Poka014925.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- bab2
- Assembly
- GCA_034638295.1
- Location
- CM067851.1:33527191-33529477[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 2.3e-06 27.5 0.0 2 42 423 463 422 466 0.87 2 2 4.9 6.6e+03 -2.7 0.9 4 20 572 587 572 587 0.86
Sequence Information
- Coding Sequence
- ATGGGCGGACCGCCGCCGTCGGTTGCAGCGCCCGTCGTGCCGCCAACAGAGGGCCAAACATATTGCCTGCGCTGGAATAACCATCAGACAAATCTCGTACAGATCCTGCATGCGCTGCACGAGGTCGGCAGCTATGTCGATTGCACGCTCGTCGTCGACGACGATCAGTTCAAGGCACACCGCGTTGTGCTCGCCGCCAATTCGCCTTATTTCCAGACCATATTGCAGGATGTGCCGCAGGACTATTGCAGCATTATATTGCCGGGCGTGAAGGGCTTTGAGATTGCTGCGCTACTGCAGTACATGTACACAGGCGAGACGACGGTGACAAAGAGTCAGGAGCCGGAAATATTGCGCACCGCCAAGGAGCTGCAGGTGAAGGGTCTCTATGACAATCTAATGAAATTCAATCACAAAGATACGCTCGCTGAGCATGGTCCTTCGGTGCCGCAACCCTATCCCAGTTCGACTGGCACAGCGCCGCACACACCCTACTTGGCGACCTCCTCATCCTCGGCAGCTGTTGGCGTGGGCGTGAAGAACGGTGGCAGCTTGAATAATGGTGGCGTTGATGCCTTTGCCCCTGGTGCTGGCGCCGCTGTTGGTCAGCACAACTCCTCCTCGGTGATCTCAACCTCAACGAATATATCACCCAGTGCTGCGATCTCAAGCAGTTCCTCGCCGCCCTACAGCAGCGGCGCTGCTGGCTACCACACGCAGTCCCAGCCGCCGTATGCGCCCATCTACCGCAAGTCGCCTGGTCccaccgctgctgctgccgccgccgctgtcGTTGGTGGCGCTGTTGAACAGTCGCCACAAACTGCCCCCGCTGCCGGCGAGCGCGGTCAGTGGCCGCTTTCGCcctctgcttctgctgctgccgcaGCCGCCATGCTGAACTCCGTCTACGAATCCGCTGCTGACATGAATCCGCTCAAACGCAAGAAGCTCTCAGCTATCTCAAGCATGTTCATGAACCGTGACACGCCCATATTGCGCAATGTGCTCGCCAATCCCGCCGACTCCTCACAGCCAAGTCCGTTGCTGTTGCCGGGCGTCTTCAAGGGCGACAAACAGATTGAGAAGCACTCACTAGCacatggcagcaacaacaatcaaagctTCAATGGCTCCGACTATGGCAGCGAAAAGTACAAGGACGAGCCACTCTCGCCGCACACTGATCGCTCCTTCGACGATGAGACCGGCGGTGGCAGAAACTCGGACAAGAAGCCAGAGTGGAAGCGCTACAAACAGTACACACGCAACGACATGATGTGCGCCATTCAGTGCGTCCGTGAGGGCATGTCTGCGCTGCAGGCCTCGCGCAAATTCGGTCTGCCCTCACGTACGCTGTACGACAAGGTGCGTAAGCTCAACATCAACACTGGACGCGGCACAGGACGCACGCCCAAGCGTAGTCCACCCAGTGTTGAGTCCTCTCCTGCATTCCCTTACGCCTCACATCACAACTACGGCCAGGGTGACGGCTATGCCGGCCCTGATGGCAACGCTGTGCACGATGAACGTGAGCATCCACATAAGGAGCACTCGTCTCATCACCAGCACCATCACCGTGTCGAATCGGCACACCACATGCCACCCACCATACCGCACTCCGCAGCAGCGCTGCTGGATCACGCGTTCTTGCAACAGGCGCTCGAGAATCGCGGTGGCGACATTGCTGGCCGTGAGGCACTGCACGCCATGGCGCTGGCCGCAGCCGCACATGCCGCCGCAAATCGCATGTCAACGAGCCCCGGCTCAAATGGACACGACGCACGTTCGCCGAGTCCTTCGCCGGCCCGCTATGCCGCCGATGAACTGCACGAGAAACAATCGCCGCAAACGTCGACACAGCCACAGGCACAGCCCGAGTTCCGCATGATCAAGCCCGAGACAATCGAGCGTGAGGAACGCGACGCTGACGATGAAGACGATCATGTCGAAGATCTCTCTATTGCACGCAAGAAGCGCAGTCCAAGCAAACGGCCAGAATCGCCTTACGCGCTGCCGCCACGCCACGCTACGCCCACACCCATGGAGACGACAACGACTGGCGTCATTGTGCCGCCCCTGAGCAGTAAACTGCCCACGTCTACCAATGGTGGCGGTGATCCGGCCAGCGCCAGCGATGATTACGAGCCGCTCGCTGTTGTGGCCAAGCGCGAACGCGAACTGCATAGCGAGGATAACCGGGACAGTGACTGA
- Protein Sequence
- MGGPPPSVAAPVVPPTEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDDQFKAHRVVLAANSPYFQTILQDVPQDYCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHKDTLAEHGPSVPQPYPSSTGTAPHTPYLATSSSSAAVGVGVKNGGSLNNGGVDAFAPGAGAAVGQHNSSSVISTSTNISPSAAISSSSSPPYSSGAAGYHTQSQPPYAPIYRKSPGPTAAAAAAAVVGGAVEQSPQTAPAAGERGQWPLSPSASAAAAAAMLNSVYESAADMNPLKRKKLSAISSMFMNRDTPILRNVLANPADSSQPSPLLLPGVFKGDKQIEKHSLAHGSNNNQSFNGSDYGSEKYKDEPLSPHTDRSFDDETGGGRNSDKKPEWKRYKQYTRNDMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNINTGRGTGRTPKRSPPSVESSPAFPYASHHNYGQGDGYAGPDGNAVHDEREHPHKEHSSHHQHHHRVESAHHMPPTIPHSAAALLDHAFLQQALENRGGDIAGREALHAMALAAAAHAAANRMSTSPGSNGHDARSPSPSPARYAADELHEKQSPQTSTQPQAQPEFRMIKPETIEREERDADDEDDHVEDLSIARKKRSPSKRPESPYALPPRHATPTPMETTTTGVIVPPLSSKLPTSTNGGGDPASASDDYEPLAVVAKRERELHSEDNRDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195369;
- 90% Identity
- iTF_01195369;
- 80% Identity
- iTF_01195369;