Preg014238.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- ttk
- Assembly
- GCA_001735585.1
- Location
- MINJ01166820.1:9704-15633[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-19 1.2e-15 57.9 0.0 2 45 364 408 363 408 0.97 2 2 3.6 1.7e+04 -3.4 1.5 3 12 441 450 441 454 0.83
Sequence Information
- Coding Sequence
- ATGTCAGtgcaacaattttgtttacgCTGGAATAATCATCAACCAAATTTCATTTCGGTCTGCTCTTCTTTACTACACAATGGCACCTTAGTGGATGTTACACTGGCAGCAGAGGGTCGTCAACTGCAGGcccataaaattgttttatcagCATGTAGTTCATATTTTCAGaCCCTCTTTACCACAAATCCATGTCAACATCCGATTGTTATATTAAAAGATGTTCAATATGATGATCTAAAAACAATGGTCGATTTTATGTATTATGGTGAGGTGAATGTTTCGCAAGAACAGTTGCCGCATATACTGAAGACTGCGGAAATGCTTAAAATAAAAGGTCTTGCCGAAATGCCCACCGATCCTGCCAATTTAACAAAATCTGATAGTAAATCATCAAATGATGCTACAGAATTGGTTGGTAGTGGCGGTAATAGTGGACAATTAGGTGGTGGTAATAGTGGAGGTGGAGGAGGCGGCAGCGCTGGCGCCTCTCCAGCCACCCGACGAAAACGTTTAAGAAAATCCTCAAATAATGGATCCGGTGAACGTACCAATTCTGAAGATCATAACACATCTTTGGATGCGGCCACTGCGGGCGGTCTAACCTTGTCCCAAATGAGTCAAATGTCATTCGGTGGTGCAGCTACAAATAGTGCTCTTGGTGGTTTAGCCGCACACTCTTTACACACAGCTAAATTACTTAAGGAAGCATCTAACAATGATTTAGATACAAATCCACAAGATTCAGATAGTTTAGATGATACCCATGGACATGTACATATgcaaattAAACCTGAAGTTGATATGAGCGGAGTACAACAGTCTATGCCATTGGATATATCGGGTGCAACAACACCCTCTGAACATGATGCACCCAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCCTTATACAGTCAAGGTCCAACGCCCACCCAATCACCGGTGGGCAATGCTTCGGGCTCTGGCAATGGCAACAACATGGCTGGTGGGAATTCAGCCAACAATGCCAATATCAAGCGTAAGCGTTCGGTTAATCCACAAggtgatgaaaattttataagggCCCTGGAGGCAGTACGTACGGGTGGTATAGGTTTCTGTAAAGCCGCACGTCTGTATGGCGTTAACAATCGTACTTTATGGCTGGAATATAAGAAACGCGGTTATCCTGTCTCCAGGCCAAGTATTAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCCTCCCCTCCACCACCTGCCAATGCCCAAGACGATACCAATGAGAACTATGATCATATGGCAGCAGCAGTGGCAGCTGCCCAAACAGCCGCTCTAAATATGCAAATACCACCGACTTCCGAAACACCAACACCCTCATTAATGTGTACTCCCCATCATGCTGGCACAGCCGCTGGTGCTACCACACATCCTACAATGGGTGTAATGAGTTTCTTGGATACCCGCCACATGGACTTCCCAGCCAGCCTGCATTCAATGTCTCGACAACGTTATATTGATGCTGGTACTGGCAGTGGGGCCGGAGCGGGTACCATTAATGTTAATCCGGCAGCGGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGSGGNSGQLGGGNSGGGGGGSAGASPATRRKRLRKSSNNGSGERTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAATNSALGGLAAHSLHTAKLLKEASNNDLDTNPQDSDSLDDTHGHVHMQIKPEVDMSGVQQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSLYSQGPTPTQSPVGNASGSGNGNNMAGGNSANNANIKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPPPPANAQDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGTGSGAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749045;
- 90% Identity
- iTF_01194492;
- 80% Identity
- iTF_01194492;