Preg004978.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01001746.1:6432-10904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0003 0.031 15.7 1.9 1 23 115 137 115 137 0.96 2 10 0.42 44 5.8 5.2 1 23 143 165 143 165 0.98 3 10 0.00027 0.029 15.8 1.7 1 23 171 193 171 193 0.98 4 10 0.00038 0.04 15.4 2.1 1 23 198 220 198 220 0.98 5 10 2.1e-07 2.2e-05 25.6 2.0 1 23 226 248 226 248 0.98 6 10 0.0029 0.31 12.6 1.2 2 23 254 276 253 276 0.92 7 10 0.0022 0.24 12.9 1.0 1 23 290 312 290 312 0.97 8 10 0.00081 0.085 14.3 6.8 1 23 322 344 322 344 0.98 9 10 2.7e-06 0.00029 22.1 0.3 2 23 351 372 350 372 0.96 10 10 0.0018 0.19 13.2 2.8 1 23 377 400 377 400 0.96
Sequence Information
- Coding Sequence
- aaAAGTGGTATTTGTAAACAGATAAATGATGATCAGTTTCTGGCATTGATTAAACTATTCAAAGAAAATGAATGTTTTTGGAATGAAAACAATATCTACCACACTTCGGTAATAAATAAGCAAGAAATCTTAAAATCAATGACAaatgaatttacaaaaatttgtaatttaatagaTTACAATGTTGatattatgcaaaatactatAGAAGAAGTAATCGAAATGGCTAGAGAagagaatgcaaataaaatgaaatttgtagcCAGTAATAAGAATAATGCATATGAGTctagcaataaattttataaagaaatacaaTTTCTATTACCTCATGTTGGTCCCTTTCAATGCAATTATTGCCCGAAAACATTTACTGATATTTACgcttataaatttcatatatcgAGACATGATGGTACCAAGCCCTTTAAGTGTATGGTATGCCCACGCGAGTTAACacataaaaaagaatttgtatGTCATTTAAGGCGACATACAAAAGAGTGTCCCTTTAAATGCGATGCATGCGAGAAATCATTTCCTAGTAAAAAAGAATGGCATCGACATGTCATAAAACATGGCTCTAAACCGTATGTTTGTGAATTATGCGCCGATAGTTTTTATACCCAGCATCAACTAACTAATCACATGAAAAATCATAACAACATACGTGATCACGTTTGTCCCGAATGTGGTAAAGGCTTTACACATCGCGGTTTGTTAAGACAACATTTACAGACTCATAATAAAACGAAATGTATTTGTTCACTTTGCGATAATATATATTCGAATCCGCGCAGTTTGCGAAAACATTATGTAAGAGTACACGAATCTGGACAGCAACCTTCGGCAGCTTCTATGGCCCAGTATAATTgtcaaatatgtaaaataacattttctacTATACAAGATGCAAAGCAACATCGAAAGGAACACAAACAAAGTAATCCTGCTGAACGTCGACATGTTTGTGATATATGTGGTCATCACTTTGCTTATCCCAGAAATTTGCATGATCACAAAAAGACCCATTCGAATATACGTGATCAAGTGTGCGATGTGTGTGGAAAAGCTTTTACAAATTCGAATTTATTGaatcaacataaaaatgttcatacagGCGAAAAGTTTGTATGCAAAGCTTGTGGAAAGGATTATGCGCACTATCGTGGTCTATGTCGACATATTACAAAAGTTCATGGTATTAATATAAGAGACTTGGATGCTTGGTTGGAAAAACAAAAGATGACACCACCAACgcagtaa
- Protein Sequence
- KSGICKQINDDQFLALIKLFKENECFWNENNIYHTSVINKQEILKSMTNEFTKICNLIDYNVDIMQNTIEEVIEMAREENANKMKFVASNKNNAYESSNKFYKEIQFLLPHVGPFQCNYCPKTFTDIYAYKFHISRHDGTKPFKCMVCPRELTHKKEFVCHLRRHTKECPFKCDACEKSFPSKKEWHRHVIKHGSKPYVCELCADSFYTQHQLTNHMKNHNNIRDHVCPECGKGFTHRGLLRQHLQTHNKTKCICSLCDNIYSNPRSLRKHYVRVHESGQQPSAASMAQYNCQICKITFSTIQDAKQHRKEHKQSNPAERRHVCDICGHHFAYPRNLHDHKKTHSNIRDQVCDVCGKAFTNSNLLNQHKNVHTGEKFVCKACGKDYAHYRGLCRHITKVHGINIRDLDAWLEKQKMTPPTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -