Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01166616.1:305-4429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0082 0.86 11.2 2.9 2 19 523 540 522 542 0.95

2 15 0.1 11 7.7 0.7 2 23 584 606 583 606 0.94

3 15 1.3 1.4e+02 4.2 0.4 5 23 616 634 613 634 0.92

4 15 0.0013 0.13 13.7 0.3 1 23 641 664 641 664 0.91

5 15 5.1e-05 0.0054 18.1 1.1 3 23 673 693 672 693 0.99

6 15 0.0042 0.44 12.1 1.5 1 22 743 764 743 767 0.91

7 15 0.0021 0.22 13.1 2.2 1 23 772 794 772 794 0.96

8 15 0.1 10 7.8 0.1 1 23 810 835 810 835 0.96

9 15 0.022 2.3 9.8 1.8 1 23 845 868 845 868 0.96

10 15 0.00059 0.062 14.8 3.5 2 23 874 896 873 896 0.95

11 15 0.0027 0.28 12.7 1.7 2 23 900 922 899 922 0.92

12 15 0.56 59 5.4 2.7 1 23 928 951 928 951 0.94

13 15 0.0006 0.063 14.7 0.4 1 23 956 978 956 978 0.98

14 15 2.5e-06 0.00027 22.2 2.2 1 23 984 1006 984 1006 0.99

15 15 0.32 33 6.2 0.6 5 23 1022 1041 1012 1041 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0082	0.86	11.2	2.9	2	19	523	540	522	542	0.95
2	15	0.1	11	7.7	0.7	2	23	584	606	583	606	0.94
3	15	1.3	1.4e+02	4.2	0.4	5	23	616	634	613	634	0.92
4	15	0.0013	0.13	13.7	0.3	1	23	641	664	641	664	0.91
5	15	5.1e-05	0.0054	18.1	1.1	3	23	673	693	672	693	0.99
6	15	0.0042	0.44	12.1	1.5	1	22	743	764	743	767	0.91
7	15	0.0021	0.22	13.1	2.2	1	23	772	794	772	794	0.96
8	15	0.1	10	7.8	0.1	1	23	810	835	810	835	0.96
9	15	0.022	2.3	9.8	1.8	1	23	845	868	845	868	0.96
10	15	0.00059	0.062	14.8	3.5	2	23	874	896	873	896	0.95
11	15	0.0027	0.28	12.7	1.7	2	23	900	922	899	922	0.92
12	15	0.56	59	5.4	2.7	1	23	928	951	928	951	0.94
13	15	0.0006	0.063	14.7	0.4	1	23	956	978	956	978	0.98
14	15	2.5e-06	0.00027	22.2	2.2	1	23	984	1006	984	1006	0.99
15	15	0.32	33	6.2	0.6	5	23	1022	1041	1012	1041	0.88

