Psen006865.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01001009.1:132127-136830[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.044 3.1 8.5 0.6 2 23 286 308 285 308 0.94 2 11 7.4 5.2e+02 1.5 0.6 3 23 317 336 315 336 0.71 3 11 5.8 4.1e+02 1.9 0.6 1 9 340 348 340 363 0.77 4 11 0.0027 0.19 12.4 6.0 1 23 395 417 395 418 0.96 5 11 1.9e-07 1.3e-05 25.4 3.3 1 23 422 444 422 444 0.98 6 11 0.2 14 6.5 0.3 2 23 451 471 451 471 0.93 7 11 0.00044 0.031 14.8 1.6 1 21 477 497 477 502 0.94 8 11 4e-05 0.0028 18.1 1.4 3 23 513 534 511 534 0.95 9 11 0.00024 0.017 15.6 1.6 1 23 540 563 540 563 0.97 10 11 5.8e-05 0.0041 17.6 0.2 3 23 575 595 574 595 0.97 11 11 0.00015 0.011 16.3 1.2 2 23 602 624 601 624 0.95
Sequence Information
- Coding Sequence
- ATGTTGATAATCATTGTAAACATATTGATAATTCGCAATAATTGTAAAAACAATATTTATTGCCATAAAAATATGACTACAGAACTAGAATTAAGTTTAAAACAAATATGTTGTACATGTTTAAGTACTGATAGAAATTTATCTCAGCTGAGCAAAATAAACGATGGTGTAAATTATTTATATCATATTCTATCTTCTGACGCTGAAGCTTACAGCAATGGATTCTTACAAGATATTGTAAGTTTACATGTCTGTTGGGAGTGTGAATCTCTAATAAAAAAACAAATAAGGTTTAAAAAGCAAGCTTGTTTTGCCCAGAGACGATTATCATTGGTCAGTGAAGGATATATTAGGACACATAAAATTGAAAAATCACTGTCGAAACTTACAAGAGTCCACCAAAATAGTTATACTTATGTATTCAATTCAAATAAGTCATTAAATAATTTAATTGTATTTAGTCCTGACATATGTTTAAAAGGGGAAAATGCTGTACATACTAATTTTGATTCGGAAAACAGATTAGATGACCATAGTAGTATAGATGTAGAAGAATCTTTAGAAGACACAATTATGTCCTGTAAAAATGAAAATATAAGCAATACTTCTTGTACAGAGAATGATAAGGATTCAAAGTGTACAAAAATAAATTCCACTGTACATACAAATAATGAAATAAAAGAGTCTGATTTAGAAAATGAATCACTTATAAACCAAAACCTAAATACAGATCATGGCGGTACCAATAGTGAAGAAAAAAAAGAATACTTTAAAGAAGTAACAGAAAGTGAACATGCAATTGAATTACTTAGAGAGAAAAAGAAAATAGGTATGAAATATACTAAGTCATTTAATAGATGTGATATTTGTATTCAAGTATTTAAAACATCTAAAGTACTGGAAAATCATTACTACAAATTACACACAAATAAACCAGATTTTGAAAAATGTGGTAAATGTTTACAATATGTTAGAAAAACATATGTAAAAAAGCATCAGGCTGAACACACCAAATATTATAAATGTAATATGTGTGAAGAAGTTATGTTTAATAAACATGTTTTACCTACTCATTTTTATATGGAACACAGCATAAAAATAAAGAAGACACCTCCTATAAAAAATCCTGGCTCAAGACCAAGAAAAAGTAAGGTACTGCGAGACAAACCCACATCCCAGGGCTACCAATGCCCTGAATGTAATAAATATTTTGAAACTCACAACAGTCGCTACAAACACATACTGAAGCATCACAGAGAGGGCTACAGGTGTTCTGTTTGTGGAAAAGTATTTACCTACAAACATAACTTAAAGAAACATGAACAAATTCATGCGGGCATACCTCGTGAGCAATGCACGCAGTGCGGCAAATTCATCCGCTCGGATCTGATGTACGTGCACGTGCAAGTACACTCTGAGCGGGAGACCTTTGAGTGTACGCAGTGCGATAAACGCTTTGTGTCCTGGGCTACGTATGATCATCACTTGAAGTATTCGAAGGCGCATACGAACGGCAATAAAACATTCAATTTCTGGTGTGACACATGCGGTAAAGGATTCCGGAGTAAGGAAGACCTGAAAGACCATATCCATTACCAGCATTTGGGCAAAACAGAACACAAATGTCCCATATGTGATAAGCTATTATCGTCACGGCGAAGTATAAAGCGTCATATAAAGAGCGTTCATGAGGGTTTGGAAGAAGCTCGAAGCGATAAGATATGTCAAGTATGCGGAAAGGCTTTCCGGTTCCTAAGGAGTCTCGAAGAGCATCAATTAATACACAGCGGTGAACGCCCTCTATCGTGCGAAATATGTAGTCAAACATTTAGACAAAGAGCCTCACTTTATACTCACAAAAAAAGAGTACATAAGATATTTCCTCCGACAAAAACGCTAGTGGCTATGGATGATAATGATTGA
- Protein Sequence
- MLIIIVNILIIRNNCKNNIYCHKNMTTELELSLKQICCTCLSTDRNLSQLSKINDGVNYLYHILSSDAEAYSNGFLQDIVSLHVCWECESLIKKQIRFKKQACFAQRRLSLVSEGYIRTHKIEKSLSKLTRVHQNSYTYVFNSNKSLNNLIVFSPDICLKGENAVHTNFDSENRLDDHSSIDVEESLEDTIMSCKNENISNTSCTENDKDSKCTKINSTVHTNNEIKESDLENESLINQNLNTDHGGTNSEEKKEYFKEVTESEHAIELLREKKKIGMKYTKSFNRCDICIQVFKTSKVLENHYYKLHTNKPDFEKCGKCLQYVRKTYVKKHQAEHTKYYKCNMCEEVMFNKHVLPTHFYMEHSIKIKKTPPIKNPGSRPRKSKVLRDKPTSQGYQCPECNKYFETHNSRYKHILKHHREGYRCSVCGKVFTYKHNLKKHEQIHAGIPREQCTQCGKFIRSDLMYVHVQVHSERETFECTQCDKRFVSWATYDHHLKYSKAHTNGNKTFNFWCDTCGKGFRSKEDLKDHIHYQHLGKTEHKCPICDKLLSSRRSIKRHIKSVHEGLEEARSDKICQVCGKAFRFLRSLEEHQLIHSGERPLSCEICSQTFRQRASLYTHKKRVHKIFPPTKTLVAMDDND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -