Psen018976.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01001000.1:298237-309635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.7 49 4.8 0.2 2 21 1650 1669 1649 1670 0.87 2 7 5.8e-05 0.0041 17.6 0.5 2 23 1765 1786 1764 1786 0.95 3 7 0.022 1.5 9.5 4.7 1 20 1804 1823 1804 1826 0.93 4 7 0.0043 0.31 11.7 4.2 1 23 1868 1890 1868 1890 0.98 5 7 0.0036 0.25 12.0 5.4 1 23 1911 1933 1911 1933 0.95 6 7 0.012 0.82 10.4 0.5 1 20 1957 1976 1957 1978 0.93 7 7 0.48 34 5.3 0.8 5 23 2301 2320 2298 2320 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTTGAACCAGATTCGGGGCGAAGCGGAACGTTCCAAAGACTTCACTTTGGACACATCGTCACTTCCAAGCGAAGCGTATATAACAGCTAACGAGAGCTCATCAAAATTCTTTTCTCTATCCGAAGTGGATTCTACTTTTAGTGTGTCACCTACAAAGGATAGCAACGCGGCTCCCGCCAATGCAGATACACCTATTTCCAACTCTGATTTAATATCTAACCTGTCTCCAATACCGAAACCGAATGATTTGGGGAGTTTTAAAATCGGCAAACAGATAGAAGCTGCAAATATATTGTCAGGTGGTGTTAATATATTTGATGATAATTCATATGATGGTGACGAGTTAGTCATCGATGATAATATACAAGGGGATGATGGAAAATCAAATGCAGAGCAAAGACCAGAAGATGTGTCCAATGTTATGTCCATTGACAAAGCTGATGGAGTGTTGGAGGCTACGGAAGTTTCTGAAGCCATAGGGAGTAAAGATACGGAGGTGGTCCTCCAGATTGATGGAAAAAATGTTGATGCTATAGATATTGGCAATGATCTTTATTTGTATAGAAAACCAGGGGAAGAGGAACTAGCTGCTGTGCAGATAGTTGATGACAATCAACAACAACCATGTTTTAAGTTTCTTAAAGTCAGGGAAAATGCTGAAGGTAACCTCGAAGTATATGAAGAAATAGAAATAGAAGTACCAAAGGAACTGCCCACTAAAAATGAGGACCCTAAAGGTTGTGCTTTAAAGAGTCAAGTGAAAGAAGACAAAATCTCAATAGACTCAGAAAACAACAAGATTAGTGAAAATATTAATAAATTTCCACAAAATGTTATAGAACATAATGATTTAGAGTTAGAGCCAATCAAAGATTTAAAAGAGGAATCTAAAATCAATTTCAATGGAAAAATGATAAAATTTAGTGAGTCACGTAAATCACCTGTTATAAGCACATTTACACCAATGACATACAATTCCACTCCTAATAAGGAAGGTATCCCATTAACAAAAATTATGGTCGACCAACAACTACATCCAAATAGGCATTCAGATAATATCAAGAAAACTATTGAAGTTCATACTGAGAGTAGCAAAAATAAATTAGTGGACACTCCTTCCAAAAATAAAGAACAAATCATTGATAATCTTAGTGAAAATGTTGAAAATGATATTAAAGAAAATACATCACAAGAGCTGCCTCACACTCCTGAAAATAACCTTGTGATAGTAGAAGAGAAAGAATGTATTGACGATATAATAAAGGACAATAAATTAGAGGAAAATAAAATAAAAGAAAGTGTAGATTTAGATATTTTACCAGATTTAAATGTTAACAATGAAATTATTTTGAAAGATCTTACTGAAAAAAACACTACTGATGAAAAATGCATTGTAAAAGTGTTAACAGAAAAAACTAAGGAAGATGAACTGATAAATGATGGAAAAATTAAATGTGATGATTTTATCCTTAACAAGATCCTAACACCTAATGTTGTATCGGAGAGCAACATAGTGAATGAAAGTGTCGATTTAATTACATGCGATGACATAGAAACTGTTGAGGATAAATTAGTTATTGTAGAAGATATAGCTTCACCTGATATAAATGATGAGAAAAAAGATGATTCACCCAACTTAGAGAAGGTGATTGAAGATGATAAATTGTTAGTTGAAAATGAACAAACTAAATTAGATCCAATTAACAAGTCTGAAGCAAATGAAAAATCTTGTACGCAAGAGGATAAAAAACAAATCGACGATAAAGATCACGAATTAAAGGAAATCGCAAGTATTGTTAAACCTGACGTTGAAGTTAAAAATAGTTCTCATGATGATGTTGTATGTAATACTGTTAATGAAAAAAATAATACAGTTCAAATAAAAGCTCCGTTGGAAGCTAATGAAAGTAAATCTAGGGAGACGAAAGAAGTTGTACAATGTGACGCTAAAAATACAATTGAAGATATACAATGTGATTCTAAGAACACAATAGAAGCTAAGGAATGTGAATCTAAAAATACGGCAGAAGCTGTGGTAAATAAATCTCAGAATACGAAAGAAGATATGGATGGTGAATCTAAGAATCTGACAGAAGTTATAGATTATGAATCTAAGAATACAACAGATGTTATAGAAGATGAATCTAAGGACTTGACAAAATTGAAAGAATTTAAATCTAAAAATGCAACAGAATTTAAAGAAACTGAATCTAAAAATGCGACAGAAGTTACAGAATTTGAATCAAAGAATGCGATAGAAATTATAGAATGTGAATCTAAAAATGCGACAGAAGCTATAAGAAGTGAACCGTTAAATACATCAGACGAAATAAAAGTTGAACCTAACAAAACATCAGAAACAATTGAATGTAAATCAAAAAATAATACTGAAATTGTAAATGTAGCACAAAATAAAATGATTGAGGACGTCTCAAAGCCGTGTGGTATTTCAAAACACGGTCAAAATGACGAAGTAGTGTCGAAAAATCCCAATACATTAAAACTAGAATCTGAAATGAAAGTGAAAGACAGTAGTGCTGTATCTTTACAAACAGTTAAAACCCAAAAACAAGAAGAACAGACCAAAGATCATAATGATGCTTTAAAACTAAAAATTGATCTTGAAGTCAATGATTGTAACAAAACACAAGAAAAGCAAACCAAATGTCATATACCGACTAAGGAACAAACAGTCAATGAACAAAAAGATCATACTTTGATTGATTTAACAAAGCCTGATGTAGTTTTACCTAAAGAAAATAAGACTCTTACCATAAATGAAATAAAAACCACTAATCAACTTCAGAAGCCTGTGCAATTAGCTGTTAAAGCATATTCATCATCATCCGATATAAAAACCGATATTAAGAAAGAAACAGAAAAGTTTATAAGTGCACCACCCAAACAAATAAATAAGAAAAATTGCGCCGCAGTGCCTTTTGGGAAGTGGACTGAAGCGAATAGGCAAGAGTTTCTAAATAAAATAAAGGAAACTAAAGTAACTTCTAGTAATTCTAACACAAAACAATTGAAACAACCAAAAGATTTAAATAGGCGAGATGTTTTAAAGAAAATTGATAGTCAAAGACAAACAAACAATGTTGTTTTAAATAAAGGACAAGATGTCAATTCTAGTAATAAATCGAAAGTAACTACTGTGACTTTCAAAAATAAACCAAATATAGAACAGATAGCTAGTACTCCAATTGCTAATTTTACTCCTAAAGATGAGGCCAACAGTGTAAAAGACAGCCCTAAGTTACAAATTACATTTAATACAGCCCAAGATAAACTAGATATCATTGGAACCGTTAATAAGAAGTTAGGTCAAATGAAAGCAATAAACAATCAAGACCTGATTGATAGAACTATTGAAGGAATAATAAATAGAGCGCTTCCAGCAAAGCCTCAAGATGATAATAAGCAAGCTGTCGAAACGAATGCCAATACAAAAGAAAAGAATGCATATCCGATTACTTTAGATGATATTGAAAAGAAAATGAATGAGTTGCATGGAATCCCTTTTGTTGAGAGACCTCCACATGAACTACCAGCAACAAATCAAGAATCAAAATCGAATAATTCAGACAATAAAACGTCAAATGCTTCTAAAACAGATGTATTGTTAAGTCTCACTTCATTTACGAATAAACCTAAGCATAATGTTATTAAAGAATATGAAAGAACTAATATATCAGATGAAGAAATTATTGAGCATGTTCCGATTACGGGGGATATCAATTTACCTAGTAAGAGTAAGATAAGCAAAGAATTAGTAGATAGTACGATTTGTGATAGCGGTGCTAAAAAAGAACCAATAATCACAGAAAAAGATTTTGATAAATTTGCTAGGCGCAATTCTGTGACATATGAAAACTGTTTAACAGTTAATTTTGATAGAAAAGAACCTCATAATGTTATAAAAAGTATTATACCAAAAGACGTTCCAGCTAAAAAAATGTCTAGAAATGAACTTATGCTTGCTGAATCTAAAGCAAAATCGGTCAATAAGCAAAATATTGCACGCCAACATCATCATTCCAGCAAAATTCCTACAGCGGCTAAGATCTCCAACAATGATAATCATAACAAAAATTATCAGTCCAAGGTTCAAATAGCATACCAATCGGCTTTAACAGCTAAGCGACAACTCGAAGGTCCAATCACTATAATTGAAGACAAACCTGTAAAAGTAGTATTTATGGATACGAATTCAGATTTTGTTCCGGTTTTGAATGTCCAAGGTCAGGAACTGTCTCCATCAAAAATACAGGCAAATGACACTGAAAAATTCGTTCACAGCGCTTCGGAGTCTCTAGATTCTGATATTTTAGAGAGTTATGAGAATAAGCTACAAGAAGATGCTAAGTCCAAAAGTAAGCATCAAAGGAAACAAGTTTTAACACCAGTTGAAGCTCCTGAATTAGAGCTTATCGAACCGAGCGACTTAGGTGTGGAAACGTCCCCTAAGAAGAAACGTCGATTCGATGACAAAAATGACAAGAAAACAAAAACACTTGTGCCCAAGAAGTCATATCTTCTGAACCGAGATATGACGGAAGATAAACAAGTCAAAGGCAAAGATACAACTGATGTGGTTAATAGAACTGAGACGTTTATCCATTCTGATCCTATATCAGCAATAGACAACTTGGTTAAGGCTGCAGAGTTGCTAGAAACGCAATCCGAGAATAAAATTTTGAACAACACAGATGAAAGTAATAGTCAACATTCTACGCCTGTAAAAAGAGGTAGGGGCCGTCCAAGAAAGTACCCTCTTCCTGGATCAGATGCTAACGTTACTAAATCACCTAGCCCTCAGAAAAAGCCTCGACTGCAAGAAGAAAGGGTTTATAAAGAAAGTACAGAAACAGAAGACAGTAGTGACGACGAAATTATCAAAGAAAATTGGACTATGGGTAAGATAAACGAAAATATCGTATGCCCAATCTGTAGTAAATTGTTCCGTTCTGAAAATGTCGTATTTAAGCATGTGAAGCATTGTACTGGACCTTCACCAAACAGATCTGACTCCGATAAAAGAAGTTCTTCAAGGCTCAGACGTTCACAAGAATCGAAAAGATCATCAGCGGACAGCAAGTCTGATGATGATATGGATTTCGAAGAAGAAGTTACTACTCCACGGAAACGAAGATCAAGAGACTCTAGGACAGCTAGAGAAAAACACGACGATGTTATTAACAAACAATCAGAAAAAGAAAAGAATGTTGCGACTGAATCACATAAATCTATCAATAAACCGAAATTTAAAACAAATAATCTTGTGTGTGAACTGTGCGGAAAAAGCTTTAGACAGTTATCTTATTTGTTAAGTCATAAACTTCAGCATAAAAACGAAGAAGTAAAAACAACACATAACGAAGAAGTTAATAAAGACGTATTTTCATGTGAAGTATGCAAAAAAGAATTTAGAAAATTGCATCATTTGGTTCATCATCGGCCCATTCATAAGCTAAATGCAATGTCATCAAGATTGAGTAGAAAAAGCTCTTCAGAACATCGTGACCATAAAAGCGATAGAGATAATAAAACTCAAGCTCAAACGAAACAATTGGAGGAACATGGCGCAGGATTTCGTTGTGAACCATGTGATAAATCATTCAGAAAACTCCACCATCTTGTCGAACACAGAGAAACTCATGACGGTATCAATAAAAAATGTCCTCCACAGAGTGCAGTTGAAACTGTGAAGGCTCCGACGCATCAATGTGACATTTGTAAAAAATCGTTCAAAAAACTACAACATTTAATGGAACATAAAGATCAACATTTGGAGACGAGTTCGGAAAAGTCGGATGACAAAAGCGTTCAGAGTTCTTTGTCAACGCGCGATATTATTCATGAATGTTCTCTCTGCTATATGGTATTTCCTAATGAACATTCTTTGAACAAGCACACAATTATTTGTGCGAGAAAGAAGAAGCAATCGGCGGCTAAACCATCTGAGGATAAAGTTTCTCTCGATGATGACAACAAGGAAGATATAGAGGAAGAAGAGGATGTTAAAGCGGTCATTGATCCAGTGCCTGTACAGGAAATAAAGCCTAATATTGTTCATTCAAATGAAGGCGAAGAAATAAGTACACCGATCGTTAATAAACCTCCAGAAACTAACACGGTTATTGACGATTCGGACAGTAAAAGTGACGATATACCCTTAATAAAAGCAAAGGAATCTGAAAAGGTTATCAAAATAGATAAGCCCTCCAATGAGGTAGAAACCAAACGTTTAAATATGAATATAATTGAGACTATTGTAATACCCGATACACCGACACCCAAAAAGCGTCCAGCAACAAAAGAAAAAATAGGGAAAACAGTTACGAAGAAACAAAAAACTTTAAATACTACCATGCCGGTCATAGAAAGTAAATCAACAGTGGAATCGAATGATGACAATGACGACGATGAGGTTAGGTACATGTTGAATCCAAACTTCAAACCGGATGATACGGGTGAGGAGAAGTTTATGAAAGTGAGAGCTAAAAAGCGTAGTTCATTGCAAATAGAGAGACCTAATTCAAAAGATTTGGTAATTAGAAGAATCTCATTGCAACATCCGCCGAAAATACCGCGCCTTAAAGCCAAACCGGTGGAAACTAAAGTTCAGGCTGTCGTTAAGAGCACAAAAGCTCCAAATGCCGACCCAGTGCCTTCCACAGATTCGGATGATAGCGATATTAAATACTCTTTCCCGAAACCCGCAGTCGTTAAAAGTACGCCAAAGAAAGTAGAGAAGACCGGCAAAAAACTAGAGGAGAGACGAAAATCACTCAGTAGCATAGCTAAGAGGAAATCACTCGGAAAACTAAACCCAAATGCACCCGCAAAGAAAATCAGGAAACGCATTTTCGACGTGGAACACCGATGTGACTGCGGGCAACTGTTTAGTAGTGCCGCCTTATTATCTAGACACACGACTTTGGCACACACGCCTCCGCGGATACGACGTCGACGATCCCCTCTCCCCGAGACCAAACCACAAAAACCTGTGAACCAACCGAAACTCATTTCGAAACAAGCACAACCATCAGTCACACAACAGAAAACACAACCACAACAACAAAAACAAAAGCCGATAGCAAAGCAAAAGGCAACGACAACGAAACCCAACCAAACGTCAACACAACACAAACAGAACCCATCACAACAGAAACAGTCTTCTACACAACAAAAACAAACCACCACACAACAGAAATCCACAATCGCTCAGTCAGGCTCAACCTCACGAAGTAAATCTAGTAATGTTACCAATGCAAGTAAGAATTCAAAAGGAGTAGCAACAAGGAAATCGAGTGTAATAAAATAA
- Protein Sequence
- MDRLNQIRGEAERSKDFTLDTSSLPSEAYITANESSSKFFSLSEVDSTFSVSPTKDSNAAPANADTPISNSDLISNLSPIPKPNDLGSFKIGKQIEAANILSGGVNIFDDNSYDGDELVIDDNIQGDDGKSNAEQRPEDVSNVMSIDKADGVLEATEVSEAIGSKDTEVVLQIDGKNVDAIDIGNDLYLYRKPGEEELAAVQIVDDNQQQPCFKFLKVRENAEGNLEVYEEIEIEVPKELPTKNEDPKGCALKSQVKEDKISIDSENNKISENINKFPQNVIEHNDLELEPIKDLKEESKINFNGKMIKFSESRKSPVISTFTPMTYNSTPNKEGIPLTKIMVDQQLHPNRHSDNIKKTIEVHTESSKNKLVDTPSKNKEQIIDNLSENVENDIKENTSQELPHTPENNLVIVEEKECIDDIIKDNKLEENKIKESVDLDILPDLNVNNEIILKDLTEKNTTDEKCIVKVLTEKTKEDELINDGKIKCDDFILNKILTPNVVSESNIVNESVDLITCDDIETVEDKLVIVEDIASPDINDEKKDDSPNLEKVIEDDKLLVENEQTKLDPINKSEANEKSCTQEDKKQIDDKDHELKEIASIVKPDVEVKNSSHDDVVCNTVNEKNNTVQIKAPLEANESKSRETKEVVQCDAKNTIEDIQCDSKNTIEAKECESKNTAEAVVNKSQNTKEDMDGESKNLTEVIDYESKNTTDVIEDESKDLTKLKEFKSKNATEFKETESKNATEVTEFESKNAIEIIECESKNATEAIRSEPLNTSDEIKVEPNKTSETIECKSKNNTEIVNVAQNKMIEDVSKPCGISKHGQNDEVVSKNPNTLKLESEMKVKDSSAVSLQTVKTQKQEEQTKDHNDALKLKIDLEVNDCNKTQEKQTKCHIPTKEQTVNEQKDHTLIDLTKPDVVLPKENKTLTINEIKTTNQLQKPVQLAVKAYSSSSDIKTDIKKETEKFISAPPKQINKKNCAAVPFGKWTEANRQEFLNKIKETKVTSSNSNTKQLKQPKDLNRRDVLKKIDSQRQTNNVVLNKGQDVNSSNKSKVTTVTFKNKPNIEQIASTPIANFTPKDEANSVKDSPKLQITFNTAQDKLDIIGTVNKKLGQMKAINNQDLIDRTIEGIINRALPAKPQDDNKQAVETNANTKEKNAYPITLDDIEKKMNELHGIPFVERPPHELPATNQESKSNNSDNKTSNASKTDVLLSLTSFTNKPKHNVIKEYERTNISDEEIIEHVPITGDINLPSKSKISKELVDSTICDSGAKKEPIITEKDFDKFARRNSVTYENCLTVNFDRKEPHNVIKSIIPKDVPAKKMSRNELMLAESKAKSVNKQNIARQHHHSSKIPTAAKISNNDNHNKNYQSKVQIAYQSALTAKRQLEGPITIIEDKPVKVVFMDTNSDFVPVLNVQGQELSPSKIQANDTEKFVHSASESLDSDILESYENKLQEDAKSKSKHQRKQVLTPVEAPELELIEPSDLGVETSPKKKRRFDDKNDKKTKTLVPKKSYLLNRDMTEDKQVKGKDTTDVVNRTETFIHSDPISAIDNLVKAAELLETQSENKILNNTDESNSQHSTPVKRGRGRPRKYPLPGSDANVTKSPSPQKKPRLQEERVYKESTETEDSSDDEIIKENWTMGKINENIVCPICSKLFRSENVVFKHVKHCTGPSPNRSDSDKRSSSRLRRSQESKRSSADSKSDDDMDFEEEVTTPRKRRSRDSRTAREKHDDVINKQSEKEKNVATESHKSINKPKFKTNNLVCELCGKSFRQLSYLLSHKLQHKNEEVKTTHNEEVNKDVFSCEVCKKEFRKLHHLVHHRPIHKLNAMSSRLSRKSSSEHRDHKSDRDNKTQAQTKQLEEHGAGFRCEPCDKSFRKLHHLVEHRETHDGINKKCPPQSAVETVKAPTHQCDICKKSFKKLQHLMEHKDQHLETSSEKSDDKSVQSSLSTRDIIHECSLCYMVFPNEHSLNKHTIICARKKKQSAAKPSEDKVSLDDDNKEDIEEEEDVKAVIDPVPVQEIKPNIVHSNEGEEISTPIVNKPPETNTVIDDSDSKSDDIPLIKAKESEKVIKIDKPSNEVETKRLNMNIIETIVIPDTPTPKKRPATKEKIGKTVTKKQKTLNTTMPVIESKSTVESNDDNDDDEVRYMLNPNFKPDDTGEEKFMKVRAKKRSSLQIERPNSKDLVIRRISLQHPPKIPRLKAKPVETKVQAVVKSTKAPNADPVPSTDSDDSDIKYSFPKPAVVKSTPKKVEKTGKKLEERRKSLSSIAKRKSLGKLNPNAPAKKIRKRIFDVEHRCDCGQLFSSAALLSRHTTLAHTPPRIRRRRSPLPETKPQKPVNQPKLISKQAQPSVTQQKTQPQQQKQKPIAKQKATTTKPNQTSTQHKQNPSQQKQSSTQQKQTTTQQKSTIAQSGSTSRSKSSNVTNASKNSKGVATRKSSVIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -