Poka008552.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067849.1:43446039-43448837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5e-07 6e-05 23.6 1.4 2 23 290 311 289 311 0.98 2 12 4e-05 0.0037 18.0 2.4 1 23 318 340 318 340 0.98 3 12 0.0021 0.19 12.6 1.7 2 23 366 387 365 387 0.97 4 12 0.001 0.095 13.5 2.9 1 23 473 496 473 496 0.97 5 12 0.00021 0.02 15.7 1.1 1 22 503 524 503 524 0.98 6 12 0.004 0.37 11.7 1.5 1 23 533 555 533 555 0.98 7 12 2e-05 0.0019 18.9 3.8 1 23 568 590 568 590 0.98 8 12 2.4e-05 0.0022 18.7 0.4 3 23 599 619 597 619 0.97 9 12 0.011 0.99 10.3 0.9 3 21 647 665 646 666 0.95 10 12 0.038 3.6 8.6 7.6 1 23 710 733 710 733 0.94 11 12 4.6 4.3e+02 2.0 0.4 2 22 741 761 740 761 0.91 12 12 0.011 1 10.3 0.8 1 23 770 792 770 793 0.95
Sequence Information
- Coding Sequence
- ATGAGTTCTGCAATGTGCAGAACCTGTGAGAAGACCAGTGAACTTTACTTTACGTTGACTACACGCAATGAAAAGCATCCCGAAAAAACTTTATCCGATATGCTTTTGGAGTTGGCAAAAATTGATGTTACTTCGGACAACGTTGAGACTCTGCCACAGCAGTTATGTATCACTTGCACTCAGCGGCTGAAAAACGCCTACGACTTTGTATTTCAGGCACAGCAAATTAATCAAAGGTTGCTCGAAAGTGTTTGTGAAGTTGAAATTAAAGGAGATATTGATTGTCTATTAGAAGAGCCATTTGATACAACATCACATGAatttatacaaattaaaatggaAGCGGAGGCCAGCGAAGAAGCACCTATATTTGCAGGAACGGATCATTTGGTGGAAACGAAAATTGCTGAAAATGCAATTCCAAAGGACGAAAGTGTAGGCGAAGAAAGCGATGACCAGTGGCATATTAGTGATCCAACATCACATGAttttatacaaattaaaatggaAGTGGAAGCCAGCGATGAAGCACCTATATTTGCAGGAACGGATCATTTGGTGGAAACGAAAATTGCTGAAAATGCAATTCCAAAGGACGAAAGTGTAGGCGACGAAAGCGATGACAGTATTAGTGATCCAACATATGAGGAATTCAACGATGATATGCATAGGAGCAGCTCAAACAGTGACGACAGTGATGGACAAGAGGAACCAGTTCGACGGTTACGTAGCTCAAGGATTATGCCAGCCAAGCGTATTACGAAGAAGAAAACTAACGATGAAGATAGTGCTAGTGACAAGGAATATTTACCAACAAAGCGACGACGAGGACGTTCTCGCAGTTCTAATCGGCATTCCGAAGAAAATCAGTGTGATCAGTGTGACAAGGTGTTTATACGGAAGACAGACTTGACGCGGCACAAAAGAGTTCATTTGCCTGACGCAGATCGTTATGAGTGTCCGCATTGTGAGcgtaaatttttgcaaaaaagtaATATGCAGACGCACATTAAGGTGCACAGCAAGGAGGCGAATCCTGTCAAAGTGAAGACAGTTGACGTGCAGCTTTGTAAACCACACGGCTGTAAGCGTATAGAATGTATGATTTGTCATACCAAATATCGAAAAATTTCTGCCTTGCGTACGCATCTCAGCACGCATCAACATACAGTACCATTTGCAACATTAATGGGTGATGAAAACGCTATTGAGTCTATTTCACAGGCACTTTATCCAGAGGAAGAAACGCCGCTAATTGCAGTGCAGCTGATAAAACGCATCATGTCCGACATTAAAGCGAAACAATTTGAACGTTTTTATTCGATAACAAATGAAGCTGGCTATGAGCTGAGCTTGGAAAGTTCAGAAACAGATTCAGAGCCGGAAGCGGATAATTCTTTAAGCAAGTGTAGTAAATACAAATGTGAACTGTGCCCATTTGATTTTCAACGCAAATATCAACTGTACGCACATCAGCACGTGTATCATATCTGGAAAGAGGCGTCCTACACTTGTGCACATTGTAAAGCGCGTTTCATCAGCGACTCACTATTGGAGCATCACATGCGTACGCTGTGCCGGAACACACAGAAACGTTTTATGTGCCGAAAGTGTCCACAACGTTTTCGCTGGAAGGAGAATTTCCGAGCACACGGCAATACACACTGTGACACCGTTGATGTGAAACAGGTCAATACAACTTTTGAGTGCCACGAGTGCAACCGAAGCTTCCAAATGCAAAGGGAATTGACCCGACACATGTTCATGCATTCAAGTGAGTCCCCCATTTTTGGCTGTAAATGGTGTCCTCGAAAATTCTATCGGCCCGCCAATCTGACACAGCACTTGGAGCGTCATGGCATTGCGCCGCATGAGTTGGCCTACGCTGAAACACTAATCAATGTACACAAATACGCCAATGGAAAAAAGGTGATTTTGTGTAAAGTGTGCCATATAAAATTCGAAAGAATAGCAGAGCTACGCCATCATCTACAAAATGATTTGGCAACACATCACAGTTACGAATCCATGTTGAATTATTCGATAACAAATCAATTAGGCTTTGAGTTGCATCTGGAAGACTCCGAAACCGATGATGAGGCAAAAGTTGAGGGTGTGCCTGCATTGTATATGTGTGCGTTATGCCATTTGGTGTGTCGCCGTAAACATGAGCTCTTTCGACATCAGCACGCCATGCACAAGCTAGAGACGATAGAGTGGAAGTGCACACATTGTGTTTTCAAAAGTGTATCGGGTGACTTGCTAGCTTATCATAAGCGTACACAATGTgaaaatgtagaaaaaaagTACAATTGTACGGAATGTAATCTCAAATTCATGTGGGAGGATAACCTAGCGCAACACATACAACTCCATCATTCGGATAGTGCCGGGGCACCAACACTAAAAGCTGAATCAGCACAGAATGAAGCAAAGCCGATCTTTCAATGCATACCGTGCAATGATATGGTTACTAACCAGTGTGCCGACGCATATGTATGA
- Protein Sequence
- MSSAMCRTCEKTSELYFTLTTRNEKHPEKTLSDMLLELAKIDVTSDNVETLPQQLCITCTQRLKNAYDFVFQAQQINQRLLESVCEVEIKGDIDCLLEEPFDTTSHEFIQIKMEAEASEEAPIFAGTDHLVETKIAENAIPKDESVGEESDDQWHISDPTSHDFIQIKMEVEASDEAPIFAGTDHLVETKIAENAIPKDESVGDESDDSISDPTYEEFNDDMHRSSSNSDDSDGQEEPVRRLRSSRIMPAKRITKKKTNDEDSASDKEYLPTKRRRGRSRSSNRHSEENQCDQCDKVFIRKTDLTRHKRVHLPDADRYECPHCERKFLQKSNMQTHIKVHSKEANPVKVKTVDVQLCKPHGCKRIECMICHTKYRKISALRTHLSTHQHTVPFATLMGDENAIESISQALYPEEETPLIAVQLIKRIMSDIKAKQFERFYSITNEAGYELSLESSETDSEPEADNSLSKCSKYKCELCPFDFQRKYQLYAHQHVYHIWKEASYTCAHCKARFISDSLLEHHMRTLCRNTQKRFMCRKCPQRFRWKENFRAHGNTHCDTVDVKQVNTTFECHECNRSFQMQRELTRHMFMHSSESPIFGCKWCPRKFYRPANLTQHLERHGIAPHELAYAETLINVHKYANGKKVILCKVCHIKFERIAELRHHLQNDLATHHSYESMLNYSITNQLGFELHLEDSETDDEAKVEGVPALYMCALCHLVCRRKHELFRHQHAMHKLETIEWKCTHCVFKSVSGDLLAYHKRTQCENVEKKYNCTECNLKFMWEDNLAQHIQLHHSDSAGAPTLKAESAQNEAKPIFQCIPCNDMVTNQCADAYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -