Psen008510.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01001734.1:36040-42081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0095 0.67 10.6 0.2 2 23 202 223 201 223 0.96 2 11 8.5e-06 0.0006 20.2 4.3 1 23 229 252 229 252 0.96 3 11 0.00089 0.063 13.9 5.1 1 23 521 543 521 543 0.98 4 11 0.00062 0.044 14.4 1.0 2 23 549 571 548 571 0.97 5 11 5.2e-05 0.0036 17.8 1.5 1 23 579 601 579 601 0.98 6 11 0.083 5.9 7.7 5.4 2 23 605 626 604 626 0.97 7 11 1.3 88 4.0 0.9 2 23 640 662 639 662 0.94 8 11 0.084 5.9 7.7 7.3 1 23 668 690 668 690 0.95 9 11 0.0084 0.59 10.8 3.0 2 23 697 718 697 718 0.97 10 11 6.5e-06 0.00046 20.6 3.5 1 23 724 747 724 747 0.97 11 11 0.0076 0.53 10.9 1.2 1 23 751 774 751 774 0.96
Sequence Information
- Coding Sequence
- ATGGAATTGCAGACAAGAACTGTCTCTGAGCTGAGAACGTATTCGCGGTCTTTGAAATCCAGAAAAATTAGTGATGAATTACCCAAAGATGACAATTCTTACGAACCTTTAACTACTAAGGATGCTATAAGACTTCTTCTCGATGGTACTTTAAGGCTACGTGTATGCAGATATTGTTTAAATAAAACAGACTCTTTAAATGAACTAGACGAAATTCTAGTATTAGCGGGAAAAAACGGGCTCTACGAGGTCACTATAAAAGATATAATTGCGAGCTTCCATCCTTTTAAGGTAACATATGACTCCAATTTTCCAAACAAAATTTGCAAGAAATGTTTAGATAAAGCGCTGGCCTGTTATCTATTTTTGCAACAATGTGAGCAGTCCGAGAGGGCTCTCCGTAATTATTTTGAAGATATTAATGAGAAATTTAATAAATTGGATCCTTTGGAACCAGTCAAGAAGAGAGGGAAGAGAAAATTAAAACCAAACTATAATGTTTTGTATGCAGAACAATTAAATGTAATAGACTATGCGGAACCAATAATAAATATAGTTAATTTGAGTGGAGTACCTAAAGATAATGTTGAGGAAAATGAGCTGGAATGTTCCAAATGTTGGCAGGTTCTTCCAAACAAAACATCCCTTGTTAATCATGAGAATTCTCACCCGAAAACAATGTGGTACCATTGTAAAATATGTGGCAAATCATTTGTCAAATTTTACCAATTGAAGAAGCATAAACGTCTTGCACATAAAAATATTGATGAGAAACCAGAGGTTGGCTTCAATTGCCAACAGTGTGGCGTTACTAACACATTGTTGGACCAACATTTGCGACATGTGGAAAAACATAAGTTTAGGACTTGTTTGGATAATTTGATCAAGAGAAATACGTCGAACATGTGTTCCATTTGTTTTAATGAAGGGCCAGATATGATTGATTTAAAAGAAACTATGAATTTGCATGGTGGTTTGCCTGGGTTGACGGGAGAGAAGAGTATCCATAATATAGTGTCTACTGTATTTCCTGAGATCACCTTAGCTTACTACACAGGAACAAAAATTTGCAATCATTGTCTAAATAAATTAATGACTACATACATATTTATGTTAACGGTTAAGAATATTAGAAATAGATTGAACACATGCATAGGTTTAATGTTAACTGACTTAGAAAATATAGAAGGGGACAAAAATGTTATTATTGAAATAGCACAGGATGCAATATTACCAAAATTCGAAGTTGATTACACGGAATTAATGAAAGAAGACATGGAAATTGATGTTTTAGAAGATGAATTTAGAGTTTCAGTATCAGATAGTGAGTCAGTAAAAAGCGAATCTGTTAAGGATAAACTCGATTCTGAATCAGATCAGAGTGAAGTTACGTCAATTGATGGTTCAGAATACGATAATCCAGCTAAAAAGGCCACAAAAACATATGCTAAGAAAAATGTAGTCAACGGTTATCAATATTATGTCGATTGTGAATACTTAGATGATGTCTGCAGTGAATTCCTAACATTCAAGAAACGGAAGAAAAGTAAACCGTGTCTTTTCACCTGCCCTATCTGCCATAAACTCTTCATATCTGAATATTTCCTTAAAAAACATGTTCACAAACATTCACAAAGGATGGTTAAGTGTAAAGTTTGCGCAAAGAATTTCAAATCAAAGTTTTATCTATACGAACATGTGAAAATGGTGCATTTATTGAAAGCGGAAACGTTTTATGCTTGTAGTGACTGCGGTCGTAATTACACAGATATACAAAAGTTTAAAAAGCATATCAAACGACATATTAATATGCAGTGTCAGTTGTGTGATAAATATTTTAAATCTCAAATACATCATGATAGACATATGCTAAGACATGTAATGAAATTAACTACTGAAAGCCACGATGATGTATTAACTTGTAGCTTCTGCGAGAAAGCGTGTTTAAATGAAAACGAACTTTCGCTGCATGTAAATAAGGTTCATTTATTAATGAAGCCTTACTGTTGCGATATGTGTGACAAACAATTTTATACAGAGTATAATTTAAATTGTCACAAAAAATTACACAGTATGTTCACGAGGGAAGAATGTAGTTTCTGTGGCAAGGTGTTTAAATGCAGGAAGAATATAGTGGTCCATTTGCGAAAACATATTAATATAAAACCTCATTACTGTCCGGTTTGTTCAAAATCATTTTACTCAGAGTCGAGTATGAAACGTCACATGAAAATGTACCATGGGGGTAGATTTTGCTGTAGATTGTGTAGGACTGTAGTAGATAGTAACACTGATTTAAAAAATCATATTAAAGTAGCACACAGTTGTATGTAG
- Protein Sequence
- MELQTRTVSELRTYSRSLKSRKISDELPKDDNSYEPLTTKDAIRLLLDGTLRLRVCRYCLNKTDSLNELDEILVLAGKNGLYEVTIKDIIASFHPFKVTYDSNFPNKICKKCLDKALACYLFLQQCEQSERALRNYFEDINEKFNKLDPLEPVKKRGKRKLKPNYNVLYAEQLNVIDYAEPIINIVNLSGVPKDNVEENELECSKCWQVLPNKTSLVNHENSHPKTMWYHCKICGKSFVKFYQLKKHKRLAHKNIDEKPEVGFNCQQCGVTNTLLDQHLRHVEKHKFRTCLDNLIKRNTSNMCSICFNEGPDMIDLKETMNLHGGLPGLTGEKSIHNIVSTVFPEITLAYYTGTKICNHCLNKLMTTYIFMLTVKNIRNRLNTCIGLMLTDLENIEGDKNVIIEIAQDAILPKFEVDYTELMKEDMEIDVLEDEFRVSVSDSESVKSESVKDKLDSESDQSEVTSIDGSEYDNPAKKATKTYAKKNVVNGYQYYVDCEYLDDVCSEFLTFKKRKKSKPCLFTCPICHKLFISEYFLKKHVHKHSQRMVKCKVCAKNFKSKFYLYEHVKMVHLLKAETFYACSDCGRNYTDIQKFKKHIKRHINMQCQLCDKYFKSQIHHDRHMLRHVMKLTTESHDDVLTCSFCEKACLNENELSLHVNKVHLLMKPYCCDMCDKQFYTEYNLNCHKKLHSMFTREECSFCGKVFKCRKNIVVHLRKHINIKPHYCPVCSKSFYSESSMKRHMKMYHGGRFCCRLCRTVVDSNTDLKNHIKVAHSCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -