Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01166405.1:40658-44209[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0092 0.97 11.0 6.5 1 23 259 282 259 282 0.95

2 14 0.002 0.21 13.1 3.0 1 23 288 311 288 311 0.97

3 14 0.013 1.3 10.6 0.6 2 23 342 363 341 363 0.95

4 14 0.012 1.2 10.7 1.0 1 23 440 463 440 463 0.96

5 14 0.00074 0.078 14.5 0.8 2 23 471 492 470 492 0.97

6 14 4.1 4.3e+02 2.7 0.5 1 21 500 520 500 521 0.90

7 14 0.34 35 6.1 1.1 2 20 575 593 574 596 0.93

8 14 8.9e-05 0.0093 17.4 1.4 1 23 674 697 674 697 0.96

9 14 0.0007 0.074 14.5 1.4 1 22 704 725 704 725 0.95

10 14 0.21 22 6.7 1.2 2 23 737 759 736 759 0.96

11 14 0.0069 0.72 11.4 3.6 1 23 803 825 803 825 0.97

12 14 0.0019 0.2 13.2 0.5 2 19 852 869 851 871 0.95

13 14 0.0013 0.14 13.7 5.5 1 23 923 946 923 946 0.97

14 14 0.12 13 7.5 5.0 1 23 983 1006 983 1006 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0092	0.97	11.0	6.5	1	23	259	282	259	282	0.95
2	14	0.002	0.21	13.1	3.0	1	23	288	311	288	311	0.97
3	14	0.013	1.3	10.6	0.6	2	23	342	363	341	363	0.95
4	14	0.012	1.2	10.7	1.0	1	23	440	463	440	463	0.96
5	14	0.00074	0.078	14.5	0.8	2	23	471	492	470	492	0.97
6	14	4.1	4.3e+02	2.7	0.5	1	21	500	520	500	521	0.90
7	14	0.34	35	6.1	1.1	2	20	575	593	574	596	0.93
8	14	8.9e-05	0.0093	17.4	1.4	1	23	674	697	674	697	0.96
9	14	0.0007	0.074	14.5	1.4	1	22	704	725	704	725	0.95
10	14	0.21	22	6.7	1.2	2	23	737	759	736	759	0.96
11	14	0.0069	0.72	11.4	3.6	1	23	803	825	803	825	0.97
12	14	0.0019	0.2	13.2	0.5	2	19	852	869	851	871	0.95
13	14	0.0013	0.14	13.7	5.5	1	23	923	946	923	946	0.97
14	14	0.12	13	7.5	5.0	1	23	983	1006	983	1006	0.96

Sequence Information

Coding Sequence: ATGGAGAGTCACAATAAAAATGaatgttttataaatggaaTGCTTTATAGGTGTCGTACCTGTTTTAATCCAGGATGTGCAGTATATCCCCTTAAAGATGAGTGCAGTGATAAAAAAACTTGGCgtgatttattaaaagaagttGCTCAACTAGAGACATATGAGGATGAGAATCTTCCAAATACTGTATGCTCAAAGTGTTTGGATAAACTTAtagtattttatgattttatacttCAAATTAAAAGTGTAAATACAAAATACTTGGAATTATTATCAAGTTCTAATAACCCGCTAGATAATGTTGCGACATACCAAAAAATTGATTCATCCAGTGATAGCTTCGAAGAATTTCCTATTGATATGCCCATGGAAGAGTTTATATCAGAAATTAAGattgaaaaagaagaaatcGCAACATATgatcttattttaaataacaacgaAAATGATGATTGTGCTACATTTATGAATACTTTGGTCGAGAATACCAATTTATCTTCAATAAgAACTGTAGATGATGAATCCAAACAAAGTTCAAGCGGTAACACAAATAATTCGAGGTACTCATTTTCTGAAGATGAAGATGATAATGTGCCTTTAAAAGTGTTCAAGATAGAGAAAAAGAAATCCAGTACACAATCAACAAGCGTATATAATAATCCTTCTATACCTGTGAAGGGTATGAAAACAACACGTCATGTCCGTAACATAGAGAACGAAAGAAAACTACTATTCCCATCAGGTTATAAATTCGAACAAGTGAATAGTCGTTTTGTATGTCCAATttgtaaacaaacattttcttttcaaagaaattgtCGTCGACATATGCATTTAAAACACATAAACCAAACCAAATTTCACTGCGGATTTTGTGGACTACTCTTTAGAAGTAGAGACTATTTATATCGACACCTTAAACGTGTACATCCAAGCGAAACAGTTGATACGAACACTAAGTATATAGAAAGATTGTTTGGAAATCGTTTATACAGTAAACCCAGAGCTTGGAGCCATGTAGAATGTAAATTATGTTCAACCACATTTACAACAACTAAAGAACTTCGGCCGCACTTAGAAAGTCACAGTGATTTAAAGACTCTTAATAACTTAGTATTGGACGATCAAATTGTCCAGCATTTGTTCccaaatattaatgatttaaacattGTAAAGCAAAGTATAGTCAAAGATATTTCCGAtaagaattatttcaaatattattcagTTCTAAATGAATATCGTTATGAAATGTCAATTAGTGATACGGAAGTAGAGGATTTAATAGAAGAAACTACAGAATGTGCTGTCAAATACAAATGTGAAGTATGCGCTGAAGAATTTTCCTTCAAATACCAAGTTTTTTTACACTTGAAAGAAAAGcattctaaacataaaattgcTTTGAAATGTGGTATCTGTAAGTTAGaatttatttcaagaaaaatgtaCGAAAAACACTTACAAACGCACTgctataataatcataaaatttttcgttgTAAACGTTGCCCGGGTAGGTTTATGTGGTCGGAAAATATGGAAAATCACATTTGTGCTCTAAATACCCTACATATTCCAGAGATAGAAGCCCAAGTTGATATTTCAGAGCCTACAGTGAATGTTACACAAGTTAAGGTTATTCCTAAAAATATGATGCGGTCTAAATCTCAAAATTATGACGTAACCGTTAAAACCTTCTCAGACAAAGCTATAATACGCTGTGCTCTCTGTGCACATTCGTTTGAAAAGCTAAGTCTATTGCACCAGCATATGCCGTTGCATGCTGATGGCAAAACCGGCATTGATTTCAACGATTGCCTTTACGTAAAAACCTTTAAACGATCGAAATCATTTGATAAAGCACATTTGCAAAAACAGATTCAAAAAGCGTATAATAAGGCGCAAATTAGTCTTTTTTATCAAGCCATCGATAGGCAGGGCAATGAACTGCATATTTCAGATTCGGATAGTTCCATAGATGAAAGTGATAGTggcgaaaatgtcaaaaatcaATACACGTGTGACGtttgcaaagaaatttttaaacaacgAAAACTTTTACTTAAACACCAACAAGAACGCCATAATAATGAGGAACTACCCTTCTCGTGTAAGAACTGCAATAAACAATATGTCAATTCTCAATTGttacaacaacatttaaaaagaatatgcTGGAATGAAAACCGCCGAAAAGCTAAACAATGCCAATATTGTAAGGATCGTTTTGTATGGGAATATAGTTTATcaaaacatatgaaaatacagCATCCCATGTTCACGCGACCATCCAATAACGCTCCTACGACTTCTGAACTCTTGATTTCGAAGAATGATGATTTCTTGCCCGATAATAAACTCTCGGTAACTTCAGATTTATTAATAGAACCTTCCTTTCTTTATTATTGTCTTATGTGCCCAAAAAAATTCTTCACCATTGAACATCTAAACGATCATTTAATACATCATCGATTGACTCCAATCGAAATGAAGGCCGTTGAAAGCATAGTTCATTCCACATGGTGGCCAAAtggtgaaaaaataattaagtgtaaaatttgcGATTTAACCTTTAAAACTATGGCCAAATTGAAGCAACATTTTTCACCTACAAATCTTCAAAATGTTTGCGCCGATCAACATTCTCTAGTAAACTATTCAATTACTAATCAAAAAGGATTCGAATTGCATTTAGAATTGGATTCTGAAACAGAGACAGAAAATGAACATAATGGAACCGACACAAATAACCTATTCCCTTACAATTGTTGCAAGTGCAACATGTCGTTTAAACGAAAATATGAAGTTTCTCAGCATCAACGTTCTATGCACAATTATGAATTACTTGAGCTAAAATGTGAACGTTGTATTTTCCGCACAGTCTCCcagaaaattttatattaccaTAAAGCCACACAgtgttttaatattgaaaaagaaCACCAATGCCATtactgtaattttaaatttatgtggaAAGAAAATCTAGGCAAGCATATTCTTTCCTTTCATACTCCAAATGAATTAACCACTACGAAAAATGCTGTTAACACTGCAGTTTCTAATAAAACTATAACAACCTGCGATGCTGATATTGTCAAACAGTCATCGTAA
Protein Sequence: MESHNKNECFINGMLYRCRTCFNPGCAVYPLKDECSDKKTWRDLLKEVAQLETYEDENLPNTVCSKCLDKLIVFYDFILQIKSVNTKYLELLSSSNNPLDNVATYQKIDSSSDSFEEFPIDMPMEEFISEIKIEKEEIATYDLILNNNENDDCATFMNTLVENTNLSSIRTVDDESKQSSSGNTNNSRYSFSEDEDDNVPLKVFKIEKKKSSTQSTSVYNNPSIPVKGMKTTRHVRNIENERKLLFPSGYKFEQVNSRFVCPICKQTFSFQRNCRRHMHLKHINQTKFHCGFCGLLFRSRDYLYRHLKRVHPSETVDTNTKYIERLFGNRLYSKPRAWSHVECKLCSTTFTTTKELRPHLESHSDLKTLNNLVLDDQIVQHLFPNINDLNIVKQSIVKDISDKNYFKYYSVLNEYRYEMSISDTEVEDLIEETTECAVKYKCEVCAEEFSFKYQVFLHLKEKHSKHKIALKCGICKLEFISRKMYEKHLQTHCYNNHKIFRCKRCPGRFMWSENMENHICALNTLHIPEIEAQVDISEPTVNVTQVKVIPKNMMRSKSQNYDVTVKTFSDKAIIRCALCAHSFEKLSLLHQHMPLHADGKTGIDFNDCLYVKTFKRSKSFDKAHLQKQIQKAYNKAQISLFYQAIDRQGNELHISDSDSSIDESDSGENVKNQYTCDVCKEIFKQRKLLLKHQQERHNNEELPFSCKNCNKQYVNSQLLQQHLKRICWNENRRKAKQCQYCKDRFVWEYSLSKHMKIQHPMFTRPSNNAPTTSELLISKNDDFLPDNKLSVTSDLLIEPSFLYYCLMCPKKFFTIEHLNDHLIHHRLTPIEMKAVESIVHSTWWPNGEKIIKCKICDLTFKTMAKLKQHFSPTNLQNVCADQHSLVNYSITNQKGFELHLELDSETETENEHNGTDTNNLFPYNCCKCNMSFKRKYEVSQHQRSMHNYELLELKCERCIFRTVSQKILYYHKATQCFNIEKEHQCHYCNFKFMWKENLGKHILSFHTPNELTTTKNAVNTAVSNKTITTCDADIVKQSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261387;
90% Identity: -
80% Identity: -