Sequence Information

Coding Sequence: atgGCGGTTAATGTTTCCACAACGTCCAGTGTCTGTTTATATTGCAAAACGTCGGACGGCGATACTAAAAAGGAATTTCACGAAATATATGATGAAGTGGGAGTAGAATTACAGTTGCCCACATTGGTGGAAAAGTTTTTCCACATCAaagtacaaaataaacaaaaacaaagtctATGTGATGATTGTGTTAATCGTTTAATAGAGTTATTTGATTTGGAAGAACATGCCAAAGAGGAATACGCTAAGGTAGATGATTCAATAGGAATAACAAGTTCGAGAAGATTAATTCAAGAGCCGCAAAGTTCCCTGGAAGAAAACAATAAATCGTTAGCTCAAAAAGACTGTACAATATTCGAGGAAAGGGAGATAACGGTGCAAAATAAAGATAATACTGCTGATTATTTGGATCTTGATGAGGAGCAAcaaattatttcacctagtaataataatatcgaaagtaataaattagaaattattgtCCATACCCAGGACCATCTTAAAgaacaaaatcaaaatgatttggaagaaattgaaaaaacagaaaataaaaataatgaatttaaaaatgatcttgttgaaactaaaatattaaataaacataatattgaaaattcccATTCGCAACATATATTACaagtaatttttgaagaaaaaaatgaagttCAGACCGAAACTGAATCCTCAAGAGAAAGTGAGTCGGAATACAATAAAGATGATGCTGTTTATGatgagaaaaattttgttatagaaaatttggttaatacaaatttaaataaccatgaaattgaaataatgaatgaaaatcAAATAGGTGATGATTTAGAAGAAGGAGTAGAAGAAAATTCTATTGGagaaattgaatataaattaaaattaagtaacgAAAATGATAATTATGTCGATGAAAATCTTTATGAAAATGAAGAAATATATGAAACATTATTGGATTCTAGTACGATCGACTCTGAAAATGATAATCAGAATTTGATAGATGAAGTGATACATTTTGAAGAATTGGAAGATGTGGTATTTAAGGAGGAAGAATCACTTAGTTTTAATGAATCTTCCAATAATGACGATGCTTTagatttaaattctttacaaaaaaataacgaaCAATTTTTGGAAACTAATAGTAAATCCATAAATTCGAATGATAATGATATGCGAATCATTTGTCCAGATAACATTGAAATAGATGAGATTATTGAGAAGGATGTTGAGGATGATACATATTCTATAGAAGAGGAATATTTAATAGAAGaaATTGCCTGCTCTCAAGAATATGATTGCGTTGATTTAAATGAgtatttagaaaaagttttactAACAAAATTTCCAGATCTAGAACTAGATTGGAGTGTAGAATGTAAATTGTGCCttgaaaaatatcaaacatttcGGGATTTGTTAAATCACAGCTGCATTAAAGAATTTGAAGATGAACAACAATATAGTTGCATTATTGAAAATTGTGAAGaagatattaataatttaaatgcattAGCCAGACATTTAGTATTACGACACTATGATAACTTAGAAAGCACCTTAATTTATGGCAAATGTCCAGATTGTCAGAAAacgttttcaaattttctagattttaataaacattcttGTTGTCGTACCATAAAAAAGAGAGCAGGATCACGAAATTATTGTCAATCTTGTGATATGGATTTTCAATctttaaaaagatatGTTTTTCATATGCAATTCCATTTGACCAATCATCGACCAAAAGTTTGCTTATTGTGTGGAGAGTTGTTTAATAATTCCAATGAATTCTTTGAACATACTCAATATAAACACAATCCTGATGCGGATCTTGCATGTATAAAATGTGATcgcttttttaaggaaaaagaaGTGTTTGATAGTCATATGGAATTGCATGAAGATTCTAAATATCAATTTGCTTGCATTTATTGTCCTAAAATGTAcactaataaaattagtttaaatcaGCATatggatatttatCACAATAATAAATCGAAAGCCATGTTATGTGAATATTGTGAAAaagaatttgttaataatacttCATATCGTAATCATATGAAATCCCATGCCTCCGATGTTCAAGTTGAATCTTTTATATGCTGTGCATGTGGTTTCATAACTAATAATGATGATTGCATTAGgGATCATACAGAAAGTGATAAAGACTCACCTTGTTATGCTTCGCCCATAGATGAACAAATTATAGGATTTGGTTATACTTGTGAAAATTGTTCCAAAGACTTTCAaactattaaacaattaaaacaacatCGTTTGAGTAGTGAACATAGGGATGATGTCTTCTATTGTGGTATATGCCGTCGAGTATTTAAGAATTTACGGCAAATGCGCAATCATACCACTAATCATAAAGAACTGCCCAAATGGGAGGAAGCATTTCCCATAACAAGATATTTTGTATGCAATATAGGAgATTGTCAAGAATCTTATCCCATTTGGACTTCTTTGTATTATCATAAAAAACGTCCACACAAAATTGCGGAAGAAAAGCCAAAGGAATTTAAATGTCAATTTTGCCAACAAATATGTAGTTCGAAAATGTCTCTGGCCGTTCATGTAGCTAGAAGTCATAATAATTCTAATATTACATGTACTCACTGCAAACAATCCTATAGATCACAAAAACTATTACAACAACATATTGATAAATTTCACACTCCCGTGAAATGTGATATTtgcttaaaagattttaaacatCGCCGCAATCTAGAATCCCATAATCAATTAGTGCATCTTAATGTAAAACGTTATTTCTGTTCACATTGtgaaaaaggatatttttataaaagtgaaaaagaTGCTCATGAAAATAAAGTTCATCcagaattttcatataaatgtgaaatatgcaattttataaCTAATTATCCAAAGTCATTAGAGATTCATATGGACAAACATAACAATCAACAGAAATTTAAATGtacaatttgtaataaaacatttggacgaaaacaactattaaatgtacatttaaaaaggcatcaaaataaaaaagaATACCTTTGTTCTAAATATGTTCCCGAAAGCAATTGTTCGGCTGCTTTTTATACTcacaatcaattaaaaactcatATTGAGAATAAACATCCcgattcaaaatatatcaataataataaacgtaAAAGAAATTCACTTAATACATTACCAATCGAAGAGAGTGACGAAGATAGTTATGAAATATATACTGATGATAATGACAGTGTACAAGCAAAACGTTCAAAAACTTGTTCCACAAAGCTAAAAAATAGTTACATTGATAATGAAGATAATGATTACGAAgaatataataatgaattaacattgaaaaatgaaatggaattaGTTGAAGGAAGTAGTAATGATGAAACGATATGTGCTTGA
Protein Sequence: MAVNVSTTSSVCLYCKTSDGDTKKEFHEIYDEVGVELQLPTLVEKFFHIKVQNKQKQSLCDDCVNRLIELFDLEEHAKEEYAKVDDSIGITSSRRLIQEPQSSLEENNKSLAQKDCTIFEEREITVQNKDNTADYLDLDEEQQIISPSNNNIESNKLEIIVHTQDHLKEQNQNDLEEIEKTENKNNEFKNDLVETKILNKHNIENSHSQHILQVIFEEKNEVQTETESSRESESEYNKDDAVYDEKNFVIENLVNTNLNNHEIEIMNENQIGDDLEEGVEENSIGEIEYKLKLSNENDNYVDENLYENEEIYETLLDSSTIDSENDNQNLIDEVIHFEELEDVVFKEEESLSFNESSNNDDALDLNSLQKNNEQFLETNSKSINSNDNDMRIICPDNIEIDEIIEKDVEDDTYSIEEEYLIEEIACSQEYDCVDLNEYLEKVLLTKFPDLELDWSVECKLCLEKYQTFRDLLNHSCIKEFEDEQQYSCIIENCEEDINNLNALARHLVLRHYDNLESTLIYGKCPDCQKTFSNFLDFNKHSCCRTIKKRAGSRNYCQSCDMDFQSLKRYVFHMQFHLTNHRPKVCLLCGELFNNSNEFFEHTQYKHNPDADLACIKCDRFFKEKEVFDSHMELHEDSKYQFACIYCPKMYTNKISLNQHMDIYHNNKSKAMLCEYCEKEFVNNTSYRNHMKSHASDVQVESFICCACGFITNNDDCIRDHTESDKDSPCYASPIDEQIIGFGYTCENCSKDFQTIKQLKQHRLSSEHRDDVFYCGICRRVFKNLRQMRNHTTNHKELPKWEEAFPITRYFVCNIGDCQESYPIWTSLYYHKKRPHKIAEEKPKEFKCQFCQQICSSKMSLAVHVARSHNNSNITCTHCKQSYRSQKLLQQHIDKFHTPVKCDICLKDFKHRRNLESHNQLVHLNVKRYFCSHCEKGYFYKSEKDAHENKVHPEFSYKCEICNFITNYPKSLEIHMDKHNNQQKFKCTICNKTFGRKQLLNVHLKRHQNKKEYLCSKYVPESNCSAAFYTHNQLKTHIENKHPDSKYINNNKRKRNSLNTLPIEESDEDSYEIYTDDNDSVQAKRSKTCSTKLKNSYIDNEDNDYEEYNNELTLKNEMELVEGSSNDETICA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261447; iTF_01259598;
90% Identity: -
80% Identity: -