Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01166524.1:4063-8593[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.017 1.7 10.2 0.1 3 23 33 53 31 53 0.96

2 17 0.023 2.4 9.8 2.1 1 23 59 82 59 82 0.93

3 17 0.46 48 5.7 0.7 3 23 87 109 86 110 0.85

4 17 0.0013 0.13 13.7 0.3 1 21 117 137 117 138 0.95

5 17 4.6e-06 0.00049 21.4 0.9 1 23 146 168 146 168 0.97

6 17 0.00013 0.013 16.9 3.5 1 23 174 196 174 196 0.98

7 17 8e-05 0.0085 17.5 1.3 1 23 202 224 202 224 0.95

8 17 0.019 2 10.0 1.4 2 21 231 250 230 251 0.95

9 17 0.5 53 5.5 0.2 2 23 680 702 679 702 0.94

10 17 0.34 36 6.1 0.6 1 10 726 735 726 748 0.79

11 17 0.63 66 5.2 2.3 1 23 756 780 756 780 0.92

12 17 4.5 4.7e+02 2.6 0.9 3 23 786 807 786 807 0.94

13 17 0.15 15 7.2 0.3 2 21 820 839 819 840 0.91

14 17 0.00022 0.023 16.1 0.9 1 23 848 870 848 870 0.98

15 17 6.9e-06 0.00072 20.9 1.8 1 23 876 899 876 899 0.97

16 17 7.1e-05 0.0075 17.7 1.3 1 23 905 927 905 927 0.98

17 17 0.00046 0.048 15.1 1.1 1 21 933 953 933 954 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.017	1.7	10.2	0.1	3	23	33	53	31	53	0.96
2	17	0.023	2.4	9.8	2.1	1	23	59	82	59	82	0.93
3	17	0.46	48	5.7	0.7	3	23	87	109	86	110	0.85
4	17	0.0013	0.13	13.7	0.3	1	21	117	137	117	138	0.95
5	17	4.6e-06	0.00049	21.4	0.9	1	23	146	168	146	168	0.97
6	17	0.00013	0.013	16.9	3.5	1	23	174	196	174	196	0.98
7	17	8e-05	0.0085	17.5	1.3	1	23	202	224	202	224	0.95
8	17	0.019	2	10.0	1.4	2	21	231	250	230	251	0.95
9	17	0.5	53	5.5	0.2	2	23	680	702	679	702	0.94
10	17	0.34	36	6.1	0.6	1	10	726	735	726	748	0.79
11	17	0.63	66	5.2	2.3	1	23	756	780	756	780	0.92
12	17	4.5	4.7e+02	2.6	0.9	3	23	786	807	786	807	0.94
13	17	0.15	15	7.2	0.3	2	21	820	839	819	840	0.91
14	17	0.00022	0.023	16.1	0.9	1	23	848	870	848	870	0.98
15	17	6.9e-06	0.00072	20.9	1.8	1	23	876	899	876	899	0.97
16	17	7.1e-05	0.0075	17.7	1.3	1	23	905	927	905	927	0.98
17	17	0.00046	0.048	15.1	1.1	1	21	933	953	933	954	0.95

