Preg005846.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01166784.1:13819-15512[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9 3.6e+04 -4.1 2.3 5 10 13 18 13 18 0.91 2 11 0.00011 1.4 10.1 16.5 1 18 24 41 24 42 0.98 3 11 1.2e-10 1.4e-06 29.1 14.5 1 19 51 69 51 69 0.98 4 11 0.14 1.7e+03 0.1 11.8 9 19 114 124 105 124 0.87 5 11 0.0065 80 4.4 5.2 3 11 137 145 127 146 0.85 6 11 0.25 3.1e+03 -0.7 0.9 6 10 205 209 204 209 0.90 7 11 2.5e-06 0.03 15.3 4.5 1 11 215 225 215 226 0.96 8 11 0.58 7.1e+03 -1.8 3.1 6 11 242 247 239 248 0.85 9 11 0.0021 26 6.0 16.2 3 18 255 270 254 271 0.91 10 11 3 3.7e+04 -4.6 2.1 9 13 277 281 276 281 0.72 11 11 2.1e-07 0.0025 18.8 12.9 1 18 322 341 322 342 0.91
Sequence Information
- Coding Sequence
- ATGCATGAAAAAGAATTGCCATGTTCCAAAGAATTCACATGTGAAaccaaatgtaaacaaattcgAGATTGTGGCAAACATCCATGTAATCGTaagTGCTGCGATCGAAATTGTCCACCTTGTGATAAAGTGTGTGGTAAACCTTTATCGTGTGGTAAACATAAATGTCAATCGATTTGTCACAAGGGACCCTGTTATCCATGTCAACAAAAATCGCAAATTAACTGTCGCTGTGGTAAAACTAAAAGAAGCGTACCTTGTGGTCGAGAGCGTACAGCACGTGTAGTGTGTTTGGAACCTTGTCGTATACCCTCAAAATGTCACCACGAAAATAAACACCGCTGCCACAAAAATGAATGTCCACCTTGTAGCCAACCTTGTGGCTTACCAAATGACACTACCAAGTGTGAACACAAGTGTATGGCAAAATGTCATGCATCTGTTAAGGTAGCTAAAAAGTCAAATCTAGATACTACAAGTATATGGGAGCCTACTAAACAGtttgaatttaaacaattgcCTCATCCGCGTTGTGAACAAAAAGTTAGCGTAACTTGTATAGGTGGTCATGAAGTAGCCGACTGGCCATGTTGGAATTCAAAACCTACGTCTTGTCAGCGTTTGTGTAACCGTACATTACGTTGTGGAAATCACAAGTGTGCTCTAGTCTGTCATGCAGTGCCGGATATAACAAACATGGagCAACAACCTGGTTGTGCTCCATGCGAAGAAGGTTGTCATATTCCACGACCAGAAGGATGTACTCATAACTGCCCTAGACCCTGTCACCAACCACCCTGTTATCCTTGTAATGTTTCTATTAAAACTAAATGTCACTGTGGTCTAATGCCCATTGTGTACAAATGCAGCGATTATTTCAATACAGAAGGCAGTGAAGGTGAAATTttggaaagaaaagaaaatttaaaaagctgtGGTAATAGATGTTTGAAGAATtaCCCTTGTGGTCATCGCTGCACCGCAAAATGTCATTCTGGTCCATGTCCATATCCCGAATCCTGTCGCAAAAAAGTACGCATCTACTGTGATTGTAAACGTTTAAAGTTGGAAATTTCTTGTGACAAACATCGCGCTGGTATGCAAAAACTACAATGTGATGAAAATTGCGTGGAAACGCAAAAAATTCTAGAAGAAGCTCGACGAAAGGAAGAAGAATTACGTCGCAAGCAAGAAGAAGAAAGAAATCGTGTAGAAGTAGAACAATTTGAGAAGAAGTTTAGCAAGCGCAAACCCAAAGAACGTAAAACATTAGAAGTGAAACAAAAGAATCCCATTAATTGGAAACTTTTGGGTGTATATGCAGGCATTTTGGGAGCTGTATTGTTAGCTGTTGCTTTAGCTTTTTACGAAGATCATTAA
- Protein Sequence
- MHEKELPCSKEFTCETKCKQIRDCGKHPCNRKCCDRNCPPCDKVCGKPLSCGKHKCQSICHKGPCYPCQQKSQINCRCGKTKRSVPCGRERTARVVCLEPCRIPSKCHHENKHRCHKNECPPCSQPCGLPNDTTKCEHKCMAKCHASVKVAKKSNLDTTSIWEPTKQFEFKQLPHPRCEQKVSVTCIGGHEVADWPCWNSKPTSCQRLCNRTLRCGNHKCALVCHAVPDITNMEQQPGCAPCEEGCHIPRPEGCTHNCPRPCHQPPCYPCNVSIKTKCHCGLMPIVYKCSDYFNTEGSEGEILERKENLKSCGNRCLKNYPCGHRCTAKCHSGPCPYPESCRKKVRIYCDCKRLKLEISCDKHRAGMQKLQCDENCVETQKILEEARRKEEELRRKQEEERNRVEVEQFEKKFSKRKPKERKTLEVKQKNPINWKLLGVYAGILGAVLLAVALAFYEDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -