Preg022713.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phormia regina
Gene Symbol
-
Assembly
GCA_001735585.1
Location
MINJ01014779.1:1610-10005[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.017 1.7 10.2 0.1 1 21 1794 1814 1794 1818 0.91
2 8 3.7 3.9e+02 2.8 2.1 5 23 2234 2253 2233 2253 0.95
3 8 8.9e-06 0.00094 20.5 3.6 3 23 2281 2301 2280 2301 0.98
4 8 0.00089 0.094 14.2 1.0 1 23 2307 2329 2307 2329 0.99
5 8 8.3e-06 0.00088 20.6 0.5 1 23 2335 2357 2335 2357 0.99
6 8 0.027 2.8 9.6 1.4 1 23 2363 2385 2363 2385 0.95
7 8 0.00068 0.072 14.6 0.0 2 23 2392 2413 2391 2413 0.96
8 8 0.0019 0.2 13.2 1.6 1 23 2419 2442 2419 2442 0.97

Sequence Information

Coding Sequence
atgaataaaatattaaatcatgataattataataataataatgatgatggagaaaataatattttggaagcTGGAGAAAAAACACTTTTACGCGATCATTTAAAATGTGGTGAAGTATATACTTGGCGATGTGCTGGTGAATTATATGCTATAGAATGTAAATTATGTGATGATCATCCTTTGTGTCCTTTATCAGAATTTCCACAACATATGGAAATATGGCATACAGAATGGCAAGAACAATCATCTGAGAGCGAACAACAACAggaagatttattttatacagaTAATGATGAGGACGATGAAGAACATAATGTTGACTATACTTTAGCCTTTACCACCCAAGACAGCGGCTTATTTGAAACCAGCGATCGGTTACAAAACGTCAGAATGTCAAATGATGATGTGCTGCCTAATGACTCAACTTTAGAACCTTTTGAACAGGTACTAATAGAACAAGACAATACAATAGACTCTACACAACTTAAAGAAGATGTGAACAAAACAGAGACAAGATTAAAAGATGTAAATAAACAGGTAGCTGAAGAGGCAACAACCGCAAAAGGTGTAAAAGTCAGCGAGCAGTTAGaaattaatgtaaacaaaaatctaacattagaaaaacataaacaaagaataaactctctggaaataacagaaaatgagagagaATCCAGTGAATTACAAACAATAACAGAGAgtgaaaatgattttaatgcaaatgaaaatgaaacaaaaagaaaacaattttttaaaaataattttcgaaaaattgtcaagaaaactaaaaattctagaaaaaatttagagaaattaaaaggaattaaagaaattgaaacaGAAACAAGTGACAATGATGTTAGAGAAAGTGAAGAATCTGaaacttatgaaaatttaataaaatctaataaaataacaaaaacaataaaatataatttaaagaaaatcaaaaatattaaaagaaatttaaaggaaattttgaaaaattccacaaaatttcaaaaaataacagaaactGAAACAAGTGAAACAAGTGAAAATGAATTGAGTGAGAGAGAGGAATTATTAACAAaaggaaaattacaaaaaagtattaaaactaatttaaggaaatttaaagaaattaaagccAATAAAAGAAATTGCCGAGGACATGTAAAAGACTTTAGTGATTTGGAAGAAGATTTTGAAGAAACAGAAAGTGAAACAAGTGAAAATGAAAGTGattttaaagataaagaaaaaattaagtcaaatagtagaaaaattaataaaaatgctttaagttctaaagatttcaaaagaaaaattgtaaaagatattaaaaattttacaactaaaaaagaaacaaatgaaattgaaacCCCAACAAGTGATGAAGAAGGAGATTttagtgaattaaaaaatgaaacaagtGAAACGGAAGAAGAAATAactaataatagaaataattttaaatttattaaaaatagacctaaaaataaaattatctgcgaaaataatttacaaaacaaaacagaaaaaagaaaatccaaaagaagtttaaaaggaaaaacaaaagaaaatattagaaaaattaataaaaataaaattgaaagaaaaattaaagaaattgaaacaGAAATAAGGGAAAATGAAACAGATGAAACTGAAATTAGTGAAACCGAAAGTGAGATTATAGAGATTAAAagaaaacgaaatgaaaatgaaacaagaaaaataaataaaaatataatacaagaatATGAAACAGAAATAAGTGAAAATGAAACAGAAACAAAGCAAATTGGTGCCAACAAAACTGATAACACAAAAGAATATGAAACCAAGAAAATAATTAAGAGCAAAagacaagaaaataaattagaaatgagTGGTAATGAAACAAGTGAATACGAAATAACAGAAAATGAAAGGGAATTAACAGAAATAGTAACAGATAATATTAATGAAGTAATAATACAAGAAAATGAGAGTGGAACTAgtgaaaatgaaacaaatgataaagaaataatacaaaatgaaagtttaaatgcagaaaaaataaacaataacaaattagaaataagagaaaatgaaacaaataatagaaatggaaataaaaacaaaagaaacTTCAAAAAACCCTGCCAAGAAAACACAACAATTCAACAAACTAGAAAATCtccaagaaatttaaaagaaaatttaaaactaaaaacaaaaacaaaaaccctTGAAAATGAAACAGAATTGAAGGAAAATgagactaaattaaaattaaatggaaataaaacaacatcaaaagaaaatgaaatagaattaacagaaaaacaaaatgacaatgaatttgttttaataaaaaaacttgaaaatgtaATGGAATTAAAAGGCaatgaaatagaattaaatggAAATGAAACAGAATTAAATGGAAATGAAACAGAATTAAAAGAAACACCAAATGATAATGAGTTCGTTGTAATAAATAaggaaacaattaaattaaatcaattggaATTAATAGAACATGAAACTGTGATAGGAATTGAAACAGAAATACTTAAAGATAAAGAAGGAACTTTgggaaatgaaacaaaatatgaaatggaAAAGAGAGCAATTAGAAAATTGAATAATTcttctcaaaaatataaaactaataaacgAAATCATACAAATCCCAGAAAATGTCAAAGAAATCTAAAAGaccatttaaaagaaattgaagaaaTACTTGAAAATGAAACAGTGAgtgaaaatgaaacaaaattagaGGAAAATGAAACAGTATATGGAATTGAaactgatttaaatgaaattgaaatatttaaaaataaaaagaaatttaaagagaatgaaagaaaaacaatagaaaataaaaaagaaaacaaaacactaAACAGTGAAATTGAAACAGaactaaataaaagtaaattacatgagaataaagaacaaaatgaaACGAAACTAAATGGCAATGAAACAAAAACcagtgaattaataaaaaataacaaaatctacAACAAATTCTCTAAGTCCCCGAAATATTTAGGGGGAACACGtaaatctttaagaaatttaaagaaaaataaaataaatttaccagATTTACAGGAAATGGATGAAAAGAAAATGGAATATAATAGCAATGGAAcctttgaatttaataattttgaggaactaaaaaataataaagcaaatagcagaaaattaaacaaaaatcaattggAATTGAGAGAAAGGGAATCCCTGGAAATGGAACAGaaagatttaaatgaaaatgaaaccaACAACTCAATATTTAGCAGAATTAAGGAATTTAAAAGTCATGAATCTGTTAAGAGTAAAGCAACTAAAAGGAGCTTAAAAGAAGGTCCTATAGAATTTGAAGAAGAGAATCTAAATGGCTATGAAACAGAACCGGATGAAGAAGATGATTTATATAATGATAAAGGATTAGAAATCTTAGCAAAACCTTTGTATAGTTCAACTCCAAAATGGCCCAAAagaataaggaaaaaaatagccaagaaaaatttaaaagaaattgaaaaagaaacaaatgaaaGGGAAATTGCACaagaaatttccataaaaacttCACAAACTAAGGAGCAGCATACTTTTCAAGATCctcaaaagcttttaaagagAACAAGAAGTATTAGTTCTCCAGAAATGCCAGAAAATATGGAAGAGAATCCAATACAAAGTCTTGAAGCAAATTTGAACTCTTCCATAGATTCTCCAACAGCCAACAAAAGAACCAAGAGAGAAAGCTCTTTAGAATCTTCAGATATTTTAGAAGACTACTCCATAAATACAAATTCTTTTAATGATCTCCTAACTGCCACCAAATCCACAAAGAGTGAAATTTCTCACGAATTACCAGAAATTATTGAAGAAATCTCTATAGAAACTTTAACTTCAAATATAAAACCTTGTGAAGATCTTTTAAAATCTCCCAAGAGAATAAGGAGAGGAAGTTATGCAGAGATCAACTCAACACCAAATACTTTAACAGATTTTCCTCAAACCCTTTCTGAAACTCCGGaatgttctttaataaattctgaaataaaaatgaaactacaaGAAGACCccaatgaaatttctttaacacCAAATATTGAGGCTAATAAAAGATCACAACGAAATTCAAAATCTTATCAGGAATCTCtagaactaaatataaattccgagggaaatttaaatcaacaacAAGATTCTCTAATAGATGAACTTTACTCTAGTAATTTAGAGTTTGAAAACAGCAACCAAATACTTGCAAACACGGAGACTGAGTctaaaaactcaaaatcaaataaaggaaaaactttacaaaataaagaGCAAAGAAAATCTATAGAAACAGACAAAAGTCTGAACTTAAATAAACCACTAGATGCTAGAAATTCCTTATTAAATCCCAGCAGCTTTAAAGAGGTAtccaataaaattacaaaacaaacttTGGTTACCCaatattttgcaaacaaaaatctCAAAGATGCTTCACAAAACAGTTCCAATAAAGATCAAACTTCAGTTAATACTGAAAATAGTTGCTGCACCTTGGAAGAAACcactaataatattttgtttaattcttacgAGACCTCAAATCCTTCGACACCCTCTAAtctaattttacaaaacaattccCCCCACAAGGATAACTCAACACCAACAACCCTTAGATCTTTATCTCCTCTCTCACCCAAAACCGAAGAGGAACATTTTGAATTCTATGAACCCAAAGAgaaacttaacaaaaatcatattagCCATTTAATAAAACTCTACCGTGAACATCCCCGTCTGTGGGATCAATCGCATCCGGATTTCTGTGAACCTCAGGTATGTCGCAAATCATGGCAACAAATCACCGATCAATGGAATGAATTTTGTAAACGTAATTTCACCACAGCCGAGGTACGCATACGTATTAGTACTCTCTGTCAACGTTATCTACAGGAAAGAGAACGTTTAGCTTTAGAGGGAGAGCTAGATGAGGCTGCCAAATTTCCCTATTACgaacaaatgcaatttttggaACAACAAAAATCTTTGCAAAAACGACGTGATCTGTATGAACAACAAAATGAGAAATTATTGGAAATCTATCAACATTTTCCCATACTCTGGCATGTTAGCTGTTATAAATTGCGACAAGCCAAGGAGAGAGCTCAAGCTTTTGAGAACATAagtaaagctttaaaattatattccataCACTTATCGCCCATGGCTGTACAGAAACGTATACGTTCTTTGAGAAAATGTTATCGTTTAGAGAAAATACGCTTTTTACATGCTCAAGTTGAACAAACGCCATTTGAGACAGAATTTCGTCATTATGAGAGAATGCAATTTTTAGATAAACATATAGATCCATTTGCTTGTCGTATTTGTggtaaaatctttgaaaatctGGTAGGTTTTCGTGAGCATTTAGAGGCTGAAAATCATGGTAATGTACTGCAAGAAGATAGTGAAAGTGAGAGTGAAAATGAAGAAGAGAGAGAGGAAATAAACTCAACAAATGAAATTGCTAATaatcatatacaaaatataGCTGAAAATAATAACATGTTCGTATGTAATTCGCCCCTAATAATGGAAATAGAAAATCCTGATGATATTTTACAAACCTTTACTCCTCTACCCTCAACACCAATACCTGAACTGGATGCTATCTCTAATTTAAATCTATCAAGTTCTGAAACAAATCTAAATCGAGAAATTTTAGATAATGATTTGCCCATCATACAAgaagttttaatatttcctcCAAATACACCTCTTGAACCTTTAAGAAATGTTGAGCATATTGAGGAAGATCAGCTAATAGAAGAGATAATGGAAACAGTAACCAGCAATGATAGTTTTACCAATCAATCATTGGATCAGTTTATAAACTCAGCCACTAATTGTGAGgaaattacaacaaataattGCCTTAACAATTTCCACTCTtcttttagtaatatttgtCATGATCAGCAAGTAAACAAaaccttagaaattgaaaatcCATCACTCCAACAAGAATCTAAACCCAACTCTTTGGAAAATCCCCTGGTAGTTAAAGTTCAATGTGCCGATTTTTCTCTAGACCTCAAGCTAAACCCAGAGAACACGTCCACCTCTCCTAATAATACTGATAATGAATTTTATACTTCTGTGGATATTAATACTATTCCCCTGCCTGATCATCATATTCATAAAATGATTGAATTATATCGTAAATATCCTCAGTTGTGGAATCCAAATCATTTGGATTATAATTCACGTAATTTAAGACGTCAAGCTTGGTGTTCACTGACAACGGAATTTAACACCATCGTGGGTAAACAATTCTCTTGGCGCACTATGCATCGTAAATTAACAGATTATGCCAAATATTATAAGAAACTAATAACGGAACAGAAGGATTATGAGGAATTGGAGAATAAATGGACTTTTTATGAGGACTTTAAGTTTATGGATGATGTTCGCAATTTTGAACTTATGTGTAACCGTCTACAGGAAGAAAACAATCTGCAAATAACAACAGAACGTTTAAAAAATCGCCTCATCGAACTAAGAGCTCAATATAGATTAGCGAAAAAGCAACgtttaaaatgtgaaaaaaatgaacaaagatTTTCTACCGATTTTGAATTCTATGAAGCTCTTAACTTTCTAGATCCCCATATAGACCCCTTTATATGTGAatgtaaaatagaatttaaaaaacttaccgATTACAATCATCATGTAAAAAAAGAACACGAAAAGAAAACTATCCCGAGAAGGCGCACCATTTCATTGTTGTCGCATTTAGCAGCAgaagataaaaatttagaaaatatttgtcatatatGTGGCATTAAATTTACCACACGCAGTAATTTAGTGCATCATATTAAACGTCATGAAGGCATTAAGAATTATGAATGTAACATATGTGCGAAAAAGTTTTATGCTTCTCATCCTCTAAAAGTTCACATAAGATCACATACTAAAGAATGTCCTTATACATGCGAAAAATGTGGCGTATCTTTTGTAAGTGCGAGTAAATTGAATCAGCATGTTAAACgtcatttagataaaaaagattATCAGTGTGATTATTGTCCTAAGGCTTTTTATACGGGCTTTGAGAAGGATCGTCATGAGAAGAGACATTTGAATATAAGAGAAAAAGTATGTCCCATTTGTGGTAAAACATTTGTGGCGGGATCTTCATATTATGCTCATATGATGTTGCACAGTGATACAAAACGTTTTGAATGTGATAAATGTGACATGAAATTTGCTCAATATGCTggtttatataaacataaaaaaagatatCATTAA
Protein Sequence
MNKILNHDNYNNNNDDGENNILEAGEKTLLRDHLKCGEVYTWRCAGELYAIECKLCDDHPLCPLSEFPQHMEIWHTEWQEQSSESEQQQEDLFYTDNDEDDEEHNVDYTLAFTTQDSGLFETSDRLQNVRMSNDDVLPNDSTLEPFEQVLIEQDNTIDSTQLKEDVNKTETRLKDVNKQVAEEATTAKGVKVSEQLEINVNKNLTLEKHKQRINSLEITENERESSELQTITESENDFNANENETKRKQFFKNNFRKIVKKTKNSRKNLEKLKGIKEIETETSDNDVRESEESETYENLIKSNKITKTIKYNLKKIKNIKRNLKEILKNSTKFQKITETETSETSENELSEREELLTKGKLQKSIKTNLRKFKEIKANKRNCRGHVKDFSDLEEDFEETESETSENESDFKDKEKIKSNSRKINKNALSSKDFKRKIVKDIKNFTTKKETNEIETPTSDEEGDFSELKNETSETEEEITNNRNNFKFIKNRPKNKIICENNLQNKTEKRKSKRSLKGKTKENIRKINKNKIERKIKEIETEIRENETDETEISETESEIIEIKRKRNENETRKINKNIIQEYETEISENETETKQIGANKTDNTKEYETKKIIKSKRQENKLEMSGNETSEYEITENERELTEIVTDNINEVIIQENESGTSENETNDKEIIQNESLNAEKINNNKLEIRENETNNRNGNKNKRNFKKPCQENTTIQQTRKSPRNLKENLKLKTKTKTLENETELKENETKLKLNGNKTTSKENEIELTEKQNDNEFVLIKKLENVMELKGNEIELNGNETELNGNETELKETPNDNEFVVINKETIKLNQLELIEHETVIGIETEILKDKEGTLGNETKYEMEKRAIRKLNNSSQKYKTNKRNHTNPRKCQRNLKDHLKEIEEILENETVSENETKLEENETVYGIETDLNEIEIFKNKKKFKENERKTIENKKENKTLNSEIETELNKSKLHENKEQNETKLNGNETKTSELIKNNKIYNKFSKSPKYLGGTRKSLRNLKKNKINLPDLQEMDEKKMEYNSNGTFEFNNFEELKNNKANSRKLNKNQLELRERESLEMEQKDLNENETNNSIFSRIKEFKSHESVKSKATKRSLKEGPIEFEEENLNGYETEPDEEDDLYNDKGLEILAKPLYSSTPKWPKRIRKKIAKKNLKEIEKETNEREIAQEISIKTSQTKEQHTFQDPQKLLKRTRSISSPEMPENMEENPIQSLEANLNSSIDSPTANKRTKRESSLESSDILEDYSINTNSFNDLLTATKSTKSEISHELPEIIEEISIETLTSNIKPCEDLLKSPKRIRRGSYAEINSTPNTLTDFPQTLSETPECSLINSEIKMKLQEDPNEISLTPNIEANKRSQRNSKSYQESLELNINSEGNLNQQQDSLIDELYSSNLEFENSNQILANTETESKNSKSNKGKTLQNKEQRKSIETDKSLNLNKPLDARNSLLNPSSFKEVSNKITKQTLVTQYFANKNLKDASQNSSNKDQTSVNTENSCCTLEETTNNILFNSYETSNPSTPSNLILQNNSPHKDNSTPTTLRSLSPLSPKTEEEHFEFYEPKEKLNKNHISHLIKLYREHPRLWDQSHPDFCEPQVCRKSWQQITDQWNEFCKRNFTTAEVRIRISTLCQRYLQERERLALEGELDEAAKFPYYEQMQFLEQQKSLQKRRDLYEQQNEKLLEIYQHFPILWHVSCYKLRQAKERAQAFENISKALKLYSIHLSPMAVQKRIRSLRKCYRLEKIRFLHAQVEQTPFETEFRHYERMQFLDKHIDPFACRICGKIFENLVGFREHLEAENHGNVLQEDSESESENEEEREEINSTNEIANNHIQNIAENNNMFVCNSPLIMEIENPDDILQTFTPLPSTPIPELDAISNLNLSSSETNLNREILDNDLPIIQEVLIFPPNTPLEPLRNVEHIEEDQLIEEIMETVTSNDSFTNQSLDQFINSATNCEEITTNNCLNNFHSSFSNICHDQQVNKTLEIENPSLQQESKPNSLENPLVVKVQCADFSLDLKLNPENTSTSPNNTDNEFYTSVDINTIPLPDHHIHKMIELYRKYPQLWNPNHLDYNSRNLRRQAWCSLTTEFNTIVGKQFSWRTMHRKLTDYAKYYKKLITEQKDYEELENKWTFYEDFKFMDDVRNFELMCNRLQEENNLQITTERLKNRLIELRAQYRLAKKQRLKCEKNEQRFSTDFEFYEALNFLDPHIDPFICECKIEFKKLTDYNHHVKKEHEKKTIPRRRTISLLSHLAAEDKNLENICHICGIKFTTRSNLVHHIKRHEGIKNYECNICAKKFYASHPLKVHIRSHTKECPYTCEKCGVSFVSASKLNQHVKRHLDKKDYQCDYCPKAFYTGFEKDRHEKRHLNIREKVCPICGKTFVAGSSYYAHMMLHSDTKRFECDKCDMKFAQYAGLYKHKKRYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-