Sequence Information

Coding Sequence: ATGCAGTCCGATGACTCCGATCCCTCTACATCCGCGGCAGCTGCTGCTCAAGCCATGCTTGTCAAACTCTCCACCGATGGTGTGCCCAAACTTTTCTGTCCTGTTTGCAATAAAGCTCTCGTATCCCTAACCGGCTATgtaaaacatgttaaaaaacaTGAACCTCCTGGTGGTTTTCTTTGTCGCTATTGTGAAGCACGCTTTTGTTCCgatgaagaattaaaaaaacatcgTGAATCTGTACACACCACTATAGCTTGCCGTCTATGTAAAGATGTTACTTTTACCAATGAAGATGATTATCGGTCACATATACGTGATATTCATCATGGTGTCGATAGAGAAATATTTACATGTAACAAATGTGGAGCTACTTATAAGACAATTGATCCTTATCGTCGTCATATGGATACAGAATGTGGTCgtataaaaccttttaaatgTGATAAATGTCCCATGGCATTTGTtacgaaatataatttaaaacaacatttagAAAATCATTCGGgtgaattgaaattttgttgtagttattgTGGAAGAAATTTTAAGCAGAAAGCACGTTTGGTGGAACATGAAAGGACACATACGGGAGAGAAGCCATATAAATGTGATGTTTGTGGCAAAAGTTTTTCCCATCGTGAAAGTATTGTCACCCATTCCTCCATTCATACTGGCATACGTTTGGTCGAATGCAAGGGATGTGGTTCACGTTTCTCTTGTTATTCCAATCTTATAAAACATCGCCGTAATCGCCCTGAGACCTGTGGTTTGCCACAATTTGATCCTCCACGAAATCGTATAAGAAAACATACTTCAAGAATTCCGGCCACTTTAAATCCCACCTCTGAAATTAAAGTGGTTAATGTTAATAAAGTCATTAAACCCGATGATAAAGAAAAAGTGGCTTCTTTGAAAAAAGAATTACccgataaattatttaaaattaaacctaCAGCACGTAAGCGTACCGGTCTTCCTCCTGCTCCTCCTCCCACCTTACGCAAAAGAAGTCCCCGGAAAAAACCTGTCGAATTGAATGTTATAGAAGATGAAGAATTCAAAATGGAAGAAGATTTTGAAGATGATGAAGATGAATATTTACCTTAtaagacaaaacaaaaaactgatataaaaactttagaaGAGAATAGTTTACCACCACCTGTACCAGAGATTGTAATGGCTGATAAACCTTTACAAAATCCTACCAGTACACAATGGTCCGATGATAGTGAAGATGAGTATGTGCCAGACTTTGAGCCAGCAGATTCTGATACAGAAGATGAGGAGGATAAGAgtgtaaaagattttaaaattcctttaccGGCTGCGGGCATTAAGCAAGAAAACTATGATGCAGAAGAGGAAGATATAGAGGCCATAACTACTAATATACAAATAGAGCCATTGGGAGATTTTGAATATACCCGCATGGATAACTATAGTGCAGAAGTGAAATATGAAGAAGAGGATGAAgataatttatttgatgaaaaagATCGTATACTGGAGcatctattaaatgaaaatgattaCACCCATATGCAGGAAGTAGCAGAACAAAAACCTATTGAAACTAAAAGAAAACGGAACCGCAAATCGGCTGTGTCAAAGGATAAACTGGAAACAGttgatattttaaaggaaaccGAAATGGCTTATATAAAGTATGAAGATAGTGATGAGGTAGAAGATCCTGAAGAGGATATTTTGGAGGAAAAACCAGAGctGCTGGAAGTTACCAAGGACGACATTAAAGATTGTTATGTTTTGCTTGAAGATATAACCAATTGTTTCCCCACATTAAAGGAAATCCCTAGCGTTAAAGTGCCACGTAATGCCCAACCTTTCTTTTCCAAATCGGAaaagataaagaaatttattaaaaaacgtgGCAAATACCGCCCTAGAAAACCAAAAACAGAACCAGGATCAGATGATGAGAGTAAATCTAAATCTTATCGTTTGGCTTCCATTTCAGCCAAACAATTAAAGGAACGCATGAAATTGCTAAGAAAACGTGATAAATCTTGGCAATGTCCCGACTGTATTAAGATCTATTATATGCGTAAACcttatgaaaaacatttaagGGATGACCATAAGAAATCTGAAGAATTTATTAAGGAGATCTTTAAAAACGATTTGGAGGAGGTCAAGACCGATGATGTATTCAAGTGTCATATTTGcgataaaatctatttaatggAAAAACGTTTACTCTCACATATACCCAAACATGGTCCAGATGGTAAATTAATACACAAATGTCCCTGCTATTGTACTCTATACTTTGCCACACGTGAAGAGGCAACAGCTCATGCCCAGGATAAACATAAGGACATGTTGTGGTGtgaaatatgtgaaaaatatatgaCTGGCTGTGATGCTCTTAAATCGCATAAGGCCCGTATTCATGGCGGTAATAAGGACTATAAAAATTCTCGTAATTTAGTGTGCATGAAGTGTGGCAAAAAATTCCTAGGACGCACTCAATTAACTGATCATGAACGTTCCGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAGGAATGTGGCAAATGTTTGACTACGGCGGGTATTTTAAAAACCCATATGTTACTACACAGTGATGCTAGACCATACCAGTGTGATAAATGTGGCAAAACGTTTAAGATTAAGGCTCAATATAAAACGCATATTAAATATGCTCACACTGATGAGAAGCGCTTTAAATGTCatttgTGTCCAAAAGAGTATCCTTATCGTGAGAGTTTGCTGACACATATGTCTGTGCATACCGGCATTAAACGTTTTATGTGTAATGGCTGTGGCAAACGTTTCACTTGTGTATCTAATTTACAAGCTCATCGCAAAGTCCAAGCAGAAACTTGTGGTCTTTTACCCTTAAATGCCAAGGCTACTCAATATATGGGAGTACAAAAAGGTAATCTATTAATGGGTGCTAAACCTGAGCCTGGCTTGGATTATGTAGAGACACGTACTTTTGTAGCCAAAGAAGTTATAACTCATGACTTGCCCATGGCCCAAGAATTACACAATCAAACAAGAAATATGCAACAAGATAATTCCTTAAGTGATGGCATACCACTTAATTATGTCACCTCAGGATCTGAAATTATTCTTATGTACAATAGAGATTAA
Protein Sequence: MQSDDSDPSTSAAAAAQAMLVKLSTDGVPKLFCPVCNKALVSLTGYVKHVKKHEPPGGFLCRYCEARFCSDEELKKHRESVHTTIACRLCKDVTFTNEDDYRSHIRDIHHGVDREIFTCNKCGATYKTIDPYRRHMDTECGRIKPFKCDKCPMAFVTKYNLKQHLENHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECKGCGSRFSCYSNLIKHRRNRPETCGLPQFDPPRNRIRKHTSRIPATLNPTSEIKVVNVNKVIKPDDKEKVASLKKELPDKLFKIKPTARKRTGLPPAPPPTLRKRSPRKKPVELNVIEDEEFKMEEDFEDDEDEYLPYKTKQKTDIKTLEENSLPPPVPEIVMADKPLQNPTSTQWSDDSEDEYVPDFEPADSDTEDEEDKSVKDFKIPLPAAGIKQENYDAEEEDIEAITTNIQIEPLGDFEYTRMDNYSAEVKYEEEDEDNLFDEKDRILEHLLNENDYTHMQEVAEQKPIETKRKRNRKSAVSKDKLETVDILKETEMAYIKYEDSDEVEDPEEDILEEKPELLEVTKDDIKDCYVLLEDITNCFPTLKEIPSVKVPRNAQPFFSKSEKIKKFIKKRGKYRPRKPKTEPGSDDESKSKSYRLASISAKQLKERMKLLRKRDKSWQCPDCIKIYYMRKPYEKHLRDDHKKSEEFIKEIFKNDLEEVKTDDVFKCHICDKIYLMEKRLLSHIPKHGPDGKLIHKCPCYCTLYFATREEATAHAQDKHKDMLWCEICEKYMTGCDALKSHKARIHGGNKDYKNSRNLVCMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHSDARPYQCDKCGKTFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKEVITHDLPMAQELHNQTRNMQQDNSLSDGIPLNYVTSGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: iTF_01261217;
80% Identity: -