Basic Information

Gene Symbol
Trerf1
Assembly
GCA_034638295.1
Location
CM067849.1:1338093-1350225[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-09 5.6e-06 26.7 0.1 2 45 1810 1853 1809 1854 0.94

Sequence Information

Coding Sequence
atgGCAGCTATAAATACGGTGCAGAAGAGTATACATTTGCCATTGACGGGTTTAGCGACAACACGGGTCCAGCTTATGTGCAGCGCCTCCGTTGGcaacgccaccaccaccagcaacaacacaataagcggcaacaacaacagcagcagcagcagcagcattacCACCGAGTCGCAGCTTAGCGTGGGCACGCCAACGTTGACATTGCAATTGAGAGATGCAAATGTGCATGAGACAGACTGCCAGCAAAGAGCGACGCCACCGACGGTCTCAGCCAATGGCAATGTCGCAGCGACAACGCCATTAGAAAATGCACTGACTGTGGGCTATCCGGATCCGGATATGTTGGCCGATGTGCTGGGCACAATACAAACAGCATCGctcaaaaacaaccaaagtagtacaataacaacaacaacgacaacaacaacagcaggcgcaacaataacaacaacgacggtgGGCACAGCAGCAACTGTTAACAACCGTAATCCAAACAAAATCACAATCACACGACGCAATACGACCGCGAATAACGGCGCCAATCCAAAGGAGAGCAACAAAGTCTCCGTTTCGACATCGACAACGACATCGAGCGGCAAAACGAACACCAGTTATATCAAGAATTGCCTCAtacgcagcagcagctgcagcAACACGGCGACCAATGTCACGACACTGGCGCAAATAATgagcaacagcagcaccagcagcgCCGCCGCACTACTGAACAACgcgaacagcaacagcaattgcagcagcaacagcaactacaGCAACTCCTCATCATCGTCGACGGCCGCCAGCAGTTGCAGCCTCAgtctcagcagcagcaacgagaGCACGCTCAGCTCGAGCGGCAGCAGCCAACATATTGGCAACTTCAAGAGCGGCGGCGGCAATGGTAAGACCACAATTGGCAACAGCATCACCATCAGCACCGGCACTGGGACTCTGggcaccaacaccaacaccagcaACGTCTCGACAAGCACAACGTCCGCAACGTCCTCAACGACGGGCCTAAAGAAGCATCGACCCAAGTTATCCTCGCCAACACGACACGGTCCACAACAGTGTCAGatttgtagcaaaatttttggaaatgctTCGGCGCTGGCCAAACATAAATTGACGCACAGCGACGAGCGGAAATACATTTGCGCGCTCTGCTCAAAGGCCTTCAAGCGTCAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAACCCTATGAATGCAAGGCCGAAGGTTGCGGCAAGTCTTACTGTGACGCACGTTCGCTACGCCGCCACACCGAGAACCACCATGCAGGCATTGTAGCGCCACACAATCAGACATTGTCGCCCGCAGCCACCTCAACGACATCCAATGGCAATGCTGGCTCCGGCAGTGGCAGCCTTAGTCTGTCGCCGGCGACAGCCAGTGGCGATGCCAGTTCGCCGGACGGTGCCACCTGCATACGCACGTATATCTCAACGGGCGGCTCTGTGGTGGACGCCGCCACCGGTATTGCACTCACCGAGGAGCAGATCAAGGCTATTAATCTGCCCATCAAGACAGGCGTCACGTTGCTCTCACCGACAACATCGACTTCGTCGACCGCCTCGTCGGCGTCATCCTGTTCCACCGGTCACTCGGTTGCCGTCTCAGCCGGCTCACCGACAATTACGCTCGCCGACGGTGGCACCATCGAAGGTGAAGGCCTCACACGCGAGCAACTCGATTTGATTAGTAAGATTATGCAGCAGACGAAGCAGACAAGCGCACAGGTGACAGTCTCGTCGCCGACAAGCGTGAATTCGTACAAGATCAATACGGAAACCGTGCCGGCACAGTCCTCGGCAATGTTGCAGTCTCGGCCGCGCACTTGGAACATGCAGTTGTTAAACAATCCACAAAATGTCTCGATAACGGTCGATGACAGCACTGGCGAGTTGGTTGCGTCGTCGACGCCACCAGCCGAGCCCAAAGAGGAAGAGCTTAACCAACAGTTAGTGGCCACGATTAATCCACAGCTGTTGAACATTGTTAAGATTGATCAGAAGCCGGTTGAGTGTAATTTATGTCACCGTAAGTTCAAAAATATACCTGCCCTCAATGGGCACATGCGCCTGCATGGCGGCTACTTCAAAAAGGATCCTGAGACAAAGAAGAACGAGAAGAAGGAGTCCAATGGACCGCCACTACAGACAGCCAGCATAGGCGTGCGTGCACTCATCGAGGAGAAAATAATAAGCAAACGAAGCAAAGATCTGAATAAGGGTGCCTTTGTAGTTCCTGCACCACCCGGTAGCGTAGCCAACACAACCACCATCCGCCGATCGATTAGCGATTTGGAAAGTTTTATGAATCCCAAAGCGAGTAGCGCCAGTATTTCCTCAAATGTAGCCACGAGCACAACCACCGCGCTGTTGCCCGCCGCCACAACAATAAAGAGCGCCAATGGGCTCAGCATACAGCAGATCGGCTTGCCACAAAGCATCGAGATcttcagcagcagcggcaacaacaacaacagacaaccGCAGCACCAGAAGACCGTCAACGTTGGCACCGGTCCCAATACGCTGACAATAACTACGAATAATATCGTCACTTCGGCAGCAGCCACAATGAATTCACTGGCTGCAATGAGCAACAGTATCACGCATACTACAAACACCAAGAGCACGTCGACCGATCCCAAGGATTCGACGCTCATCGAGTTGCTTAAGCGGGGCACACGTATTGCCGTCACCGCGGCCACAAAAAAACCGCAACCCCAGACAAGTACAAATATGCTGCTGCATACCAGCGATGGCGGCAGCATTGGTGGCGGCCATGTCACACCCATGACAACGACTACAGCTGGCCGGCAAATCATTACAAACAATAACCGCACTGTGATTATACCATCCGACGTCCAGGTGGTGTCCACCAAAACCAAATCACTGAGCGCTACACGCAGTTCGACGCCGGCCAGCATCTCCTTAGCCGATGGCACGCCTCTCTCGCTGACCATTTCACCCAGCAGCGATAGCAATGGCGCCGATGTTTACACCGTTACATACACCAGTGACTCGGCTGCCCTCTTCGAGGATGCTGAAGTCTATAATGTTTCCGATACGGAGATGCTATTGCAAACGGTCGATACCATGGAGTTGCTGAACGCTGCCGATGATGAGGGCAGCCAAATCAAAAATGAACATTCCGAGTACACGCTTGTCAGTGAGCCGGCCGACGTTACGATGTCGTCAACGAACCTGGTAAAAGTCGAAACCAATTCCAGCTGCATTGCAAATCACGTTACCAGCAATAACTCCACacaaacgccaacaacaacgacgacaaccgCTTTGCCAACTTTCCAACAATTCCATTCCAAAGAGATCATTATGCAGAACAGCTCACAGATTCAGGCAATTACCAGCATGCGCTCCAACACGCTCACATTGCCCGCCGACCTAAAGCATCAGCTAGGCGTTTTGGCCTCACCGCTGCACTCGCCATTGGCATATCCTACACCACCTTCGAGCCATGAGAACGCTGCACAATCGTCACCCTTCATCGATGATGGCCAGCAATATGCGGAAGCGACTAATGCCTTCTTCGGCGACAAATGCAATACTGACTTCACGAACGTGTACTTCAAAACGAGTGAGGAAGAGGTGGAGGAAGCTCTAACGGAGAACgagaaaattttaaagttaaagaGCGTGCTGGAGGAGAGCGCATTCGACAATTCCATTAAGGTGGAGGACCTGCTCAACAGCACCGGGGACGGCACTGAGGTTGATTTGCGTGAATTTGCCGAGACAAATCTTTCGTTCCTGGATGAGGATCAAGAGTTCCTTAACGATTCGGGCAATGCAACATCACCGCTGTCGGAATCCTTCTTTACCAGTGGCATTGGCACAGCGGAAGAGGTCAAAGAGGTATTGCGTGAGGTTTTGCCTGAGGAAAATATACAGTTGAGTTCCGAGCAACAAGGCGAAAACATTATCGATCTGTATTATTTGCCTGGCTTGGGATTGCAATCACAAATGATGCCCAATTCTGAAGATCCGTTGTTGTCATCGTCGCCGCGTGAATTTGGGCAACAACGTCAAATTGTTTTGCCAcaaatgcaacagcagcaacagaccGATCAGGTAGCTGGCGTGGTCTTTCCACAGCAGAtgatgcaacaacaaacgcaccaacagcagcagcagcagcagcaacaacaacatcagcagcagcaacatcagcagcaacaacagcagacaCAACACAGCCATTCAGATTTTATGGTGACGACAATGTCGCCCAATGGCAACAATGCAATCATCAGCAATTCGATGCAGCTTAATGGTGTCCAGAGCCTTTTAATGCAAAACCAGACGCAATACGTCGACATGTCGAACACCAATGCAGCCGGTCAGCTCAATCAGCACACCAGCAACGATAACAATTCCGCTTCCGACAGTCTTGCGATGCAACAACACATGAATACCATCGACGCTGCCATGTTGCAGCCCATTATATACACTGGCAACGCTGTCAGCACCACCAATGCGAATGCTATCGACGACAAACAAGATCTGAATCTGGCAATTCAGTCAACAACAGGTCTCAACTTTTTATCCGCTGATTACAATAGTTCCACCAATCAACAGttgctgcagcaacaacagcagcctcTACACTTGCAGACCACCGGCTTCCAGTTTGGTAATGCCATGCAAGCCAAGCCAACGCTGATTACACCGTTGGCATTACATagccaccaccaacaacaacaacaacaacagtcgcagcaacagcagacgACAACTGTAACGCCCGCCGCAATGACCACCGTAATTTCCACCTTGCAGCCGCTTTCCAACCAAACGAACTCCATACTGAAGCGCCGTTTGCGTCCGAATGGATCCAGCGATTCCAATTCCCAAAACTTCTCCAAGTTCCATGCACTTTCGCCGTACCGCTCAAAGTTGCGCAAACCCTCGCGTACACACTACACGCCCGCGCCTATACTCAATCCCGATCGTAAGGGTCTAGGTCTGTATTGCAAGGTGCGCAAAGAGCTTGCTCAGGGCTTGCTAACTTTTGATGCATTTGACGACGACTTTGATGATCCGGTCGGCTTAGTTGATTTCTCCGATAACTCCAAAGTAAATCTTGGCTCTGCGTATCAGGCACAGATTCCCGTATGCAAAGCATTAACGGCCGATCTCAATACAATTGACGAGCCTGTGCACGCGGAATTGATGTGGGATCCGCACGTGCAAACGGATGAGAAGATTCTGATGCGCTACATTGATCTCAGCAAATCGTCAGCTGTGCCATTGGGCAGCCACTCCGAAGAGGTCGCACTGCAGACGTTACTCAAGGCCGAAGGCAATTCGGCTGCTGCTGTGCTGACACTCTTGCAGACGCAGTCCAGTTCATTCCAGATGAAGTGGTCTGCTTACGAGCTGGAGGTCTTTCTACGAGGTCTGGAGAAACATGGCAAGGATTTTGGCAAGATTGCAATGGAATTGAATACAAAGACCACCGGTGATTGCGTGCAGATGTATTACTTCTGGAAGAAACTCTGTGTCGATTATAAAGTATCGCATTTGAAGGCCGAGCCCGTGCTTCAGGCAGCACCCGCAAGTGAACTAAAGCCGTATGTTTGTGAGATTCCGGACTGCTCGGCGAGCTTCAGTTCGAAAGCTGCGTTGCACggacacacacgcatacacacctATGGCAGAAATGCTAATCAGaattccaacaacaacaacaacaacaacagcaattccAATTCCAATTCGTCGaacgcagcaacagcaaatttCGCAAGCGCACAAAcgctcaacaacagcaatggcagcgccaacagcaacagccacagccacagcaacaacaacaacagcaataccCTTACCCAAAGTCATCATAAtcctagcaacaacaacaacagcaatcagatgaacaacagcaacgccaCCAATGGCGCTGTTGGTCCCGGCTCGAAAGATCAGGGCAATACCAATAATTCCAACACAGCCCAGCGGGAGGGCGAATTTCCGTGCAAGGTGTGCGGCAAAGTttttaataaagtgaaaagtCGGAGTGCGCATATGAAAACGCATCGCGTACAGGATCCGGAagctcagcaacaacaacagcagcaacagcaacaacagcaacaacaacaaaatcaatcaGCCGCAGTAGCAGCGCAGCCGCCGCCGGCATAA
Protein Sequence
