Preg036417.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01166235.1:37622-39656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.4e-06 0.00046 21.5 1.5 2 23 189 211 188 211 0.97 2 11 0.00037 0.039 15.4 1.7 1 23 230 253 230 253 0.92 3 11 0.0047 0.49 11.9 1.3 1 23 265 288 265 288 0.98 4 11 0.00028 0.029 15.8 2.0 1 23 295 318 295 318 0.98 5 11 1e-05 0.0011 20.3 0.2 2 23 420 442 420 442 0.96 6 11 7e-06 0.00074 20.8 3.7 2 23 450 472 449 472 0.95 7 11 0.061 6.4 8.4 2.2 2 23 495 516 494 517 0.94 8 11 1.4e-05 0.0014 19.9 1.3 1 23 523 545 523 545 0.96 9 11 6.3e-06 0.00066 21.0 1.3 2 23 552 573 551 573 0.98 10 11 2.2e-07 2.3e-05 25.6 0.9 2 23 580 601 579 601 0.98 11 11 0.0033 0.34 12.4 0.2 5 21 611 627 607 631 0.86
Sequence Information
- Coding Sequence
- atgaatggaaatacaaaacaaaaatgtagaGGATGTCTTAAGGAAAGTGCAAAAAGTTTTCCTCTAAGCAAACAGGCAAAAGGCTGCAATCCTAAGACAACCTACAGTCAagtattaaaagaatatatcaAATTAGAGtttccAAAGGACTATGAACATTTAATGCCTCAATATTTATGTTCTTTATGCTGTCGTGAACTAAGAAACCTTTACAACTTCATACGAAAAGTCCATCATTGTAATAATAAACTTCTTAATGCGATTTCTAAACAATTTGATTGTTTACAAGAAAGAACAATTGATTTGCCACAGACCGCAAATAAATTAGAAGAAAAATCTATAGATATCAAAATAGAAAGTGTTATTGATGAagacaatataaaaaatcaaagagATGAATTAAACATTGATGAGCCCTGTGTACATTTAAAATCCAAAGAATTGGAAGAATCATTAGAAAGTGATATTCCTATTGAAAATGTTAGAAACgaagaaagtattttaaaacattctaTAATTTCCGATACATCCCATAAAGTGACTCACAATGCCGAGACAACTTCAAAATGTCCCATATGCAACAAAACAATGAGCCGACGTGATAATTTATTGACACACATGCGTAGACAACATGATATTGTAGAGCCTGGAGAATTATTACGACAAGAAAATAAACCAAAAGATATTTTTGCCTGCAAATTATGTCCTAAGAAATATACcagcaacaaaaattatttaaaacatctgGAAGATAAACATAACACCTATTCCaaagaaaacgaaaataaaatttttcaatgtctTTCATGTGATTATACAGCAAGATCTATGTCAACATTAAACTATCATATACGTTCCAAACATGGAACAGAAGAGGAAAGATACAAgtgtaaattttgtacaaaacaaTATATACAGAAACGTGAATTATTATGGCATGTGAAAAAATGGCACAAAGAATTAATTAAGACCCTTAAAGCTCAAGCTGACAATAAAGAGGAACAATGGGAAATTTTGCTTGGAAAATGCGAAAACTCTTTAGATAATAATTACGACTCTTCATCATCTTCTTCGTTCAGCGATGATAATATTCCTTTGGCCCAAAGAATCTCCAAGTCTCAGGctaccacaaaacttattaatcAAGTAGAAGGGCAGAtagaaaaagaattatttagtGATGAGGAATTCATAAGAAACTTGTTGGGTATGAAAAAAAGATCACGTACATCTCaaggaaataaatctttagctAGGCGCTGTGATGAATGtggtaaaatttacaaaaactataGTGCTCTTTATGCCCATCAACGTTATGTACACGTTAGTAAAGAAGAATATTCTTCATGTCCATATTgtagtaaaaaatgtaaacgaaAGTCCAATCTTCAACAACATATTAATAATGTTCATGCTGATAAAACTTCAAaagatattgttaaaaaatcgacatcctcaaaaaataaagaaaagcgTATAATGTGTACAGAATGTCCATATATTTGCGGTACAATAACTACACTAACAATTCATCGAAATCGTCATCATACTGGCGAAAAACCTTACAAGTGTGAATTTTGTGGTAAATCGTTTGTTGTATCATACGATTTGAAACTTCATCGTTATTTACATACCGGAGAAAGACCTGTCAAATGTCCTATATGTTCGAAGGGGTTTCAAGACAAAGCTCATTTGGCTAAACACAAACGTATGCATGTCAGTTTACCACCTAATCAGTGCGACGAGTGTGGTAAACGTTTTACTCAGCGTTATAATTTATTGGCACATAAACGTATTCATTtaagagcaaaaaatttaaattgtattgtatgtgataaagtatttgaaaataaatcactTCTAAATTTACATCGAATAAATGAAAATCATCATGATTTggataaatatgaataa
- Protein Sequence
- MNGNTKQKCRGCLKESAKSFPLSKQAKGCNPKTTYSQVLKEYIKLEFPKDYEHLMPQYLCSLCCRELRNLYNFIRKVHHCNNKLLNAISKQFDCLQERTIDLPQTANKLEEKSIDIKIESVIDEDNIKNQRDELNIDEPCVHLKSKELEESLESDIPIENVRNEESILKHSIISDTSHKVTHNAETTSKCPICNKTMSRRDNLLTHMRRQHDIVEPGELLRQENKPKDIFACKLCPKKYTSNKNYLKHLEDKHNTYSKENENKIFQCLSCDYTARSMSTLNYHIRSKHGTEEERYKCKFCTKQYIQKRELLWHVKKWHKELIKTLKAQADNKEEQWEILLGKCENSLDNNYDSSSSSSFSDDNIPLAQRISKSQATTKLINQVEGQIEKELFSDEEFIRNLLGMKKRSRTSQGNKSLARRCDECGKIYKNYSALYAHQRYVHVSKEEYSSCPYCSKKCKRKSNLQQHINNVHADKTSKDIVKKSTSSKNKEKRIMCTECPYICGTITTLTIHRNRHHTGEKPYKCEFCGKSFVVSYDLKLHRYLHTGERPVKCPICSKGFQDKAHLAKHKRMHVSLPPNQCDECGKRFTQRYNLLAHKRIHLRAKNLNCIVCDKVFENKSLLNLHRINENHHDLDKYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259380;
- 90% Identity
- -
- 80% Identity
- -