Poka018770.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- topi
- Assembly
- GCA_034638295.1
- Location
- CM067852.1:26515135-26516721[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0093 0.86 10.5 4.3 1 23 236 258 236 258 0.98 2 9 1.8e-05 0.0017 19.1 1.0 1 23 264 288 264 288 0.97 3 9 0.00027 0.025 15.4 0.4 1 23 295 320 295 320 0.94 4 9 0.0047 0.43 11.5 0.1 3 23 331 351 329 351 0.97 5 9 2.6e-05 0.0024 18.6 0.6 1 23 359 383 359 383 0.98 6 9 0.00015 0.014 16.2 0.7 1 23 389 411 389 411 0.98 7 9 1.1e-06 0.0001 22.8 0.7 2 23 418 440 417 440 0.97 8 9 3 2.8e+02 2.6 4.4 1 23 446 468 446 468 0.86 9 9 0.00045 0.042 14.7 1.7 1 23 474 496 474 496 0.97
Sequence Information
- Coding Sequence
- ATGAAAATCGAAAATTTAATAGATTTATGTCGCGCCTGTTTGTCACCGGTGGAAGCTAGTGAGAGTTACAATCTCTTTGAGACACCGGAGTTGTACAGCAAATTTCAAGAATGCACTGCACTTACGCTGGAGGCTACTTCTCCAAACGTTTTGTGTCCAAAGTGTTACACCAAAGTACACGACTTTCAAGAATTTCGAGATATGTGCATAGAGTCTGACAAAACACTTCAGAATTActtcttagataaggtacGGTGTGAACTTGATGACGAGAAGCCGGTGATTGACTTGGAATCAGCAACTAACACAGTGATGGTGGAAAATGAAGAACTCGATTCTCAGTATAAAGTTCGTCGGAAAAAGGGAAGTAAAATAAAAGACGAAACCGATCCTTTAGTGGTTCTCGATAAAGGAAATCCAGTTGAGCAACTCAGTGAACTCGTTAGTAATGGAGTTTTACGACGTCGACCAGGACGACCGCGGAagcaaccaaaaaagtttGGGGTTAATGAAGCATTAGCGCTTCTCACGTCAGTATCAGAAACAGAGAAGCAAGAAGTAGCTTCGAAGGATGCTGAGGAGGTTGTCGCATCTGAAACTATGTGCCGAAAAAAAGGACAACCGCTGAAGCTTGAGAAAATTACAAAGAAAAAGGCAAAATCTAAGAAAAATTCACGCGGAAAGCTGAAAGTAGAGACTACTTCATTTAAATGCGATTTGTGCCCAAAACGCTTTTTATCCGAACATTGCCTGGTCGCGCATAAACGATCACATGACGGTCTGGTGCCTTACCCTTGTACATATGACGGCTGTGACAAGGGCTTCAATCGACTACATTACCTTACTAGACATCTTGAAGTTCATAAGAGTAATAATTGCAAATTCGCCTGCGACCAACCTGGTTGCTTAAAAGAATATAAAGATAAGTCGAATTTAGTCTATCATTTGCGCAAAAATCACAATATTGGTCCCGAGTTTGAACCCCAGATTTGTGAGATATGCGGCAACTTCTTTAAAACCGCAGCCATACTTAAAGAGCATCGCATTACTCATCGAGACAAATTGGACCTTCCATATGTATGCGAAAGGGTCGACTGTGGGCGTCGTTTTGCTACAAAAGACCGATTCAGAGGGCATATGATGCGCCACGATGGTATTAGAAGATATGTTTGTCCTCACTGCGGTATGCGTAAGACCACGAGTGGCGAGCTTAAGGTGCACATCAACTATCATACTCTGGAACGCACATGGACGTGCAAATATTGCAGTAAGGTATTCAATAGAACTGCCAATCTTAATTTGCATGTGCGCACAGTTCACGAAAGAGCAAAGGACTATCCATGCCGCTTTTGTGATCGAACTTTTGGCAAGTTGTACACTCGAAAATGCCATGAAATGACGCACACTGGCGAGAAGCCGCATCAGTGTGCCGAATGTGGCAAACGGTTTTTACAAATGTCAGCTTTGAACACCCATCGAAAATTACACCTTAAACAGCGCAAGGAGGCCAGTGAGTCGTTCCGCtaa
- Protein Sequence
- MKIENLIDLCRACLSPVEASESYNLFETPELYSKFQECTALTLEATSPNVLCPKCYTKVHDFQEFRDMCIESDKTLQNYFLDKVRCELDDEKPVIDLESATNTVMVENEELDSQYKVRRKKGSKIKDETDPLVVLDKGNPVEQLSELVSNGVLRRRPGRPRKQPKKFGVNEALALLTSVSETEKQEVASKDAEEVVASETMCRKKGQPLKLEKITKKKAKSKKNSRGKLKVETTSFKCDLCPKRFLSEHCLVAHKRSHDGLVPYPCTYDGCDKGFNRLHYLTRHLEVHKSNNCKFACDQPGCLKEYKDKSNLVYHLRKNHNIGPEFEPQICEICGNFFKTAAILKEHRITHRDKLDLPYVCERVDCGRRFATKDRFRGHMMRHDGIRRYVCPHCGMRKTTSGELKVHINYHTLERTWTCKYCSKVFNRTANLNLHVRTVHERAKDYPCRFCDRTFGKLYTRKCHEMTHTGEKPHQCAECGKRFLQMSALNTHRKLHLKQRKEASESFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195509; iTF_01195487;
- 90% Identity
- iTF_01195509;
- 80% Identity
- -