Preg013921.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01178397.1:1791-4768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6 3.8e+02 2.8 0.0 2 23 215 236 214 236 0.94 2 12 3.8 4e+02 2.8 9.1 1 23 242 265 242 265 0.91 3 12 1.4 1.5e+02 4.1 0.2 1 13 279 291 279 302 0.76 4 12 0.067 7 8.3 0.5 1 21 349 369 349 370 0.96 5 12 1.3 1.3e+02 4.3 2.0 2 23 406 426 405 426 0.94 6 12 0.0039 0.41 12.2 4.1 1 23 442 464 442 465 0.93 7 12 0.00029 0.031 15.7 0.5 1 23 473 496 473 496 0.96 8 12 5e-05 0.0053 18.1 0.3 3 23 503 523 502 523 0.97 9 12 1e-05 0.0011 20.3 2.1 2 23 529 550 528 550 0.97 10 12 0.0015 0.16 13.5 2.2 1 23 556 578 556 578 0.98 11 12 0.0013 0.13 13.7 3.0 1 23 583 605 583 605 0.95 12 12 0.21 22 6.8 4.0 1 23 610 634 610 635 0.96
Sequence Information
- Coding Sequence
- atgaaGCAACGATGTCGTTGTTGTTTAACAACAAATTCCAATATCTATTTCAATATATTCGATCACCACAAATCCGGGACCACATATGCTGAGAACATACGCTATTTAGCTGAAGTAGAAATTGAGCACGACGATGGTTTACCACAACAAATATGTTCCAATTGTTATAATGAAGTGCAGCGTATTTACAACTTTGGTATGAATGTGCGACTAGCCGATGAAAAGTTAAGACAAGAATTGGAAGCTGCCAAAAACCAAATAGAAAATGAAGAGCAATTGGAAAATGTGCAAGTATTAGATAATGAATATTTTGCTCCAGTAGATGATAATGATGGTATGCAAGTGTGTGTTGTGGAGGAAATACTGGACCAGGAAAATGAACAAGAAAATGTGTTAATAGTAGAGgaaattaatgaAGTGGAAGAAATCCAAATGGTAGAAGAAATTTTAGATCCAGAAAAcccaaaagaaaatttgttagttAGTTTGGCTCAAGTGGCAGCAACTCAGGAAAATGTTAATGTTTCAAACCGAAACGAAATCTTAAACGAATATTCCTATTTGCCGGAAGATGAAAATGACGAAGATTACTTAATAGAATTTGATGCAAATGAAAGTAATAATTTCAAACCCTCTAAGTGGAAATGTGTTGAATGTAAGATGATATTGCGCGGAGATGTTTCCTATGAAGGTCACATGAATATTCACAAACAATGTAGACCTCATACCTGCCACCAATGCCAAACTAAGTACAGATGTCGCTCAGCATTAAAGAGACACAAAGACCTTAAACATGAGCCCATAATGAAAAATACAGACAACGTAAAAATCTTATATCTATGCATGgattgtaataaaaacttttattcagAACTTATATTTTATCTACATCAAATTATCGTCCATGACCAAGGTGATAAATGTCCTTTTCAATCATGcgatcatataaaaaatttaaaagaacataTAGTAAATGGACAcgataaagatataaaattaaatcgacAAACATTAAGTATTAATGAATCGACGGAAAATATGTTATACCAATGCTTTAGTTGTTCATCAACATTTGAAGAGTTTAGTCTATTGCAAGCACATATTAAACAATGTTTTGCCGACGTTGGAGATCAAGGGTCACAacctgaaaataatattgtggaGAGTAGCaatgttattgaaattattgaaGTTGACGGAGTAGATATTTCGGTGCAATGTAGTGTTTGTGCAAGAAAACTACTTAAGAAAAATCTACATAAACATATGGAACTTCATAAGCGGAAGAAAGATGACAATAAAGATGCTGAGGagagcaaaaaatatttgtgtgccTTTTGTCCacgtgaatttaaaaattccaaatcatTACATCAACACGAAAAAGTTCACCATGGTGAAAACTCAGATATAGTGTATGTTTGTACGGAATGTGACCGCCAGTATGCTTCCCAGTATTTGCTAGATACTCATCGTAAACAAGCACACAAAGAACGCGACAATATCTGTAATATATGTGGTAATGCTTTTAAGTTAAGAAGTCAACTAGTGAATCATATGAAATTACATTTGGAGAAGAATATACCCTGCCCGCATTGTGATAAAAAATATGCCAGacattttgatttaaatgtaCATTTAAGATCTCATACAGGCGAACAGCCATATGCTTGTCATTTGTGCGATAAACGTTTTGCCATCAAAGTGCGTCTTACATATCATTTGCAAAAACACTATGGCATCAAACATACCTGTAAGGAGTGTGGTGCTGAGTTCAATTcgaaacaaaaactaaaagctCATTCATTTAAACATACGGGAATGCCCTATCGTTGTGAGTTGTGTGATGATCATGGTTTTGCTACACGAAATACatttaaacgTCATTTAACTCGTGTTCACCATGCTACTATATCTGAAGAAGCACTTAACgatatgtttcaaaaaaatactgGTAAAAGTGTTAGTATTAAACAGATCGATGATCAATGCCTTGTTATGACTGCAAGTGAAGATGACATTCAAGAAGAAATAGAAGTATTGGGAAAATAA
- Protein Sequence
- MKQRCRCCLTTNSNIYFNIFDHHKSGTTYAENIRYLAEVEIEHDDGLPQQICSNCYNEVQRIYNFGMNVRLADEKLRQELEAAKNQIENEEQLENVQVLDNEYFAPVDDNDGMQVCVVEEILDQENEQENVLIVEEINEVEEIQMVEEILDPENPKENLLVSLAQVAATQENVNVSNRNEILNEYSYLPEDENDEDYLIEFDANESNNFKPSKWKCVECKMILRGDVSYEGHMNIHKQCRPHTCHQCQTKYRCRSALKRHKDLKHEPIMKNTDNVKILYLCMDCNKNFYSELIFYLHQIIVHDQGDKCPFQSCDHIKNLKEHIVNGHDKDIKLNRQTLSINESTENMLYQCFSCSSTFEEFSLLQAHIKQCFADVGDQGSQPENNIVESSNVIEIIEVDGVDISVQCSVCARKLLKKNLHKHMELHKRKKDDNKDAEESKKYLCAFCPREFKNSKSLHQHEKVHHGENSDIVYVCTECDRQYASQYLLDTHRKQAHKERDNICNICGNAFKLRSQLVNHMKLHLEKNIPCPHCDKKYARHFDLNVHLRSHTGEQPYACHLCDKRFAIKVRLTYHLQKHYGIKHTCKECGAEFNSKQKLKAHSFKHTGMPYRCELCDDHGFATRNTFKRHLTRVHHATISEEALNDMFQKNTGKSVSIKQIDDQCLVMTASEDDIQEEIEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259645;
- 90% Identity
- -
- 80% Identity
- -