Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01166456.1:17005-20035[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.096 10 7.8 3.7 1 23 48 70 48 70 0.96

2 7 3.9e-05 0.0041 18.5 1.5 2 23 424 445 424 445 0.97

3 7 0.00047 0.049 15.1 3.6 1 23 457 480 457 480 0.97

4 7 9.9e-05 0.01 17.2 0.3 1 23 485 508 485 508 0.95

5 7 0.00036 0.038 15.5 1.9 1 23 513 535 513 535 0.97

6 7 7.9e-05 0.0083 17.5 1.9 1 23 541 563 541 563 0.98

7 7 0.00011 0.011 17.1 1.3 2 23 597 619 596 619 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.096	10	7.8	3.7	1	23	48	70	48	70	0.96
2	7	3.9e-05	0.0041	18.5	1.5	2	23	424	445	424	445	0.97
3	7	0.00047	0.049	15.1	3.6	1	23	457	480	457	480	0.97
4	7	9.9e-05	0.01	17.2	0.3	1	23	485	508	485	508	0.95
5	7	0.00036	0.038	15.5	1.9	1	23	513	535	513	535	0.97
6	7	7.9e-05	0.0083	17.5	1.9	1	23	541	563	541	563	0.98
7	7	0.00011	0.011	17.1	1.3	2	23	597	619	596	619	0.95

Sequence Information

Coding Sequence: ATGGACAATATTAAACTAGAAGACATAGAACACACCTCAAATGGTGATCATATATATGCTGATAAGCAAACTTGCCTGCTGGAAGATAGCGACAGCCAATGTGGTCATGTCTTCTATAATGAAATCACACGTTTGCTAAAATTCTATTGTACCTATTGTCGGGAAACTTAtgataatattgaatatttttgtcaaCATTTAAGTGAACATATAAATGAAGTTGAACCTCcaacatataaaaatgaagAAGAGGATGCTCAAGACCAGGTGGAATATGTTGACCAAGACGAGAATAGTAATGAATTGGtggaaaaatcattaatattaagCACTGAAAATGAACAATTAGCTACATCCTCCTATCCAGCCACACAAGACGATGATGAAAGTACTATAGATGCTTTTGAGTATGAAGATGATGAATTGGctcaaaatagtaaaaataatgaatataaacGCGATATGCAGGCCATGGATcatgatttaaataattgtgaaatGATTATAGAAGAAATTGAAGATGCTGAGGAAATACGAGCTGAAGTGGAACAAGAAATGTTAGAATCTCTGGCAGAGGAagataatagtttatttttggagGATAACACTTCTCCGGCAGAAATTGTTGATTATGAGGAAAATGCCAATTTGGAAGTTTTGCAAAATAGCATATCAACAGttgataatataaaaagtgGTAACAGCTTTGAGGAGTGTTTTATAAAGGAGACTAATATCGATAAGATACGTTCCGTGGGCGTGTGTGTattgaaagagaaaaattttaaagacggTAGTAAGCCAGTAGCGAAAAGAAAGTCATATCTCCAAGATTTATCACGCCTCAAGCGTCGACGCAAAAAGGTAACCACCGTTAAAGTTATAGCTGTTAAAAATCGTATAGCTGAACTATACGAACGTATACAAAATGAACAACAAAAATCCCAACAAATATTTTCcaacgaatttttaaatactatacAACAGGAACAAGAAACTCAAGATGCCATCGAAAGTTTAATTAACGAAGACGAGAATCAAAATAGTAAAACTATTAATGAAACCAAACCCGAAGTTACACGCAAAATTATTGGAGAAACTCTAATAACACTAATACCCGAGGGTACACAAATACCTAGTAAATTACCTTCGCCTGTTAATAAATCATCACTGAAtactgttattaaaaataatatacttacaCGTACGACGAAAACCTCTTCCATTTACAATTTTCCTAAATCCGAagatacaaaagaaaaactGGCAGTTTGTCCTGCCTGTGGTAAAACATTTCGCAGTCATTTTAGTTTGACTATACATAAACGTATACACTATCTGGAATCGGATAGTAGTGTTAAGCTGGCGCATAAATGTTCAGATTGTGATCAACTTTTCAATAAACTCAGCCAGCTGAAACATCATGTGGAAACAGTACACTATCCAGAtggttttatttgtaaaatatgtaaTCGCCAATTAAGTAGCCTTTCTCTGTTAGAAAGACATATGGTTAAGGTACATTTGGATAGGCCATTTAATTGTAAAcattgtaataaaaacttttcggATCCCCTTACCTATGAAGAACATTTGGCTTCCCATAATTCCGGTGAAGTGTTTAAGTGTACGACTTGTGGTCGTAAATACGCAACGGAATTCTTTTTGATGGAACATATGCGTAACCATAAGGAGCAAGTGCCTCAAACGTGTGTCGTATGTGGCAAAGTAACACTACGCATTACCCAGCATATGAAAATTCATACACCCCGTCCAAAGCGCTTACTTAGCTGTTCGGTGTGTGgcaaagtatttaattttagctCTGGTCTTAgtcatcattttaaaattatgcataaacTACCTAGACCACCACCAAAACCTAAAAGGGAATCACAAGCCAACACAATTAAACGTAAGCGAAGAACTCGTCCTAATGAACGTACagcaaacaagaaaaaaacattaagccTTTCCAATACTACAGATACAGATTTTATTCTTGAAAGTGAAAAATTTCCCGATCAAATTATAGAAGAACAAATTGAAATTCCCCATGAAGTTTATGATGATTCAACAAATGCTGCATCATTGTTGAATTTAGAAACCGAACAGAAAAATGTTGCAGAAGAAGGAAATCTTCATAGGTCTAGTCAAACGCAAATGTCTGGGGAGTGTGAAAGACTGTTACAACAAGATGTTATAAATCATAAAGAGGAAGAAGCTAAGCGAGTTATTGtagaattaatacaaaattcttcGTATACTTCGTTCTTTCCCGATAATTTGTCTAGTGTTTTAGAAGTAACACCGCCTATAGCAAGAGAGGAAACTATTTCGGCAGTAAATAGTATAGTACATGACTGTTAA
Protein Sequence: MDNIKLEDIEHTSNGDHIYADKQTCLLEDSDSQCGHVFYNEITRLLKFYCTYCRETYDNIEYFCQHLSEHINEVEPPTYKNEEEDAQDQVEYVDQDENSNELVEKSLILSTENEQLATSSYPATQDDDESTIDAFEYEDDELAQNSKNNEYKRDMQAMDHDLNNCEMIIEEIEDAEEIRAEVEQEMLESLAEEDNSLFLEDNTSPAEIVDYEENANLEVLQNSISTVDNIKSGNSFEECFIKETNIDKIRSVGVCVLKEKNFKDGSKPVAKRKSYLQDLSRLKRRRKKVTTVKVIAVKNRIAELYERIQNEQQKSQQIFSNEFLNTIQQEQETQDAIESLINEDENQNSKTINETKPEVTRKIIGETLITLIPEGTQIPSKLPSPVNKSSLNTVIKNNILTRTTKTSSIYNFPKSEDTKEKLAVCPACGKTFRSHFSLTIHKRIHYLESDSSVKLAHKCSDCDQLFNKLSQLKHHVETVHYPDGFICKICNRQLSSLSLLERHMVKVHLDRPFNCKHCNKNFSDPLTYEEHLASHNSGEVFKCTTCGRKYATEFFLMEHMRNHKEQVPQTCVVCGKVTLRITQHMKIHTPRPKRLLSCSVCGKVFNFSSGLSHHFKIMHKLPRPPPKPKRESQANTIKRKRRTRPNERTANKKKTLSLSNTTDTDFILESEKFPDQIIEEQIEIPHEVYDDSTNAASLLNLETEQKNVAEEGNLHRSSQTQMSGECERLLQQDVINHKEEEAKRVIVELIQNSSYTSFFPDNLSSVLEVTPPIAREETISAVNSIVHDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261416; iTF_01259582;
90% Identity: iTF_01261416;
80% Identity: -