Psen014522.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- ZNF219
- Assembly
- GCA_001586405.1
- Location
- LQNK01002653.1:18032-31575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.001 0.074 13.6 0.4 1 23 236 258 236 258 0.98 2 11 0.027 1.9 9.2 0.8 2 23 266 287 265 287 0.97 3 11 0.89 63 4.4 2.8 1 23 291 314 291 314 0.89 4 11 0.0081 0.57 10.9 3.0 1 23 321 343 321 343 0.99 5 11 0.00011 0.0077 16.7 3.8 1 23 349 371 349 371 0.98 6 11 0.00014 0.01 16.4 6.9 1 23 377 400 377 400 0.97 7 11 0.0023 0.16 12.6 0.7 1 20 405 424 405 430 0.93 8 11 0.00031 0.022 15.3 0.5 1 23 438 461 438 461 0.97 9 11 0.0084 0.6 10.8 1.9 5 23 471 490 468 490 0.92 10 11 3e-08 2.1e-06 27.9 0.1 2 23 499 520 498 520 0.98 11 11 0.007 0.49 11.1 0.1 5 22 529 546 526 548 0.87
Sequence Information
- Coding Sequence
- ATGGAAGATAAATCTATTCATAAAGTTTGTCGCACATGTTTATCCACACAGCACAAATTATTAAAACCAATAACAAAAGAGGAATTATTTATATACAACAGAATATTATTGAAGGACTGTATAGAAAAAGAAATGTACTTATGTATATTCTGTAGATGTATCTTTAGAAAAATATACAATTTTATCAAACAGTGTGAGATTGCTGAGGAACAATTGAATGGTGTTAATGAGGCTGATACTACAAAAATGAAACTATCATACAACTTAACAACTTCTCCACTAGAAATTAATTTCTACGTACAGAATGAAATGACAGTAAAAGAAGAAGAAATGTATGAGGATGATATACCTTTGATTCTACTCAGTAACCATGATAGTGATTGTGGGGACATGGATAGTGAATTAAAAACTGACGACCTAGATATAAACACAGATATTAAAGAAGAGGTGGATAATGGACAAGATGGCTTACTTCTTGATGAAAAATTTGATTTAGCATCAAATGAAGCAAGTAAAAAAGATAAATTTGACAAAAAATTATACAAAAACAAGAAGAAAAACAAAAAGAAAGATACAGTACCCAACGGATTTTCGTCGAGAATGGTCAGAGAGACTGATGAGTATACGGTTATAAAACTGACTAAGGAACAGGTTCTAGAAGAAATGGAAGCCAATCGTAAATCGGAAAAATATAGTTTAGCCCCGTATAAATGTGAAAAATGTGTTAAAGGTTTCAATTTCGAGGATGTGTTGCAGGGCCATATGGAGAAACATTCGCCGAAAAATGGCGCATTGAAATGTGAACTATGCACTCAATATTGCCCGAGCGCTATTTCATTGCGAGGTCATATAAAATCACATACTACTAAGTACAAATGTAAAATATGTAACATAGTGCGTCATTCACGGCAACATATTCTAGAACATTATTCGTTGGAACATACAGATACGACCCCCGATTATAAGTGTAAGGAGTGCGAGTTTACTACTAAGAAACGTACAGTAATGCAGAGGCACGTGAAAATGCATGCAACAAGTGAAAAATATACTTGTCATAAGTGCGGCAGATCTTTTAAAAGTCGAGAAATATTAAGGGTTCATACAAGCCGTCACGACGATAAAAACCGTTACCACTGCGATCATTGTAACCGCACCTTTATATACAAATCGGTGTTACACAAACATATACGCTCGGTACATATCGATAAGGACTATTATTGTGTGGAGTGCGACGCGATGTTCACGTCTATGGAGGCTCTGAAACAACATTTGTACAAAACAAAAAAACATAGCGACCCATCACAATACAAATACGAGTGTCCACAATGCGACGAGAAATTCCTAACAAAATCGACTCTAGGCACTCATCAAACGACTGTACACAACGCGCCCAAGTCCTCCCACTGCATCTACTGTAGCCGAGCGTACAGTAGCAGTGAGTCTCTGAGACTGCATGTGAGGAGAACCCACTCGAGCACTGATAAAGTGTCGGTGAAGTGTCCCGTGTGCGGCAAAGTGTTTAGTCGTAAAGGCGTACTAAAGGTGCATATGCGAGTGCACACAGGTGAGAGACCATACACATGCGACTGTGGTATATCTTTCACGCAACTCGCGTCTCTTAAGGCGCATGAAGCTGCTAAACATAGGAAATAA
- Protein Sequence
- MEDKSIHKVCRTCLSTQHKLLKPITKEELFIYNRILLKDCIEKEMYLCIFCRCIFRKIYNFIKQCEIAEEQLNGVNEADTTKMKLSYNLTTSPLEINFYVQNEMTVKEEEMYEDDIPLILLSNHDSDCGDMDSELKTDDLDINTDIKEEVDNGQDGLLLDEKFDLASNEASKKDKFDKKLYKNKKKNKKKDTVPNGFSSRMVRETDEYTVIKLTKEQVLEEMEANRKSEKYSLAPYKCEKCVKGFNFEDVLQGHMEKHSPKNGALKCELCTQYCPSAISLRGHIKSHTTKYKCKICNIVRHSRQHILEHYSLEHTDTTPDYKCKECEFTTKKRTVMQRHVKMHATSEKYTCHKCGRSFKSREILRVHTSRHDDKNRYHCDHCNRTFIYKSVLHKHIRSVHIDKDYYCVECDAMFTSMEALKQHLYKTKKHSDPSQYKYECPQCDEKFLTKSTLGTHQTTVHNAPKSSHCIYCSRAYSSSESLRLHVRRTHSSTDKVSVKCPVCGKVFSRKGVLKVHMRVHTGERPYTCDCGISFTQLASLKAHEAAKHRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -