Basic Information

Insect: Phormia regina
Gene Symbol: ush
Assembly: GCA_001735585.1
Location: MINJ01182127.1:61132-66923[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.077 8.1 8.1 0.0 6 20 245 259 241 261 0.95

2 8 0.0004 0.042 15.3 0.8 1 23 316 338 316 338 0.98

3 8 0.066 7 8.3 1.0 2 21 367 386 367 387 0.92

4 8 0.069 7.2 8.3 2.9 2 21 796 815 795 816 0.93

5 8 0.013 1.3 10.6 0.0 3 21 857 875 855 876 0.91

6 8 0.17 17 7.1 0.1 1 23 963 985 963 985 0.97

7 8 0.018 1.9 10.1 1.4 1 23 991 1013 991 1013 0.99

8 8 0.6 63 5.3 0.7 2 20 1174 1192 1173 1194 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.077	8.1	8.1	0.0	6	20	245	259	241	261	0.95
2	8	0.0004	0.042	15.3	0.8	1	23	316	338	316	338	0.98
3	8	0.066	7	8.3	1.0	2	21	367	386	367	387	0.92
4	8	0.069	7.2	8.3	2.9	2	21	796	815	795	816	0.93
5	8	0.013	1.3	10.6	0.0	3	21	857	875	855	876	0.91
6	8	0.17	17	7.1	0.1	1	23	963	985	963	985	0.97
7	8	0.018	1.9	10.1	1.4	1	23	991	1013	991	1013	0.99
8	8	0.6	63	5.3	0.7	2	20	1174	1192	1173	1194	0.91

Sequence Information

Coding Sequence: ATGAATGGGAATGattccaAAGATTTTAATACCAATAATTCCACCAAGATAATGGATGATCATATTGATGAAGATAGAAGAACTCCTCAAAATAATCATTATCAAACAAAAGAGACTGATATAGTAATGACAGAAAgtcaaaatatagaaaatattgaaatggaGTATGATAACAAGAATGATGATGTCGACTCACAACCTCCTCAACATAAGCGACCAAAAATGGAATTGGATGAATCTTATAGAAGAAATAGTACTCCTGTGCAATCTCCTAAAGCTAGaactacagaaaattcaaatgaCTCCATTAAATGTGatgattttcaaaatcaaatagATGAATCTAATTCAAAAGATCGTAGATCTACTAGCCCTAGGACCACAACACCTGCTCTGAGTCCTTCCAAGACAGAAGAAGTTtcgaatgaaaatatttgctcTCCCTCATCGGGTTCGATGCCCAAATTAAGGCTTAATGCTTTATTGGCTTCAGATCCAGCGCTCATGCCAGATGCTAAAGATTTAAAGGTGGTACATGAGGAAACACAAACTCAACAAAGAATAGCACGTTTAGAACAACATTTACAGCAACAATTGCAAACAGAAGATTTGCCCACAAATGAAACAGAACACTTAACATCCGCGTCAGCAGCATTAGTGGAACCAGTTAAAAAACCCTTGCCCACCCCAGTAGAACAACCACAACGAATGAAAGTTTTTATGTGTATACCCTGTGGTATTGGTTTCAGTTCTCCTTCCACTTTAGAAGCTCACCAAGCTTATTATTGTTCTCATCGACATAAGGAAACAGACGAAGATGGTTCATTATCCGCGGCCATAGCTGAAAAGACATCAGCCTCTCCTTCACCAGCCAATAATCCATCGGCAAGTATTTCTTTGGTCCCAGCAGAACCTGCAACAAAAGTTTCCAAAACAGGAAAACAATATGCCTGTACACAGTGTTCGTACAGTGCTGATAAAAAGGTATCGCTTAATCGTCATATGCGTATGCATCAGACCTCACCAGCGCCAAGCTCCAATGCTTCCAATAACGGCAGTGCCATAATGGAAGAAAATTCTAGTCAAcaGGTAGATCGTTACTGCAGCGATTGTGACATACGTTTTAATAACGTTAAAACCTATAGAGCTCATAAGCAACATTATTGTAGTTCCAGAAGAACAGAGGGGCAATTAACGCCCAAGTTAGAAGTTTCCACCACTTCGACTACACCCAAAGTTCCAGCAGTTGTCAGTGGTGCCATAAGTCCTCAGACCCGTACCAAAACACCTACACCTGCTATGGTAGCAGCTGCAGCGGCGGCAGCAGCAGCCGCTTTGCAACAGCCACCAGCAACACCATTTCTAGCTTTGCCCACAAATCCCATACTGATCATACCATATTCTTTAATACGTTCAGCTAGTCTAATAGCAGGACCTTTATCATCACCCTCCCCAGCTGTGGTGAATCCCGATACCACATGCTTCACTTTGGATAATGGCAATTTGAAACCTTTAGCTAcagctttaaatataaatgctcTAAATGCTGCTTCTACGGCAGCTAATAATATAGCAACAGCAGCCGCTGCTGTAACAGGACAACAAATAAACGTAGTTGATTCTACGCGTCAAACAAATACTACGGAAACACTACTAACTGAAAAGAATGTTAAACGTAATGTAGATGAATCCACAGAAAGTACTAACAAAAGAAAAGGAGAAGGTTTTAGAGAATCTGCTCCTTTGGATTTATCGCTCAGACGCTCGCCCATAGCAGCTTTATTGCAAAGACAACGTTTTAATTCTGCCTCCGCATTCCTTGACAATGAGCAACAACGTTTAGATATGGAATCCTTATTGGAAGCAGGCAAAGAAAATTTAGCCTTAGATGAAACAGGCAGTATAACACCCGAACAAATTGTATGTGCACCCTCTTTACCCAATAGTCCTTCTATGAGTCCGTCACCCCGTAGAAGAGCCATAAGTCCTAGAAGTTCTGGTGCGGGTAGTACTTCCTCTATGTCTCCACCAGCCACAATACCACCTAATGCTTTAAGTGCTGCCTCGAATCCcacaaatattttagataatttacAATTACGTTCCATGTTGCCAGCTGAACTATTGAATCCTTTGTTAGCTAAACAAAACATGgaattagctttaaaattatcAGCTGCTGCAGCCGCTGCTGTTAGCTCATCTACAGGAGGTGTTCCCCCAGCTGGTTCTACACCCGCCGATTTGGCAGCTGCAGTTGCGGCCGCAACCGGCAGAGGTTCTCTATTGGGTTTGCCTGTTTTACCACCAGCCGCAGCTCCCTCAGTACAAGTACCAACGGCTAATGCAAATCAACCACAAATCTATGTCAAACAAGGTGTTTCAAAATGTAAAGAATGTAATATTGTTTTCTGTAAATATGAAAACTATTTAGCTCATAAACAACATTACTGTTCGGCCAGAAATCAAGAATCCTCTGAGGGAGAAGCTAAAGTTTCTTCCACACCTCCTATGGCCACAGGAGCTTCACCAACTGAAACAACACCAGTAGCTTATCAACAGTTAATATGTGCAGCCTGTGGCATTAAATATACATCTTTGGATAATTTGAGAGCTCATCAAAACTACTATTGTCCTAAAGGTGGTGGTGTAGCAGCAGGAGCTGCTGCAGCTGTTGCTGCCAATCCTGATCCTTCACATacagttttaaaaaaagaaaaatgtcccAAATGTAAAACTTTGCACGAAGCCACACTACCTTGTCCACCACCACCGTCATTACAACAGCCCACACCCCCTCAAACATTAACCACAGCCAATCAactacaacagcagcaacaatcaTTATCTACCAGCACTTCTTCTACGAGTAGTAATCAAAATCTCTACAAATGTCCTCTATGTGATGCTGTAAGCCTAACAGCCAGCGAAAGTCGCAAACATATGGAAACCCATGGTACGGTTAAAGCTTTTAGATGTACTATTTGTCGCTATAAAGGCAATACTTTAAGGGGTATGCGCACTCATATACGTATGCATTTTGATAAGAAAACCTCAGATATAAATGAGGAACATTACATGGCCTGTATATTAGAGGATGAAAATCATaaaTTGCGTCATATGAAATTGGTTCATCCTCATATTGCTCCTAATTCACCGTCTATCTCTCCAGAGGTTGGTGATTTAGATACCATAGAAACGGCCTCATTAAGCAGCAGTCATAATGGTGACAATGGCATGAATaattttactATCAAGTCTGAACCTATGGATCATCATGCTTCAAATACAAGCCCTGCAATTCTTTTAAATCCTCATGACAATAACAATTCTCCTATACCACATACAGCACAAAATAACACAAATGATTTAATGCATCATATAAAATCTGAACCTATGGAAATATCAATTGAACCTTCAGCATTACATATACCACCACCTCCACCAACTTTACGATCACCTGCCATTGGTCCACCACCTCTATTAAATGCCACACCAGAAGAAAATATCAATCAAAAATATTGTCAAACTTGTGACATTTCTTTCAATTACATGAAAACTTATTTGGCccacaaacaattttattgtaagAATAAATTACGTCGTCCTGAAACTAATGATAGTCCAAGTCCTAATGCTGGTAACATAATAACAACTGCGCCATCACCCAACActttaataatgcaaaaaaataaagaaaatttgcaagaAGCTGCTATTTGA
Protein Sequence: MNGNDSKDFNTNNSTKIMDDHIDEDRRTPQNNHYQTKETDIVMTESQNIENIEMEYDNKNDDVDSQPPQHKRPKMELDESYRRNSTPVQSPKARTTENSNDSIKCDDFQNQIDESNSKDRRSTSPRTTTPALSPSKTEEVSNENICSPSSGSMPKLRLNALLASDPALMPDAKDLKVVHEETQTQQRIARLEQHLQQQLQTEDLPTNETEHLTSASAALVEPVKKPLPTPVEQPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETDEDGSLSAAIAEKTSASPSPANNPSASISLVPAEPATKVSKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIMEENSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTEGQLTPKLEVSTTSTTPKVPAVVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNINALNAASTAANNIATAAAAVTGQQINVVDSTRQTNTTETLLTEKNVKRNVDESTESTNKRKGEGFRESAPLDLSLRRSPIAALLQRQRFNSASAFLDNEQQRLDMESLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPATIPPNALSAASNPTNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTGGVPPAGSTPADLAAAVAAATGRGSLLGLPVLPPAAAPSVQVPTANANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQESSEGEAKVSSTPPMATGASPTETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGVAAGAAAAVAANPDPSHTVLKKEKCPKCKTLHEATLPCPPPPSLQQPTPPQTLTTANQLQQQQQSLSTSTSSTSSNQNLYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDENHKLRHMKLVHPHIAPNSPSISPEVGDLDTIETASLSSSHNGDNGMNNFTIKSEPMDHHASNTSPAILLNPHDNNNSPIPHTAQNNTNDLMHHIKSEPMEISIEPSALHIPPPPPTLRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPETNDSPSPNAGNIITTAPSPNTLIMQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: -
80% Identity: -