaatgaCCGCCGCAAAGAAACAACGTAAACGGAGCATTGCTGAAGCATTAATGCTTGATGGCGTTGGCCAAGATTCGGGAAGCAACACAAATGCGAGCAACGATGCCAACGAAACTGAAGCGTTCTTACGCGCTGCTGATGTTAACGCAGATGACGATGCTGCTGGCATCGATAGCGAAGCCAATGCGGCGGCAATGAACGCTGTCGCAGCGGCAGCCAATGCAGCCATGCAGTTGCGTCTGCTGGAAGCCATTAATGATGCGGCAAAAAAGCGACGCAAGCAACACAATCCCAGTCGTCATGAAGCGCTCAATTTGAGTGGCTCGGAGGCGGGAGTGGCGGCAGCGATGAGCGAAGCAAACGAGCAACAAGAAAAGGAAACAAACCATGAATTGTCAAATGTGGTTGTCGACTATGAGGAGAAACTATCGAAAATGTTCTTACCCAAATCGATTGAACAATTGAAGGAACAGTTTGAAATgttgcagcaaaaacaacagcagcagcaacagcaacagcaagagGAAGTCGAACAGGATATTGAAAACATATCACAAAGTAATGACATCAGACAGTCAAAGTTGGTTGACGACGCTGAGGCATTGCTGGACGCAACAAAGAATCCTTATCAGACTTATTGCAAACAGTGCGGCGAGAATTTCGAGACGGAATTCAAACTTAGTCTGCACATGTTGCACGAGCATCCGGCGAGCGCCAATGGCGGACTCGGCGAGGGCAATGGCAGCGCAATGGACGCGAATATGGCGCATGGTGCTGACAATGTGTCACCGCTTGATTTCTTAGCGTCGGTGAAAGTGAAACTCGAACGTGGCGATAGTCCGACCGGTTGCAATGAGAATGAAGCACCGCCAACGGGTCAATTGGAtatgcagcaacagcagcagcagcaacaattccaaatgcagcaacatcatcaacaacaacagcagctccAGCAGCAACATGGCTTGCAGGCAACTGATTTGCTCTCCAATGGCAAGGATCATTGGCTGAACGCTTTGCCGCCGCCTGGTTTTCCAGGATTTCCACCGGAAGCTGCTGCGGCGGCAGCGCTCAGCGCCGGCGGTTATCTGCCGCTGTTGGGCGTTGGCGTGCCCGGCTTTCCCGGCGTGGATGGCTTGAATCGACCGCCGTTGCGAATCTTCAATCCGGAGGCTTATTGTGAGCTCTGTAATAAGGAATTCTGTAATAAATATTTCCTTAAGACGCACAAGGCCAACAAGCATGGCATTTATGATCCGGCCGGCGATGCGGgcggcaataataataatagcaacagcgccaacaacaataatgctgCCAGTGGCATAAATGCTATGAATCAAATGTTTCAattacaaatgcaacaacagcaacaacaacagcagcagcaacatcaacaacaacaacagcagcagcagcaattgcAACTACATTTACAGCAAAAGAATGTTGCCGAAcagcagaaacaacaacaacagcaacaacagcttgAAGCTCAACAAGCGCTGCcagcgcagcaacaacaacaacaacttacgcCGCCAGCGCCACCTGCCGTCCATTGTGACATTTGCTCGAAAcgttttacaaatatttttgccaTGCGTCGTCATCGCGCTAAGATACACGAACAACGACGTGAAAGTCCGAATggcaccacaacaacaacgacatcagcagcagtagcaacgCCACAAGTTAAGTCagatcaacaacagcaacagacgAGCAGCAATGAGCCTGCAAGCAATGCTTTTGGCAGCAGCACTCCGACAGATGGCGCCAAACCCTTCCAGATGCCCGAGGGTTTTCGTCAAGATTTCACACTCGAACAGGAGGAGGTCTCCTTTACGCCGCAGCCCCGTAAATTGTCGccgcaaatgcaacaacaagcgCGCGATGCCAACTTCGCACACGACAAGTTGAGACGTCTGGGCGTGGTCAATCCGGAGGCATTCTGTGAGATTTGCTGCAAAGAATATTGCAATAAATACTTCCTACGCACGCACAAATGGAAGCGTCATGGCATATTTGTGCCACCGGAAGATCTCAAGGACGAGCAATTGCAGTTGGCACAGAAGATGGCCTGGCCCTTCATGAATCTGCCCGGCATGCCGCTCAATCTGATGTTGGCCAACGAGAAGGCAGTCGCGGCACAACGTATGCttgccgcagcagcagcggctaGTGTGAATGTGGTGCCGGAGCAAAGCGCACAAGACGAGCATAGCCAGTCACCGAAACGCATCAAGTTGGAACCGACCGAGCAGAGCGAACAGCAGCCGATGCAACAGGATGAGTACATGGATGCAAGCAATGCAGCAAACGCTCAGGCGCAAAGCGGCAGCATGCCGGGCACACCGGAGCCACAGCAGAAGTCACAACAGGCAGAGCTGTTGGCCAATTTGCCACCAAGCCCGGAGGCTGCCATGCAGAATCTGCAGAAGTTGCAATCGATGTTGCAGCAATTGAACGATTTGAATGGCAAACGACCGGTGGCATGCCACCTGTGCGGCCGTGAACTGGAGCATCAGTATGCGCTGCAGGCACACATCATGACGGAGCATGCCGGCTTAACGCCCGGCTTGGATGCCGGGCCGCTGGGCACATTCCAGCAGCAGTtctatcagcaacaacaaaccctgctccaacagcaacaacaacaacagcagcaacatctgCAGAAACTGTCGCCGACGGGTGGCTCACCGTTGACCACCGTCAATGAGCTGCGTTGCCAGCAATGCGAACGTGACTTCAATACGCCGCAAGAATTCAAACAACATATCGCCGAGGTGCATCTCCTACCCAGCGGTGGCAGTCCGCTGCGCGAGGGCTTCTTCACGCCCGAGCGACCCATCAATCCCAATGCGGGTGTTGGTGGCCTCAGTGGCGGTGCCAGCGCCCGACCGCCGTACACGATTACGCCCACGAGCAGCTATTGTGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAAACGCATATGCAACGGATGCACGGCATTGAGATTGAGAATGGCGCACAGATTGGCGGCGTCGTTTGCAACATTTGCAATAAGGAGCTCTGCAGCAAGTATTTTCTGCGTGTACACAAGCATAACACGCACGGCATCATCGAAGAGGGTGCACCCTTGCCACAGCCACGCGGCAGTAGCAGCAACAGTCAGAATGGCGTCAAGCTGGAAGCTCAGCAAGCACCGCCGCCGGTACCACAACCGCCAACCTCGCAACAGATCATGGAGAACGAACTGTCGCGTGGCCCAAATATGAGTCCCTTTGGCAGTGCAACCGCCAGCAGCTACCTCGACACCTGTCCGCTCTGCACGCGTCACTTCCGTAGTTTTAAGTGGCTGCGCTCGCATCTGATGAACGATCATGGCGCTGCCGGCATTGACAAGTTGCGCGAATTAGAGCAACAATACGGCGGCCTCAGCAAATCGAACAGTCCAACGCTCAAAATACCGAATGGTGTCTCACAGAGTGGCAGCGCTCCGACGCCGGCTTCAGCGCTTCTCAATCCAGCGAATCTGGCACAAGCGCTCCAAAATCTCAACGCTCAACATTTGCTCGAACAGAAGCCGCCCAAGCACATGCTCCCGGGCATGTTTGGCGCTGCGGTCGCCGAACAGGCGCTCCAGTCGCCACGCTACAAGGAGTATCAGTGCTCGTTGTGTAATTTTACGACGCCCTACTATGCATTCCTCTTCATACACGAGCGCTCGCATGCGATCACCGATGCTGCTGGCCTAGCCACCGAGCCTCAGACACTGGCCGCCGCTACATCGCAAGTCGGCGCCATTAATCAAGCGGACAAGACCGCCGAGGCATTGCCACTTGTGCAAGAAAAGTTAAAACATGAAACGCCCGAGCCCACCAATCTATCAACGCGTacaccaacaccaacgacCAGCACACCGAACAAGGCGTCACCAACGCCGACAACTTCACCGACACTGGAAGACGAAACGACCGTACCAACACCACAGCGACCGGCAAGCAAACATCAAAGCAGCTTGTCTCCAGTCATCGACAGTCCCACTGCCATTTACACGACGACCTCGTCGCTTACAACAACTGGCGGCAACTTGCCACCATCGTCTTCGTCGCCGCCGTCAACGCCGACACAGCCACCGCCGACACGCGTTCTCTCGCCAACTTCCACAACCACAAACGGTCCTCAATTACGGTCTGCGGCCACTTCGCCCATCGAATCGTTGCTCCAACAACGCATGCTCAGCGAAATGGCTGCAAAGAGCGGCAAGCCAACATCCTATGCGCTGCCAAAGCTTGACGATACAACATCGCCAGACGATCAGGAGGAATATCAAATGCAGGCATTTCACATTGAGTGCGTGGGCGAGGGCGGTAGCGTAGAGGATGCCGCATGCGCTGAGCGTCTAATGCCCGCCATCATCTATTTACCGGTGCGTAAGCCAATTGTTGGACAAGCCAAGCTCAGCTTCAATCTGACGCCCGCTTAA
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSTLNTQRNGNSNNNNTSHNINTNTTTNTTTSPTTSSTTHQYKQQQQQQQHHTTQNSRDEATSTTTINKTTTTPPPSVTTTTATAAISVPTSPTTTTTTTTMTAAKKQRKRSIAEALMLDGVGQDSGSNTNASNDANETEAFLRAADVNADDDAAGIDSEANAAAMNAVAAAANAAMQLRLLEAINDAAKKRRKQHNPSRHEALNLSGSEAGVAAAMSEANEQQEKETNHELSNVVVDYEEKLSKMFLPKSIEQLKEQFEMLQQKQQQQQQQQQEEVEQDIENISQSNDIRQSKLVDDAEALLDATKNPYQTYCKQCGENFETEFKLSLHMLHEHPASANGGLGEGNGSAMDANMAHGADNVSPLDFLASVKVKLERGDSPTGCNENEAPPTGQLDMQQQQQQQQFQMQQHHQQQQQLQQQHGLQATDLLSNGKDHWLNALPPPGFPGFPPEAAAAAALSAGGYLPLLGVGVPGFPGVDGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIYDPAGDAGGNNNNSNSANNNNAASGINAMNQMFQLQMQQQQQQQQQQHQQQQQQQQQLQLHLQQKNVAEQQKQQQQQQQLEAQQALPAQQQQQQLTPPAPPAVHCDICSKRFTNIFAMRRHRAKIHEQRRESPNGTTTTTTSAAVATPQVKSDQQQQQTSSNEPASNAFGSSTPTDGAKPFQMPEGFRQDFTLEQEEVSFTPQPRKLSPQMQQQARDANFAHDKLRRLGVVNPEAFCEICCKEYCNKYFLRTHKWKRHGIFVPPEDLKDEQLQLAQKMAWPFMNLPGMPLNLMLANEKAVAAQRMLAAAAAASVNVVPEQSAQDEHSQSPKRIKLEPTEQSEQQPMQQDEYMDASNAANAQAQSGSMPGTPEPQQKSQQAELLANLPPSPEAAMQNLQKLQSMLQQLNDLNGKRPVACHLCGRELEHQYALQAHIMTEHAGLTPGLDAGPLGTFQQQFYQQQQTLLQQQQQQQQQHLQKLSPTGGSPLTTVNELRCQQCERDFNTPQEFKQHIAEVHLLPSGGSPLREGFFTPERPINPNAGVGGLSGGASARPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGAPLPQPRGSSSNSQNGVKLEAQQAPPPVPQPPTSQQIMENELSRGPNMSPFGSATASSYLDTCPLCTRHFRSFKWLRSHLMNDHGAAGIDKLRELEQQYGGLSKSNSPTLKIPNGVSQSGSAPTPASALLNPANLAQALQNLNAQHLLEQKPPKHMLPGMFGAAVAEQALQSPRYKEYQCSLCNFTTPYYAFLFIHERSHAITDAAGLATEPQTLAAATSQVGAINQADKTAEALPLVQEKLKHETPEPTNLSTRTPTPTTSTPNKASPTPTTSPTLEDETTVPTPQRPASKHQSSLSPVIDSPTAIYTTTSSLTTTGGNLPPSSSSPPSTPTQPPPTRVLSPTSTTTNGPQLRSAATSPIESLLQQRMLSEMAAKSGKPTSYALPKLDDTTSPDDQEEYQMQAFHIECVGEGGSVEDAACAERLMPAIIYLPVRKPIVGQAKLSFNLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -