Preg035710.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01167366.1:10427-18545[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 9.5e-08 32.6 0.0 1 38 387 425 387 430 0.89 2 4 6.5e-14 3e-10 40.7 0.0 2 39 442 479 441 482 0.94 3 4 7.6e-18 3.5e-14 53.2 0.0 1 45 496 541 496 541 0.98 4 4 2.1e-19 9.8e-16 58.2 0.0 1 43 548 591 548 593 0.96
Sequence Information
- Coding Sequence
- GGTCTTTTACGTACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATTTGAATGATACAGCTACAGCAACAATAACAGTTTCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTTAATACAACAGTATTTGCAGCAGCCGGACAATTGGTAACATCAACACCTGCCTCAACACcccagcaacaacagcagcaacaacaacgaaaATCCAGAGTACGTAAACGTTCAAAATCGCCCGATCTACAGCAgctgcaacaacagcaacagaatCAACAACATCCCCAGGCgatattaatacaaaatcaaaatcaaGCTGCTATTGTTAGTCTACAACAGACATCGGCTGGTAATTATATACCCGTGTCGGGAGTTCAGACAGTAACCACCAGTGTTGCGCCGGGTggccaacagcaacaacaacagacCACCATTGTAACGGCAGACGATTCGGATTCGGATAAACCGTCActgcaaaaaatttgtaaaactgaGGCTTCCTCAGCTTCACCGGCGTCTACTTCATCGGCATCAGCATCAAATAATGCTGGTGGCGTAACTGCTGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGAcggaaaagataataaaaatatgactaGTTTAGGCATGGGAATGaatggTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACCGTTACAGAACATGTAGATTTATCCTGTAACCCCAGTACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAACATATGATACAACGGCTTGATCAATCTCCCATGCATACCATACATCATCAGACCGGTGACGAATCAAATTCGAATCTGATTGATCCAAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCTAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATCTAGATCAGCAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTGTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCCAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCTCTTAACAATGCACTGGAGGCTTTACGTTCAGGACAAATATCGGCCAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACGCCGGAAGATTTGGAAAGAGCCTTGGAGGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGgcaCTTTGTATGGACGCTGTAAACGCGAGGGCATTGAATTATCCCGTTCAAATCCTACTCCTTGGTCTGAAGATGCTATGAATGAGGCATTAAATTCTGTGCGcaTTGGTCAAATGTCTATAAATCAGGCTGCTATACATTATAATTTACCCTATAGTTCTTTATATGGTCGTTTTAAACGTGGCAAATATGATGTTACCAACACGAGCGGTACTTCCATTAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCgttGCCTATAAGTTGA
- Protein Sequence
- GLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNTTVFAAAGQLVTSTPASTPQQQQQQQQRKSRVRKRSKSPDLQQLQQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAPGGQQQQQQTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDNKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -