Psen018386.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000237.1:143071-152357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-06 0.00035 20.9 0.5 1 23 243 265 243 265 0.98 2 13 0.019 1.4 9.7 2.1 1 23 273 296 273 296 0.93 3 13 0.77 54 4.6 0.4 1 23 300 323 300 323 0.92 4 13 0.0001 0.0073 16.8 3.0 1 23 395 417 395 417 0.99 5 13 0.1 7.4 7.3 0.4 1 23 425 448 425 448 0.97 6 13 0.068 4.8 7.9 3.2 1 23 452 474 452 474 0.98 7 13 0.00064 0.045 14.3 2.7 1 23 479 502 479 502 0.98 8 13 0.17 12 6.7 2.6 1 23 506 529 506 529 0.89 9 13 0.23 16 6.3 0.0 2 19 549 566 548 569 0.92 10 13 0.051 3.6 8.3 0.6 2 23 612 634 611 634 0.96 11 13 2.5e-06 0.00017 21.9 2.6 1 23 643 665 643 665 0.98 12 13 0.00029 0.02 15.4 0.7 1 23 671 693 671 693 0.96 13 13 3.1e-06 0.00022 21.6 2.2 1 23 699 722 699 722 0.98
Sequence Information
- Coding Sequence
- ATGTTTGATCTAAAAGCATGTGTAGTGTGCTTAAGTACTGCTGTAAAGTTTAACAACATGGATAGTAGTCTTCTGAGACGTGAATACAATCTTATATCCGGGCTAAAGACACAAAACGGAAATGGTTTGCCGGTATATATGTGTGTTGAATGTACAGCATATGTGAAGCGTTTTATAAAGTTTCGGAATAAATGCCAAAGAGCATATTACACATTGCTTCAGGTATTGGATACGAATAAACAGATAACTGAACCATTACTCAATGAACTAAACAAAAAAAGGTTAAAAGTAAATCCAACATTATCATACTTGGACATTAAAAGCCCAAATGTGAAGTGTGAAAGTGTAAAATTTAAATGGGTGAAGGAGAGTCGTGTTCCCATTGAACCAAGTAACATACAGATTTTACACTGTAGTACCATCTCAAATGATGTTGAATTTGAAGTGCCTCCCAAAAGAGCTAAAATAGACATTGACGTAAACTGTAATTCTGAAAATGTGGAATCAAAAGTGGATACAGAGGCTGTGGAGAAGGATGAATTGCATTCTGATGACTATTTTGACACAAATGAAATAGACAACAATGATATTACAAATGGTATTGAGGATAATGAAGATGATGTAGATGGGTCGAACTTGGATGTGGAATATGCCAGTGTGGTCCCCATCTCTATGAAGGAGGCAAAAGCAGCGGTTGATGTGTATAAGATGTTTTCACATGGCAAGTTTAGTTGTGAAGTTTGCGGCAGGTCTTATTATACTGAGGCTCGGTTAAAAATACACATGAGAATGCATGATACTCATACAAGTGGAAAGTTCTTCTGTGAATTATGTAGTTACTATTATAAGACGGAGTTCCAACTAAAAACACACATATCAGGAAAACACATGTACAAATACATATGTAGAAAATGTCCTGAAGTTAGCTTTGATCGTACTTCAGCAAAACAGCACTACATATGGACGCATTTACAAAAAGGTGCTAAAAAACATTCCAACTGGTATGAAACTAAGCCATCTTGGGTCAAAGGCAAGAAACAAAAAAGTGTGCTATCTCTACGACCTGTACGTAAGACGAGAAAGTTGCCTGCGGACTTCCCTGTATATTCCCCGATCAGTCAAGAGGAACAGTACGAGATTGTACAACAAAGGCGGCTTTCAAAGAATTACTTGGATTCAGCGTTCAAGTGTGATCAATGCTTTAGAGGCTTCCGGGAGTCGAGCACTTATGAGAACCACATGAAGAAACATGATCCGAACATATCAGGCTCATATCAGTGCGATGCGTGTAAAGTGTTTGTGGTGAACGCGAGGCAAATGTACAAACACATGACCATGAGCCATCTCTTCAAGTACTCTTGTCAGATCTGCTCATATACCTGCTTTAGTCGTGGTCAAGCAAAACTTCATTATAGATGGCATAAAAATGTAACATACTCCTGTCCTCACTGTAAGAAAGAATTTATGAAAGCATCAACGCGTTTAACTCATATACGAATAAAGCATCCATCTACGTTCATATGTACGTTGTGCGGTCACAGCTTTGTGAGTGAAACAGGACTATATTGCCATAAGAAAATTGTCCATACTAAGGAGGAGATAGAAGCGAGTGCGCAAGAGGGCGTGGAGCCAAACAGCGCTCTGTACTGCGCCGAGTGCGGGCTGCAGTTCGCCAACGAGGCCGCGTTCGCCACGCACTTTGGCAGCTCTAACAAACATGCTGATACTAACCTATCAATAAAACCAGTGAAAGCTAAGAACGAGAGGAAAGCCCGCGGGCGGCCGAGGCGAGCCAACTCCAATATACTCAACAACGGCATGGCCACGGCGAGCACTTGCGAAATTTGCAAGAAGTTCCTATCGAACGACGTGCAAGCGCGCAAGCACTACGAGACCGAGCACCCCGGCGCCGACTACCTCAAGCGCTACATGTGCGACATCTGCGGACACACCACAAGGCAACACGCAAACCTGATGGTCCACATGCGTACACACACGTTAGAGAAGCCATACGCGTGCCCGCACTGCGAGAGGCGGTTCAGTATGCCGAGTAATCGAGACCGCCATCTTGTGGTGCATACAGGCGAAAAACGTTTCCAATGCGAACACTGCAACCGCCGCTTCACACAAAGTAGTGCGGTAAAACTGCACATACAAACCGTTCACCTCAAAATACCCTACGCTCCCTGGGACAAGAAGAATAGGAAGAGAAAGAAAGACCTGGAAGCCACTACGTCGGTGTCTCTACAGAAACCGGACACTCAAGGGGAATATATTAATGCGTATATGTTTAATTTATAA
- Protein Sequence
- MFDLKACVVCLSTAVKFNNMDSSLLRREYNLISGLKTQNGNGLPVYMCVECTAYVKRFIKFRNKCQRAYYTLLQVLDTNKQITEPLLNELNKKRLKVNPTLSYLDIKSPNVKCESVKFKWVKESRVPIEPSNIQILHCSTISNDVEFEVPPKRAKIDIDVNCNSENVESKVDTEAVEKDELHSDDYFDTNEIDNNDITNGIEDNEDDVDGSNLDVEYASVVPISMKEAKAAVDVYKMFSHGKFSCEVCGRSYYTEARLKIHMRMHDTHTSGKFFCELCSYYYKTEFQLKTHISGKHMYKYICRKCPEVSFDRTSAKQHYIWTHLQKGAKKHSNWYETKPSWVKGKKQKSVLSLRPVRKTRKLPADFPVYSPISQEEQYEIVQQRRLSKNYLDSAFKCDQCFRGFRESSTYENHMKKHDPNISGSYQCDACKVFVVNARQMYKHMTMSHLFKYSCQICSYTCFSRGQAKLHYRWHKNVTYSCPHCKKEFMKASTRLTHIRIKHPSTFICTLCGHSFVSETGLYCHKKIVHTKEEIEASAQEGVEPNSALYCAECGLQFANEAAFATHFGSSNKHADTNLSIKPVKAKNERKARGRPRRANSNILNNGMATASTCEICKKFLSNDVQARKHYETEHPGADYLKRYMCDICGHTTRQHANLMVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRFQCEHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRKKDLEATTSVSLQKPDTQGEYINAYMFNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357970;
- 90% Identity
- -
- 80% Identity
- -