Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01170082.1:1-3156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.018 1.9 10.1 1.2 1 23 91 114 91 114 0.91

2 12 9.4e-05 0.0099 17.3 1.6 2 23 117 138 116 138 0.97

3 12 7.7e-05 0.0081 17.6 0.1 1 23 145 167 145 167 0.98

4 12 2.8e-07 3e-05 25.2 1.2 1 23 173 195 173 195 0.99

5 12 0.00012 0.012 17.0 2.5 1 23 202 224 202 224 0.98

6 12 1.3e-06 0.00013 23.2 1.5 1 23 230 252 230 252 0.97

7 12 3.1e-05 0.0033 18.8 0.2 1 23 258 280 258 280 0.97

8 12 1.3e-05 0.0014 20.0 0.8 1 23 286 309 286 309 0.97

9 12 0.0004 0.042 15.3 1.8 1 23 315 338 315 338 0.95

10 12 7.2e-06 0.00076 20.8 1.2 1 23 344 366 344 366 0.98

11 12 6.9e-05 0.0072 17.7 0.5 1 23 372 394 372 394 0.96

12 12 0.001 0.11 14.0 0.2 1 22 400 421 400 424 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.018	1.9	10.1	1.2	1	23	91	114	91	114	0.91
2	12	9.4e-05	0.0099	17.3	1.6	2	23	117	138	116	138	0.97
3	12	7.7e-05	0.0081	17.6	0.1	1	23	145	167	145	167	0.98
4	12	2.8e-07	3e-05	25.2	1.2	1	23	173	195	173	195	0.99
5	12	0.00012	0.012	17.0	2.5	1	23	202	224	202	224	0.98
6	12	1.3e-06	0.00013	23.2	1.5	1	23	230	252	230	252	0.97
7	12	3.1e-05	0.0033	18.8	0.2	1	23	258	280	258	280	0.97
8	12	1.3e-05	0.0014	20.0	0.8	1	23	286	309	286	309	0.97
9	12	0.0004	0.042	15.3	1.8	1	23	315	338	315	338	0.95
10	12	7.2e-06	0.00076	20.8	1.2	1	23	344	366	344	366	0.98
11	12	6.9e-05	0.0072	17.7	0.5	1	23	372	394	372	394	0.96
12	12	0.001	0.11	14.0	0.2	1	22	400	421	400	424	0.92

Sequence Information

Coding Sequence: GATCTTAATTATATAATTGGTTCGGATATCTTTACAAGTGAAGGTAACTGTGAGGAATCACAACAATCAACCACATCAGCAGTTATAACGGCTGataataatgaacaaaaaaacgATACCGTACCTTCTGCACAGTCTTTGCAAATTGCTCCTAAATCGGTTTGCAAGAAAGATGGTGATTTCTTTATTTGTCTTCTTTGTGAGATATCACCACAATTTGAACGTCATACGCTGATTGaacattttcaaacatttcaCAATTCTAAATTTCATATGTGTGAACAGTGTCATGAGGGATTTGGAAAACGACAAGATCTAAAAATACATTCAGAAATCGGTCATGTAATACAGTGTGAATTTTGTGAAAGAACTTTCACCACCAATCGTCTTTATCGTGTCCACAAACGCATACACTATAATAATACTAAACCCTTCGAATGTCCAGTATGTCAGAAAATGTATGTATCCAAAGCGATTTTAGAAGAACACATGAACACTCATACCGGTTTTAGACCCTTTAAGTGCAGTGAATGTCCCAAGGATTTTGCTTCGAAATATACGCTGCAAACAcatatgaaaattcataaggaACGTCCACGTCCCTACCAGTGCGATCAGTGTGACAAAcgttttttgaatcaacaaaATCTAAATCAACACAAAAAACTTCACGTTTCAGTGAAAGCTTTTCAATGTGACGTTTGTAACAAAGCGTTCACCACTCAGCATAGTTTGCAAGTTCATAAAATAGTACATTCGGGTCAAAGACCGTTTATTTGTCGCATTTGTGGAAAATCATTTGCGAGAAGACCCGAAATCAAAGACCATGAACGAATTCACACTGGAGAGAAGCCATTCAAATGCGAATACTGTCCTATGGCATTTGCCCAGCGTACTAATTTGGCCAGTCACAAAAAATCAAcacattttaatgagaaattgcACAAATGCGATATATGTTTGCGATCGTTTAAGCGCAAACGTTTGCTGGACTATCACATACAGGCTATTCATACGGGTGAACGGCCCCATAAATGTGAAATATGTGGAGCAGGATTTGTTTATCCAGAACATTACAAAAAACATATGCTCATACACAGTGGCAAAAAGCCTTATGCGTGCGAAGTGTGTGGCAAACAATTCAACAGCCGTGATAATCGCAATGCTCATCGATTTGTGCATAGTGATAAGAAGCCGTATGAATGTATGGAATGTGGAGCGGGTTTTATGCGTAAACCTCTTCTTCTAACACATATGAAGCAAACAAAACATATAAACGATACAATAATTATAAATCAGCCTCAATTTACTCATCAGCAACCAATGGAAACTGGCAGCATTTCCACTACCTCGTCATCCGCAGAATTGGGTAATTTACAGGAAGATGAATCGGAAATCGATGTTGACAATGACCTGAAGCCACAAGATGTCTCTGAAGAAACACTAGATAAGATCATATTCAAAGCTGGAGATTTGTTGGCTGAGACTGTTTCTCCTAACGACGATAATAACGTGATAACAGTTGTAGCCGATCATTTAATCAAGGGGGAATTGGATgatgttaaatatttagaatttgaaGACTTAGAACGTGATGGCCATCAAACATTGACATGGGTGGACATAGGTGGCGatgttaaagtttaa
Protein Sequence: DLNYIIGSDIFTSEGNCEESQQSTTSAVITADNNEQKNDTVPSAQSLQIAPKSVCKKDGDFFICLLCEISPQFERHTLIEHFQTFHNSKFHMCEQCHEGFGKRQDLKIHSEIGHVIQCEFCERTFTTNRLYRVHKRIHYNNTKPFECPVCQKMYVSKAILEEHMNTHTGFRPFKCSECPKDFASKYTLQTHMKIHKERPRPYQCDQCDKRFLNQQNLNQHKKLHVSVKAFQCDVCNKAFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHFNEKLHKCDICLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTHQQPMETGSISTTSSSAELGNLQEDESEIDVDNDLKPQDVSEETLDKIIFKAGDLLAETVSPNDDNNVITVVADHLIKGELDDVKYLEFEDLERDGHQTLTWVDIGGDVKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01162407;
90% Identity: iTF_01261186;
80% Identity: -