Preg003569.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- lov
- Assembly
- GCA_001735585.1
- Location
- MINJ01172656.1:2946-6853[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-19 2.7e-15 56.8 0.0 1 44 19 62 19 63 0.96
Sequence Information
- Coding Sequence
- ccTAGACCAAAAGGTCAACATTCAGCACCCAGAGGTGGACCACCTCGTTCTTGGACAAATGCTGAACTAACCGAGGCCTTACAGCAtgtatggaataaaaaaatgaccACCTCCCAGGCTTCTCGCATATTTGGCATACCCTATAATTCTTTGTTAATGTATGTGAGAGGCAAATATGGTAAATCCTTAAAATTGGAACAATTACGCAAAGATTGTATAAGTGGCCCTCCTTTGGAAATGTTGCAAATGGGTATAAACTCGGGTTCGGGTAAAAACTCTGGTGAAACAAAAGAACAAAGAGAGGCACGTAAAGAAGCTCAACGTAATGCTGCCCAACATCCGCCTAATGATATGGATTTATCAGGCCCCCTAGGGGGACCAGGAGGACCCAGACCCTCTAGCTCAGAACCGGATTTATTAGGAGGACCTAATGCTCTATTTAATCCCTTTAATCCTCAAGGTTTTTATCCCGATTTTCCAGGCGGTTTTCCTGGTTTACCCTTGAGTATGTTGAATTTATTACCACCCTCGGAGAGACAACATGCAGCAGCTGCTGCTGCCGCCATGCATCATTCTATGGGCTTGGATGAGGACTGTAAATCAGATCGCTCTAAACAATCCTCCAATATGGATGATGAATTCTCCATGAGTCGTGAAGAACGCCGGCATTCTGATTTAATGAATAATTCCTCTACACCCTCCGCTTCTTCGCAGCAAAATGCACCTAATAATGCAGCagctcatcatcatcatcatcattcacATTCCCATCATCAGCTGGGTGAAGGGGAAGATTGCCACTCTCGAGCTGCTGATAAAGAACATTTAAGAGCTTCttctaattttaaagaatttaatcaaaatctttATATGACCCGCAAAAAGTTGAGAcgttatagaaaaaaacatttaaaagctCATGATTTACAAGGAGGAGCAGGAGGAGGTGTAGGAGCAGCAGCTACAAATGAAGCAGCCCATACATcttcttttagtaaaaattctttaaatatggAAAGTTTTATGGCTTTACAACCGCCCTTAAATGTTACACCAGCCGTTATAAGGACTTAG
- Protein Sequence
- PRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGINSGSGKNSGETKEQREARKEAQRNAAQHPPNDMDLSGPLGGPGGPRPSSSEPDLLGGPNALFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPSERQHAAAAAAAMHHSMGLDEDCKSDRSKQSSNMDDEFSMSREERRHSDLMNNSSTPSASSQQNAPNNAAAHHHHHHSHSHHQLGEGEDCHSRAADKEHLRASSNFKEFNQNLYMTRKKLRRYRKKHLKAHDLQGGAGGGVGAAATNEAAHTSSFSKNSLNMESFMALQPPLNVTPAVIRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -