Poka000537.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phortica okadai
Gene Symbol
RREB1
Assembly
GCA_034638295.1
Location
CM067848.1:6910739-6918508[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0009 0.084 13.7 1.0 1 21 284 304 284 306 0.96
2 13 0.0001 0.0097 16.7 0.2 1 23 316 338 316 338 0.98
3 13 2.8e-05 0.0026 18.5 7.5 1 23 344 366 344 366 0.98
4 13 0.12 12 7.0 0.9 2 19 737 754 737 754 0.97
5 13 0.011 0.98 10.4 0.1 1 23 973 995 973 995 0.97
6 13 3e-05 0.0028 18.4 0.8 1 23 1005 1027 1005 1027 0.99
7 13 0.00098 0.091 13.6 2.0 1 23 1033 1056 1033 1056 0.97
8 13 0.0035 0.33 11.9 2.0 1 23 1458 1481 1458 1481 0.95
9 13 0.0001 0.0095 16.7 0.3 2 23 1901 1922 1900 1922 0.97
10 13 0.17 16 6.5 6.3 1 23 1928 1951 1928 1951 0.96
11 13 1.6 1.4e+02 3.5 5.2 1 23 2076 2099 2076 2099 0.94
12 13 0.1 9.3 7.3 1.1 3 23 2162 2182 2161 2182 0.91
13 13 0.0013 0.12 13.2 4.6 1 23 2188 2210 2188 2210 0.99

Sequence Information

Coding Sequence
atgattgcaacgcaacaacaacaacagcaaacagcgACATATGATgaacgcagcagcagcaacaacaacaacaatagcacaacagcaacaacaacaactcaaataAAAATGGAGCGACGTGATTCAACGACATCGGAATCATCTGTCGAGCAACTTGACTTGGGTCGCACACCAAAGAAGCTGAGCACACACAATGCGGCAACATCGACGCCGCACATCactaatggcaacaacaacaacagcaatagcagcaacaacagtgccAGCCATCAGCTTAGTTTGGAGcatacgacaacaacaacaacaacaacgcgcaAACGTAAAATGCGACGCGCGCATGATTCCGATAACGATAACGATTGTTGTGATGATATGCTAATCGATGCATCGACAAAGCCAACAAGCGCCGATGAAGATGATAAGCaacgtcagcagcagcaaacaacaataacaacaacaatgctgacgccaccaacaacacaacgcacacacaaaagACGCGGCAGCAGCGCACGTCTGGACAAGCGCGCCGTTGTGCAATTGGTCGCCGACGAGCCCGGCAACACTTTACGCAAAAAGTTTCGCTTCAGTCGCAGCATcgatcatcatcagcagcagcaacagcagcagagcAACAATGAGTCGGGCTTTGTCGACGCCAGCGGCAATAGCACACAATATTTGTTGAATGCCAGCGATGCTAATGTCACGGCCGCTACTgtcgccgccgctgctgctgctgctgctgctgcggccgcTGCCTCAGTCTCACACAGCTCGTCCGGCTCGGCGGGCTCGTCGCCGCACGGCGTCTCTAGTCCCGAATCGTTGGCGGACGAGCACATGAAGTATGTCTGTCCGATCTGTGATACAGTCTCGGCGACTCCGCATGAGTTCACCAATCACATCAGATGCCACAATTATGCCTCCGGCGATACTGAAAATTTTACATGCAAAATATGCTCAAAGGTGCTCTCATCTGCCTCATCACTTGATCGTCATGTGCTTGTGCACACTGGCGAACGACCGTTTAACTGTAAATATTGTCATCTAACCTTTACGACCAATGGCAATATGCATCGTCATATGCGCACACATAAACAGCATCAAcagaatcatcatcatcaacgtcgTAACTCGAATGGAACAaagaataataacaacaataataatattaacaacaacaacaacaacagtagcaatGGCGGCAGCAatacaaccacaacaacaacacacgctTTAACGCCACTGCTAAGTGCCAGTGAAGGTGTTAAACATcagctacagcaacaacaacaacaacagcaacaaacagctgccgctgccgtcgccgccgtcgctgctgctgcgtcaTCAACAAATGGCGTCAAGCAACGTCGTTTAAACGGTTatagcggcagtggcagcggcagcggcagtggcggCGGTGGGGGCGGCAATGGCATAGAAAGTTACGAAAGTGATGATGGCAGTTGCTCAACAGATTCAACAAGTGCCAACAGTCAAAGCTCaactagcaacaacaataataacaacaaccataataataacaataataatagtaatcatcatcataataacaacaacaatttgaaagccaacaacaacaataatttgaaGCGCAAAAAGAGTGAACACAGCAATGATCTCTTGTTAGATGTTGACACCTCCGCCGGCTCAGTGAATAAAACTGAAGCTGTTGGTGCGACATCTGGCGGCAATGATGAACGTGATGATGAATTTACGCCGCTGATGAAGCATCGACGCGTGAAGACCACAATTAACAATAATGTAATCGCaaaacccaacaacaacaataataacaacaacgattgCGACATTGCTGATGACGATGAAGAGGCTAATGATGTTAATGatcataatgataatgatgacgaagATGAAAATGGCGGCTTTACTAAAACTAATCACGTTGaagatcatcatcatgatgatgctgtcgataataatgataatgatgatgatgttgttgacgacgacgatgatgatgatgatgatgacgttgcgACGGCCGCCATTATAACGAGCACACCCGATGTGGCAACAGTCGCCGCTGGCGCCGAGCATTCCAGGGATGCCGATTATGGTCCGATTATGGACGCTTGTCCCGTCTGCTACGTTGCCGATTTCGATTGCTTGCGCGATCTGGGCATGCACATGGACAATGCACATCCGGAGATACCGGCCAAGTGCCGAGAATGTTCGGTGGTCTTTAGTACGCATCGGCAATTGAATATGCATCCCTGTACGCAGAAGATACAAGCGGCCgtagcggcagcggcggcggcagcagcagcgctgCATGCACGCCAACGGCCGACAGGTGGCGCCAACGATGAAGCTATTGATAATTATGATATGGAACATGCTAatcacaataataataacaataataatgatgatgatgaggagcACGAACGCGATGAAcgtgatgttgatgatgatgatgatgtgggcattgatgacgatgacgaggaTGAGGAGGATGATCTTATGCGCGAGCATAACACAAGCGATGCCCTAAGCGAACAACACATTGCCGATCTGCAGCGACGCGAGCAATTCCTGCGTCATTTGTACTACAAGAACAAGGCTGCCGTGGCCGCGGGCATGCTGTCGCCCAATCCGGACAACGATGCCGAAACGCCATGCCACGTGGACGGCATGCTGATCAAGTATGAGACAAACGATACAAAACATTCGCATGACTCGAAGGATTTGGCGGATATACAATCGATCCTGAACATgacatcatcgtcgtcgacaTCGAACTTCCTCAAGAATTTCGAACAATCGGTGAACACGCCGTCGAGCAACTATAGCCTGGACAAGGATGAAGAGGAGGCGCAGGACACATTCACATCGGAATTTCGTAAGATGAAATTACGCGGCGAATTCCCGTGTAAGCTCTGTACGGCCGTGTTCCCGAACTTGCGGGCGCTCAAGGGACACAATCGCATACATTTGAGCGCCGTGGGTCCGTCGGGACCGTTCCGTTGCAACATGTGTCTGTACACGACCAGCGACAAGGCGGCGCTGGTGCGGCACATGCGCACGCATAACGGTGATCGGCCCTATGAGTGCGCCGTCTGTAATTATGCGTTCACAACGAAGGCGAACTGTGAGCGTCATTTGCGCAATCGGCATGGCAAGACGACCCGCGACGAGGTGAAGCGTGCCATTATCTATCATCCGTCGGAGGATTCGTCGTGCGATGATCCCGGCAAGAAGTTGCATTTGTTTACGGGCGCATGTGATTTTGATGACGATATGGATATGTTGGGTTTccagcaacatcatcagccCAAAGATCGTTCAACGCCCGTTTCCCATTTGAAGGATCTGTTGGCCGATGTtagtggtggtggtgttggtgttggtggcgCTGCCGCCGCACAAACGAAGCCCAAATTGCAGGTGAAGAGCTTGGATCTTTTGCTGGATAAATCGGCTAGTGGCgcttacaataacaacaacaacaatgaacaacAACGTTTGCATCAAGTGGCGGTCACAGTTGGCGAAACGGCGCCCATTGATCTGAGCATGGATGTGCTCGATCTCAGCAAGAAACCCAATGAGAAGTGCGAGAAACCAACAACGGATGATGCTGCGGCCGCAGTCGCTgcagttgctgctgccgccgctgctgctgctgctgcggctgccgCTACGGCTGAGCCGGATATGGCGGCGTTGGCCGATCCCAAATTCGATTTTGCCAAATTCGAAAAGAGTCAACAAATGCTAATcgctcaacagcaacaacaacaacagcagcagcaacaacaacaacaacaacaacaattgccatTCGTCGATCCGGCACAATATATACAACAACTATGCCAATCGATCATGTTCCATCCCATGAATCCATTGTTCCTGCAATATCCGCTCTTCAATCGCATGTTCGGCTCTGCCgcggccgccgctgctgccgccggCTTGCCCACCGTGTTGCCGCCGCTGGCCAACGCCAATGCAACGCTGCCGGGCGCCAACAGCAACGATgcagccaacaacaagctGCACACGTCGGCCAACTCACCGAACGCCATGGCCGGCAATGCACATGGCGCGCTCTTGCCACAGATCAGTCCGCTGCTCTCCGACAAATCGAACACCACGCCGTCATCGTTGGCCTCGGCCTCGCCCAGTTCAATCGCACAGCTGTTGCCCAAATCGCTGGCCTCGCCCACATCAACGGGCCAGGCCGCGCTCAATATACCGCGGCATCCGCACATCAGCACGAATGCCGTGCTGCCCGGCGGCCCCGTCAAGATGGTCATCAAGAACGGCGTGCTCATGCCCAAGCAGAAGCAGCGTCGCTACCGCACCGAGCGGCCCTTCGCCTGCGAGCATTGCTCGGCACGCTTCACGCTGCGCTCGAACATGGAGCGCCACGTGAAGCAACAGCATCCGCAATTCTATGCCCAACGCCAGCGCAGCGGTCATCATGTGATGCGCGGTCGTGGCGCCAGCAGCGCAGCGGCCATGAACAGCTTCAATCATCTGCAGGCCTACGCACAGGCACAGGCtcaccaacagcagcagcagcagcagcacgccAATGTCAGCGGTGGCGCTGGGGGCGGTGGTGGCATGGGTCCGACGCCGATCTCGGATCATGTCAAGTATGCCATACTGTCACAGCAGCTGAAGGCACGCCGCGACACCGATCTGTTGCAGCAGGCGTTGGCACATGGCTCCAGCAGCATTGCGCAGAATCATTTGCTGTTGGGCGCCTCGGCAACGACCAATGGTCATCATGGGCCGCCGGCGCCGCCGtcgcatcatcatcaccagcaacaacaacaacaacattttggcTATGCCAATGCGCACATGAATGAgctaaccaacaacaacaacaacaatggcaatgcCAATGGCATGATGGAAGACGATGAGCCGAAATTGATCATCGATGAGGATgaagatgacgacgatgatgatattGAGCAATGCGATGATGATATTGAGGAAATTCACGATGAACATGAATTGCTCGATGAgagcaaccaacaacaacaccaacaacaacagcaacatgaacTCGAACAACATATCGAATTGCCCAAATCATTGGAGGCAATCAAGCCGCAAAAGCTGCCACAAGCAACAtcctcaacatcatcatcctcGACATCTTCTTCGTCAACATCGccgttgtcattgtcgtcgACAGCAACCGCGAAGGCACACGATTCGGCCAAGAAGATGGCGGAAACGATTTTGGAACAAGCCATCAAAGCGGGTCAGTCCAACAGCAGCAAGCTGAATGCCGAGAACGAAGCCAAGCCGAAATCCTCTTCATCAGCATCGTCGGCGCCACCGCCACAGCCGCCACAACCACACACCATGAAATCAATGATTGCTCAGGCCGAATCGGTGGGCAAGTTCCTTAAGGAGGTCGCCAGCTCACCGTTCAAAGACGAATCTCAAGATCTTGTGCCCGTTTCGAAGCTGGTCGACAATGCGACCAGCAACAATCAGATGACCTTCAACAACTATTTTCGGCCCAGCGACGTTGCCAATCACATGGAACAGAGCGACGAAGAGGGCCTGGTCGCCTCGGGCAGCGCCAGCGAGAGCAACAATTCCGGCACCGAAGACGTAACCACACCGGCTGAGCCCAAAAAGAAATCAGCCTACAGTCTGGCACCGAATCGTGTCTCCTGTCCCTACTGCCAACGCATGTTCCCATGGTCGAGCTCACTGCGTCgtcacatactcacacacaccggCCAGAAGCCCTTCAAGTGCTCACACTGCCCGCTGCTCTTCACCACCAAAAGCAATTGCGATCGTCATCTGTTGCGCAAGCACGGCAATGTCGAGTCCGCCATGTCGGTGTATGTGCCAACGGAGGATGTCACCGAGCCGATACCGGTGCCAAAGTCCGTCGAAGAGattgagcagcagcagcggcaacgcGAGGAGGAGGAACGTCGCCGCAAAGCCGAAGAGGCGCAAATCGAACGTGAACGTCGCGAACAAGAGAAACGTCAACTGCAGGAACAGGAACAGCAGGAGCAGCTGCTCAAGCAGATCGCTGCCGCTGCGCACATGAGTCAGCTGAGCGTCGCTGCTGCGGTCGCTGCCGGCAAAGTTGATGCCAACAATAGCAATGCTGTTGCTGcggccgccgctgccgctgctgctgctgctgccgctgctgcagcGGCCAGTGATCTGCCGTACAAGTGTCATCTGTGCGAGAGTTCGTTCAGCGATCGTTTCCAATGTCTCGATcatatacaacaacagcatgagCAGGAgttcaaattgttgttggccaAGGGCGCCATCGAAACGGAACTGGAGCCACAGCCGTTGCATTTGGCCAGCCATGGCGGCGATGATGAGGAACGTgatgctgccgccgccgctgccggcGTCGCTGCTGTCGGCGGCAAGTCGGGCAAATATCCCGACTATAGCAATCGGAAAGTGATTTGTGCCTTCTGCATGCGTCGCTTCTGGTCGACCGAAGATTTGCGTCGTCACATGCGCACACATTCCGGCGATCGTCCGTTTCAGTGCGAGATTTGCTTGCGTCGCTTCACGCTCAAGCACAGCATGCTGCGGCACATGAAGAAGCACAACAATCGTCAGTACAATGGCGTCAATGGTCTGGGCGTTGAACATGCGCCTGGCGGTGGCAACTCTGGTTCGGATTTCTCCGATGATGAACAATTGGCAGCAACGCCAACACCgacgccaccaccaccaccgccgccgccgacatcgtcgtcgtcgacttcATCggccgcagcaacaacaacaacgacaactaaGTCAAGTGCTCTGGGCGCAATGCATCCACCAAAGAGCCAAGCCAATGAATGGCGCAGCAATCGTCTGTTGTCCAAACATGGTGAGCACAAAGAGAATATTGCTGCCGTCCATGATGAGCAACaacatggcaacaacaacaataatgctaacagcaacaacaacaacaacaacaatggtggtggtaacagcaacagcgatCTAATTGGCAACTTGCTCGGCATCAGCGATCAGGGCATACTCAACAAGCTTCTGTCATCGTCGTCGGCCGATGAGGCGGCCAAATTTCTTGGCGTTGAAAagtaa
Protein Sequence
MIATQQQQQQTATYDERSSSNNNNNSTTATTTTQIKMERRDSTTSESSVEQLDLGRTPKKLSTHNAATSTPHITNGNNNNSNSSNNSASHQLSLEHTTTTTTTTRKRKMRRAHDSDNDNDCCDDMLIDASTKPTSADEDDKQRQQQQTTITTTMLTPPTTQRTHKRRGSSARLDKRAVVQLVADEPGNTLRKKFRFSRSIDHHQQQQQQQSNNESGFVDASGNSTQYLLNASDANVTAATVAAAAAAAAAAAAASVSHSSSGSAGSSPHGVSSPESLADEHMKYVCPICDTVSATPHEFTNHIRCHNYASGDTENFTCKICