Poka008547.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067849.1:43429318-43432336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00019 0.018 15.8 1.2 1 23 204 226 204 226 0.98 2 17 0.00012 0.012 16.4 1.8 1 23 233 255 233 255 0.98 3 17 1.7 1.6e+02 3.4 0.2 2 23 292 313 291 313 0.94 4 17 0.036 3.3 8.7 4.3 1 23 400 423 400 423 0.96 5 17 0.013 1.3 10.0 1.4 1 22 430 451 430 451 0.94 6 17 0.0031 0.29 12.0 0.4 1 23 460 482 460 482 0.96 7 17 0.00053 0.049 14.4 0.4 2 23 490 512 489 512 0.95 8 17 0.00036 0.033 15.0 3.7 2 23 520 541 519 541 0.97 9 17 0.00098 0.091 13.6 0.1 2 21 568 587 567 588 0.93 10 17 0.45 42 5.2 6.9 1 23 635 658 635 658 0.97 11 17 0.00037 0.034 14.9 0.3 2 23 696 718 695 718 0.96 12 17 0.00012 0.011 16.5 1.0 2 23 751 773 750 773 0.95 13 17 0.0012 0.11 13.4 0.2 1 23 787 809 787 809 0.95 14 17 0.013 1.2 10.1 2.3 1 23 815 837 815 837 0.99 15 17 2.2e-07 2.1e-05 25.1 2.4 1 23 843 865 843 865 0.98 16 17 4.1e-05 0.0039 17.9 5.2 1 23 871 893 871 893 0.98 17 17 9.2e-05 0.0086 16.8 0.2 1 22 899 920 899 923 0.90
Sequence Information
- Coding Sequence
- ATGTCAACAACTGTTGTCTGTAGAACGTGTTATAcgacaaattcaacaaaattgtTCAAATTGGAATCGTGTACGAAAAAATATCCAGACAAGTTCTTAAAAGACCTGCTGGTTGAACTCACAAAAATTGAGCTCAACAGCAAATATGATCATAAGTTGCCCCAGCATTTATGTAACATTTGCTTCCGAAAATTGGAAAATGCTTACGAGTTTGTTGATCAAGCGCGACAGGCGAATTTGAAGTTATTGGAGTACTTGAAATTAGAGTCTGATGTCAACCACAGCCTTAGCAAGGACTGCCTACAGGAGGCACCAATGGATGTTTGTACAGAACAGTTTCTAGAAGTAAAATTAGAAGAGAACGAGACTTCCTCAGATTTTGCAAATTCTTTATTAAAAGAAGATGTTCAAGACGAGAAGATAGACCAACAAGAAAGCAGCGTTGTTGATTGCTCATCAGATCCTTTAATTCCGGCCAGCAAGTCCACCAGTGAACTTGAATctaaacataaacaaattgaTTCTGAAGACAATTCGAGCGATTTAGATGAATTACCATTGCAACAACGAAGGAACACGCTAAgacaaaggaaaataaaaaacaaattgtttaaatgtgaTGAATGCGGTGAATCTTTTCGCTGGCTTCGTAATTTAAGTATGCATAAACGAAAGCACACATCCAAAACTGATTGGTATCCTTGCTCtcattgtgaaaaaaaattctggCGTAAAGATGGTCTGCAGTCTCACCTTAAAGTACACGGATTTGAGCAATCCAATCCGATAAAGTCAACAAGAACTCTGTCAGAACATAAACAAGCCAAGACAGTTGATGTTAATTTATGTAAACCGCACGGTTGCAAATTAATACAGTGCATGATTTGTCTCCAAAAATATGACAAAATCATTGATCTACGTAGTCACTTATATGAGCACccaaacaattttgttttcatggATCGTTCAGGGGAAACATTGCAAGAGATTGCCGATTCCTTTAATATAGATATTAAAGATGTTACCGAAGAACTTTTGGTCGCGCGTATACGTAAAGAATTGGACGCTGGTAATTTTGATAACTACTACTCCATAACTAATCAATCTGGCTATGAGTTGAGTTTGTCAAGTTCAGACACTGATAGTGAATTTGATATAGAAACTCGGGAACCCAAAGAGTCTAACACGCAAAGGAGTTACAATTGTGAACTTTGCAATGTTAAGTGTCGAAGAAAGTATCAAATTTTCGAACATCAAAGACTAAAGCATGATTGGCAGGAAGCCAATCATGTCTGCCGTCGGTGCGATGCTCGATTCGTAAGCCAACAAATGTTGGTACATCATTACAGGTCTCAGTGCAAAAATGCCAGAAAGCGTTTCATATGTGATAAATGTCCTCTACGCTTTCGATGGAAGCAAAACCTAAAAGCACATTATGTTGTTCATAGGAAGAAaACGGAGATATTAGAATGTATGGAATGTAAGCGAAGCTACGAAGACAAAAAGTCTTATACAATTCACATGCTTTCGGCACATGCGGATGAGTCTAAAATACTGCCATGCCATTGGTGCAATCGAAAATTTTATCGTCGAGACTATATGTTGAAACATCTAAAACGCCACGGAATTAATGAAAGAGACCTGCCACTTGCTAAGATATTGATTGAAGCGACTTCCAAAGCTAACGGCCATAAGGatatttattgtaaaatttgcaatttacAATTCGATCGCATTTCAGAGTTGAAAGAGCATATGATCATGGATTTGAAGCTGGACTTAATACAATATCAAAACATTGATTCTCTGTGCAATTATTCGATTACAAACGAATCTGGATTTGAACTGCATATCGATGATTCTGACACAGACAATGAAGCCGATGGAAGTACGAAATCTCCGTATACATGTGAAATGTGCAAAGTTCAGTGTAAACGaaagtttgaaatgtttcaacATCAGCACTCAATGCATCGCTTTGAGCAAATGCCATATTCTTGTGGAAAGTGTATATTTAAATGTGTATCAACGGATATACTTGAACATCACAAGCGCACACAATGTCTGAATACAGAGAAGCAATTGACATGCGAAAAATGTGGCTACAAATTTATGTGGCCGGAAAACCTTTCCCGGCATATGAATGTACAACATGGTGATTGTATTTCTACGGAACCCGCCGCAAACAGTGACATAGCTACCAAATCAAATATCACGACCCCAATTGCGAGTACAACATTAACGCCATTGCAATGTCCACATTGCGATCGAACTTATGTATTAAAATCCCGTCTTAGCAATCATATACGTGACGTACATGTTGAAGGTGATCGTAAGAAGAAGGAAGGCGATCGAAAATTCCTTTGTTCTTTGTGCGGCATTGAGTCGCAGTCAGCCTCAACGTTAGCTACTCATATGCGCAGGCATACCGGGGAAAGGCCTTTCAAGTGTGATATGTGCGAAATGGCTTTTCCATGTAACTCAGATATGCAGCTGCATCGTCGAAAGCACACAGGCGAGAAACCGTATCATTGTACTGTGTGTGGCAAGGACTTTGCACGCTCAGACAAGCTGAAACGACATATGTTAACGCACAGTGGACTGCGACCgtataaatgcaatttttgtgATAAATGCTACCGACAATCAAAGGATTTAAAGTTACACCTCCTACAACACACCGGTGAGACACCATTCGAGTGTAATGCGTGCGGTGAACGTTTTATACAAAATTCGGCGCTTGAAAAACATCGAACAATGAGGGGGCATTTCGATAAAATCTAA
- Protein Sequence
- MSTTVVCRTCYTTNSTKLFKLESCTKKYPDKFLKDLLVELTKIELNSKYDHKLPQHLCNICFRKLENAYEFVDQARQANLKLLEYLKLESDVNHSLSKDCLQEAPMDVCTEQFLEVKLEENETSSDFANSLLKEDVQDEKIDQQESSVVDCSSDPLIPASKSTSELESKHKQIDSEDNSSDLDELPLQQRRNTLRQRKIKNKLFKCDECGESFRWLRNLSMHKRKHTSKTDWYPCSHCEKKFWRKDGLQSHLKVHGFEQSNPIKSTRTLSEHKQAKTVDVNLCKPHGCKLIQCMICLQKYDKIIDLRSHLYEHPNNFVFMDRSGETLQEIADSFNIDIKDVTEELLVARIRKELDAGNFDNYYSITNQSGYELSLSSSDTDSEFDIETREPKESNTQRSYNCELCNVKCRRKYQIFEHQRLKHDWQEANHVCRRCDARFVSQQMLVHHYRSQCKNARKRFICDKCPLRFRWKQNLKAHYVVHRKKTEILECMECKRSYEDKKSYTIHMLSAHADESKILPCHWCNRKFYRRDYMLKHLKRHGINERDLPLAKILIEATSKANGHKDIYCKICNLQFDRISELKEHMIMDLKLDLIQYQNIDSLCNYSITNESGFELHIDDSDTDNEADGSTKSPYTCEMCKVQCKRKFEMFQHQHSMHRFEQMPYSCGKCIFKCVSTDILEHHKRTQCLNTEKQLTCEKCGYKFMWPENLSRHMNVQHGDCISTEPAANSDIATKSNITTPIASTTLTPLQCPHCDRTYVLKSRLSNHIRDVHVEGDRKKKEGDRKFLCSLCGIESQSASTLATHMRRHTGERPFKCDMCEMAFPCNSDMQLHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLTHSGLRPYKCNFCDKCYRQSKDLKLHLLQHTGETPFECNACGERFIQNSALEKHRTMRGHFDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196147;
- 90% Identity
- iTF_01196147;
- 80% Identity
- -