Poka019299.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067852.1:32257962-32259516[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3 1.8e+03 -0.9 0.0 3 16 220 233 219 235 0.89 2 4 1e-14 1.4e-11 44.2 0.0 3 41 333 371 332 374 0.92 3 4 0.016 22 5.2 0.0 27 37 404 414 395 419 0.90 4 4 9.7e-18 1.3e-14 53.9 0.0 2 41 441 480 440 482 0.94
Sequence Information
- Coding Sequence
- ATGGGTCACACGTCGACGTTAATGGAGATAAATCAGTCTTTACGTGACGATGCCGCGAGTTGTGAAGTGACTTTAGTCGCAAAGGATGGTTGTACAGTGCGCGCTCACCGATTTGTGTTGAGTACTTGCAGTGACCTTATGCGAAATGTGTTGGTGGATGTGCCACAAGGGCAAGAATGTACCATTATGCTGCCGGAGATAAACGGGTCACTATTGGATAGTATGCTTTCATTTATATATGTCGGTGAGACCAACTTGCCATCGTCCAGCCTAACTGAATTTCTTGAAGCGATAAATCTTCTTGGCATTAAGTCGGCGATTAGTTTTGAGTGTAGCGCCGCAAGTTTAAGCGCAAGTGGTGTAGCAATCGGTGAGGGCAGTGCAGAAGGCACAATGGATGTAAAGGCAATTAGCGGTTTACAGATCACACAAGAAGAGTTACTTGAAGAAGATGGTGTAGAAAAGCTGGTTgTCAGCAACGTtatggaacaacaacaagcaagcgCGCCGCGTGAAATGGAATTTCTAGACGTATACAGCGAGCAGCCAAAAATCACTTACTCTATAGAACACATGTCTGGAACTGGTGGCGGCGGAGAATTTATATTAACAACTGACAATGCAAACACATTCACACTGACGCAAGCACAAGCCGGTGATAAGTTGGCTGACGCAGCGTCATCCGTAGTTGAGGGTGGTGAATTGGTTGAAGATAACGATGTCTGCGAGGATGTTGACGGATCGAATATAATTGAAGAGGAGTATAACAGTGGTGGAGAGCCTTTGATGGATTTAAGTGGCACAGATGTCGAAATGAGCGATGCAGCTGATACGGATATGGCACATGTAGAATCGGGCGAAGCAGATGCACAAATGATTGCTGCAGCACGAGCCGCTGTAAAAATTCGAACAATGAAAGCGAAACGCGATCAAAAACACACCCGTGGTGAGGGTACTACAAAAAAGAGGATCAGAACAAAGAATCCCATCGAAGTTGACAATTTAGAATTAGCTGCACACGCTGTATTAACAGAGGGCTTAAGTTTACAGAAAGCGGCAGACAAATATGACATCTCAAAGACAGTGTTGTGGCGACGAATGCGTAAGGATCCAGACTACGCAAAAACAGGTCGAGAAAGACCAGCACTCGCACTTGCCTATGAACGGCTGAAAAAGGGAGATTCGCTAAAGAATATAAGCAAGGATCTAGACATACCAATGTCAACACTACATCGTCACAAAGTACGTCTTTCAGAGGAGGGTCGGTTGCCACAATTCGTTGCCTGTCGCCGCAGAGATTCGACACCAAAAGACGAGCTTAATGAGAAACTTGCCAAGGCAGTGCATGCCTGTGTTCATGAGGGGATGTCACAAAATCATGCCGCCACAATTTTCGAAATAGCCAAAAGTACGTTGTGGCGTCATCTGCGACGACGTTTGGCAGAGGCAGAACAGTCGATGGAAGAATCTGAAGAAATCAAAGAAGAGGTTATCTAA
- Protein Sequence
- MGHTSTLMEINQSLRDDAASCEVTLVAKDGCTVRAHRFVLSTCSDLMRNVLVDVPQGQECTIMLPEINGSLLDSMLSFIYVGETNLPSSSLTEFLEAINLLGIKSAISFECSAASLSASGVAIGEGSAEGTMDVKAISGLQITQEELLEEDGVEKLVVSNVMEQQQASAPREMEFLDVYSEQPKITYSIEHMSGTGGGGEFILTTDNANTFTLTQAQAGDKLADAASSVVEGGELVEDNDVCEDVDGSNIIEEEYNSGGEPLMDLSGTDVEMSDAADTDMAHVESGEADAQMIAAARAAVKIRTMKAKRDQKHTRGEGTTKKRIRTKNPIEVDNLELAAHAVLTEGLSLQKAADKYDISKTVLWRRMRKDPDYAKTGRERPALALAYERLKKGDSLKNISKDLDIPMSTLHRHKVRLSEEGRLPQFVACRRRDSTPKDELNEKLAKAVHACVHEGMSQNHAATIFEIAKSTLWRHLRRRLAEAEQSMEESEEIKEEVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01196104;
- 90% Identity
- iTF_01196104;
- 80% Identity
- iTF_01196104;