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQNHHHQRRNSNGTKNNNNNNNINNNNNNSSNGGSNTTTTTTHALTPLLSASEGVKHQLQQQQQQQQQTAAAAVAAVAAAASSTNGVKQRRLNGYSGSGSGSGSGGGGGGNGIESYESDDGSCSTDSTSANSQSSTSNNNNNNNHNNNNNNSNHHHNNNNNLKANNNNNLKRKKSEHSNDLLLDVDTSAGSVNKTEAVGATSGGNDERDDEFTPLMKHRRVKTTINNNVIAKPNNNNNNNNDCDIADDDEEANDVNDHNDNDDEDENGGFTKTNHVEDHHHDDAVDNNDNDDDVVDDDDDDDDDDVATAAIITSTPDVATVAAGAEHSRDADYGPIMDACPVCYVADFDCLRDLGMHMDNAHPEIPAKCRECSVVFSTHRQLNMHPCTQKIQAAVAAAAAAAAALHARQRPTGGANDEAIDNYDMEHANHNNNNNNNDDDEEHERDERDVDDDDDVGIDDDDEDEEDDLMREHNTSDALSEQHIADLQRREQFLRHLYYKNKAAVAAGMLSPNPDNDAETPCHVDGMLIKYETNDTKHSHDSKDLADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYSLDKDEEEAQDTFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAVGPSGPFRCNMCLYTTSDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTRDEVKRAIIYHPSEDSSCDDPGKKLHLFTGACDFDDDMDMLGFQQHHQPKDRSTPVSHLKDLLADVSGGGVGVGGAAAAQTKPKLQVKSLDLLLDKSASGAYNNNNNNEQQRLHQVAVTVGETAPIDLSMDVLDLSKKPNEKCEKPTTDDAAAAVAAVAAAAAAAAAAAAATAEPDMAALADPKFDFAKFEKSQQMLIAQQQQQQQQQQQQQQQQQLPFVDPAQYIQQLCQSIMFHPMNPLFLQYPLFNRMFGSAAAAAAAAGLPTVLPPLANANATLPGANSNDAANNKLHTSANSPNAMAGNAHGALLPQISPLLSDKSNTTPSSLASASPSSIAQLLPKSLASPTSTGQAALNIPRHPHISTNAVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAMNSFNHLQAYAQAQAHQQQQQQQHANVSGGAGGGGGMGPTPISDHVKYAILSQQLKARRDTDLLQQALAHGSSSIAQNHLLLGASATTNGHHGPPAPPSHHHHQQQQQQHFGYANAHMNELTNNNNNNGNANGMMEDDEPKLIIDEDEDDDDDDIEQCDDDIEEIHDEHELLDESNQQQHQQQQQHELEQHIELPKSLEAIKPQKLPQATSSTSSSSTSSSSTSPLSLSSTATAKAHDSAKKMAETILEQAIKAGQSNSSKLNAENEAKPKSSSSASSAPPPQPPQPHTMKSMIAQAESVGKFLKEVASSPFKDESQDLVPVSKLVDNATSNNQMTFNNYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTTPAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVTEPIPVPKSVEEIEQQQRQREEEERRRKAEEAQIERERREQEKRQLQEQEQQEQLLKQIAAAAHMSQLSVAAAVAAGKVDANNSNAVAAAAAAAAAAAAAAAAASDLPYKCHLCESSFSDRFQCLDHIQQQHEQEFKLLLAKGAIETELEPQPLHLASHGGDDEERDAAAAAAGVAAVGGKSGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGDRPFQCEICLRRFTLKHSMLRHMKKHNNRQYNGVNGLGVEHAPGGGNSGSDFSDDEQLAATPTPTPPPPPPPPTSSSSTSSAAATTTTTTKSSALGAMHPPKSQANEWRSNRLLSKHGEHKENIAAVHDEQQHGNNNNNANSNNNNNNNGGGNSNSDLIGNLLGISDQGILNKLLSSSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-