MAAINTVQKSIHLPLTGLATTRVQLMCSASVGNATTTSNNTISGNNNSSSSSSITTESQLSVGTPTLTLQLRDANVHETDCQQRATPPTVSANGNVAATTPLENALTVGYPDPDMLADVLGTIQTASLKNNQSSTITTTTTTTTAGATITTTTVGTAATVNNRNPNKITITRRNTTANNGANPKESNKVSVSTSTTTSSGKTNTSYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAAALLNNANSNSNCSSNSNYSNSSSSSTAASSCSLSLSSSNESTLSSSGSSQHIGNFKSGGGNGKTTIGNSITISTGTGTLGTNTNTSNVSTSTTSATSSTTGLKKHRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIVAPHNQTLSPAATSTTSNGNAGSGSGSLSLSPATASGDASSPDGATCIRTYISTGGSVVDAATGIALTEEQIKAINLPIKTGVTLLSPTTSTSSTASSASSCSTGHSVAVSAGSPTITLADGGTIEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVNSYKINTETVPAQSSAMLQSRPRTWNMQLLNNPQNVSITVDDSTGELVASSTPPAEPKEEELNQQLVATINPQLLNIVKIDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKNEKKESNGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPGSVANTTTIRRSISDLESFMNPKASSASISSNVATSTTTALLPAATTIKSANGLSIQQIGLPQSIEIFSSSGNNNNRQPQHQKTVNVGTGPNTLTITTNNIVTSAAATMNSLAAMSNSITHTTNTKSTSTDPKDSTLIELLKRGTRIAVTAATKKPQPQTSTNMLLHTSDGGSIGGGHVTPMTTTTAGRQIITNNNRTVIIPSDVQVVSTKTKSLSATRSSTPASISLADGTPLSLTISPSSDSNGADVYTVTYTSDSAALFEDAEVYNVSDTEMLLQTVDTMELLNAADDEGSQIKNEHSEYTLVSEPADVTMSSTNLVKVETNSSCIANHVTSNNSTQTPTTTTTTALPTFQQFHSKEIIMQNSSQIQAITSMRSNTLTLPADLKHQLGVLASPLHSPLAYPTPPSSHENAAQSSPFIDDGQQYAEATNAFFGDKCNTDFTNVYFKTSEEEVEEALTENEKILKLKSVLEESAFDNSIKVEDLLNSTGDGTEVDLREFAETNLSFLDEDQEFLNDSGNATSPLSESFFTSGIGTAEEVKEVLREVLPEENIQLSSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQIVLPQMQQQQQTDQVAGVVFPQQMMQQQTHQQQQQQQQQQHQQQQHQQQQQQTQHSHSDFMVTTMSPNGNNAIISNSMQLNGVQSLLMQNQTQYVDMSNTNAAGQLNQHTSNDNNSASDSLAMQQHMNTIDAAMLQPIIYTGNAVSTTNANAIDDKQDLNLAIQSTTGLNFLSADYNSSTNQQLLQQQQQPLHLQTTGFQFGNAMQAKPTLITPLALHSHHQQQQQQQSQQQQTTTVTPAAMTTVISTLQPLSNQTNSILKRRLRPNGSSDSNSQNFSKFHALSPYRSKLRKPSRTHYTPAPILNPDRKGLGLYCKVRKELAQGLLTFDAFDDDFDDPVGLVDFSDNSKVNLGSAYQAQIPVCKALTADLNTIDEPVHAELMWDPHVQTDEKILMRYIDLSKSSAVPLGSHSEEVALQTLLKAEGNSAAAVLTLLQTQSSSFQMKWSAYELEVFLRGLEKHGKDFGKIAMELNTKTTGDCVQMYYFWKKLCVDYKVSHLKAEPVLQAAPASELKPYVCEIPDCSASFSSKAALHGHTRIHTYGRNANQNSNNNNNNNSNSNSNSSNAATANFASAQTLNNSNGSANSNSHSHSNNNNSNTLTQSHHNPSNNNNSNQMNNSNATNGAVGPGSKDQGNTNNSNTAQREGEFPCKVCGKVFNKVKSRSAHMKTHRVQDPEAQQQQQQQQQQQQQQQNQSAAVAAQPPPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01195935;
90% Identity
iTF_01195935;
80% Identity
iTF_01195540;