Psen017364.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000490.1:172323-177073[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00092 0.065 13.8 0.5 1 21 161 181 161 182 0.96 2 19 0.0025 0.18 12.4 0.1 3 23 217 238 215 238 0.95 3 19 0.51 36 5.2 0.3 5 23 247 265 244 265 0.92 4 19 0.071 5 7.9 5.1 2 21 269 288 268 289 0.92 5 19 0.1 7.1 7.4 0.3 2 23 323 345 322 345 0.82 6 19 7 4.9e+02 1.6 0.5 2 23 352 372 351 372 0.79 7 19 0.0024 0.17 12.5 1.4 1 23 378 400 378 400 0.98 8 19 0.014 0.96 10.1 1.8 1 23 406 429 406 429 0.96 9 19 0.0022 0.15 12.7 1.1 1 23 438 461 438 461 0.94 10 19 0.00051 0.036 14.6 1.5 2 21 627 646 626 647 0.93 11 19 0.32 22 5.8 0.1 3 23 654 675 653 675 0.95 12 19 0.032 2.3 9.0 1.7 3 23 682 703 681 703 0.98 13 19 2.4e-06 0.00017 21.9 2.3 1 23 708 730 708 730 0.98 14 19 0.62 44 4.9 1.3 2 21 734 753 734 754 0.91 15 19 9.5e-05 0.0067 16.9 0.9 1 23 780 803 780 803 0.94 16 19 0.00028 0.02 15.4 0.5 1 23 809 831 809 831 0.95 17 19 0.083 5.9 7.7 0.1 1 23 837 859 837 859 0.97 18 19 0.0024 0.17 12.5 0.6 1 23 865 888 865 888 0.94 19 19 0.00019 0.013 16.0 1.9 2 23 895 917 894 917 0.96
Sequence Information
- Coding Sequence
- ATGACCAGACAAGTGGACATAAAAGCGATAGTATCACATATAATTAAAGGAGATGGTTTGGACAAGTGTCGCATTTGCATGGGAAGTACGAAAGAAGGCAAAGTTTTCTTGGGAGATACAGTTATGAAGGATGAAGGAAAAGCAGTTAGTTTGGCCGAAGTGCTTGAAAACGTTACGGGGATTCAGATGCAGACACAAGATGACCTGCCTACAGGAATCTGTTCGGCGTGCTCTGTATCCGCCTTGAACGCAGCATCATTCCGCAATTTATGTCAGAAGGCAAACACTCAATGGGACTTTCTAACAAACCTATTAAACAGCCTTCCTACCCAATCAGACAAACATAACACTGCATTATTTGCTCTAATAAATAACAACGAAATGACTATAATTGATGATTTTGTTGGTACCGTCTCTAAAAACACAGCTGCTAAGATGTTATCTTCACATCTTAATAAGGAAAATACTGAACGAAAGTCTTATAAGTGTCCAGAATGTTTTAACACATTTAGATACCCAAATCAGTTATACATTCATCTAAAGGAATCTACGGATATGAAAAGAGCATGCTATGTTTGCGGAGAAATCATGATGAGGGATGCATTAGTTTCACATTTAAGCAGGGATCATAATAAAGATGCTATTGATTGCAAAAAATGTCCAGCAATTTTTTCCACAGCGGAACAATATATTGAACATCAGGCTAAATTTCATTTTTCAACTAGTAATATATGTATAGATTGTGGACAGTCATTTCAAACAGTAAATGCACAACATGCTCATATGTCAATACATACACCAAAATCCTGTCCCAGATGTGATAAGATTTTCAAGAACCAAAAGTGTTATTTACATCACTTCAAAAACTGCTGTACGGACAAAAAGGATTTGAAGAACAAGGAACCAATTATACACAAAAAAGACAAAATTAAAGTTGGCTTACGGGGCAGCGTCAATAAGAAATGCATTTGCGATTATTGTGGCAAGGAATTTGCTGGACGAAAAATTATATCTGCACATATACAAATAGTTCATATGAAAAACACACATCAACCGTGTACTCAGTGTGGGAAGTTGTTAGCTGCCGCTCATATGTCAGGACATATGAAGTCTCATAACTTTAACCATCCATTTAAATGTCTATTATGTGGTATGGTGTTCAAGTCCCATCTTGGTTATGTACAGCACCTACGTTTGCATTCAGGGGAAAGGCCATATGCTTGTAGTCAATGTTATGAAACGTTTTCTACATCGTCAAGGCGTTCAGAGCATGTACGGAAGACTCATAAAAAGAACGAAATTGAATTAAAACATGCTTGCACATATTGTCCTGCTAAATTCCGTCTTCCTTACCGATTGAGACGTCATTTGTTAAACGTGCATTCGAATGAAAGTGACCTCCCGGAGATGAAATATAAGTGTGGGAGTGACACGACTGGAGAGATCCGCTATATTATAAGCGACAAAAAGTTGGGTGAACTCGAGAGTATAAGCCTCATTCTCGTGCTGCCAGCGTCAAATAAAATTAATAAAGTGTTTTCTTTTTTGCAGGTTAGCGATGAAGAGTTGTGTCCAAGTGGAATATGTGCAGCGTGCATGAATCTGGCCAAAGCAGCATATGAGTTCAGAATGTTAGTCAGAACTTCCCAAAACTTATGGCAAAACTGCTTCAACTCCGTTGATATTTTAATGGACAAAAACAAATGTTCCAAATCATTGTACGCCATATTAAATGACAATTTGTCGTTACAAGCCGTGAGAAACTTCGATGGAAATGCAAAAAATTTCGTCAACCATTTCCTGAATCAGCCCAAAAGGGAAAGGCAAAATGAAAGGCAGGATAAAAAGCAACGAATTTCAAGGAATGGCCCGTCTTGTGCCTGCAGTGATTGTGGGAAAGAATTCCACAGCCCATATTACTTAAATCTGCACTTAAAGAACAGCAGTGAAAAGGAAGCGTGTTGGTTATGCGCAAATATGTTTAACAGAGGAGAAGAAATGAAAAATCATATGGCCACCATGCATAAAGTTGAGATGTTATTGTGTAATGAGTGTCCAATGCTCCTTAAAAGTGCGATAGACTTGAAGAGGCATCAGAAGAAGTGTCACACACCAAGTGCTTATACTTGTACTCATTGTGGTAGGACGTTTAGTAGGCAGGCGTCGTTTGAACTGCACGCTCAAATGCATATGGTTAGGACGTGTCGCGCGTGCGGTGCTCAGTTCACGAACCGTGGGTGTTATCGAGTTCATAGGTCGAAGTGTGAACCTGACGCGAAACCAGACTTGAAAACGATACCTCGAAACAAACGGTCTAACGTACGCGATCCAGCTACGTTTATCTGTGACTACTGTAATAAAACTTACCACTCACGACCCCAGTTACAAAACCATATTATTTGGATTCATATGGATATACGACCTCATCAGTGTCAGTGGTGCGGGAAACGGTTTTACACGCCGGCTCGTTTAGCGGAACATACAGTTGTGCATACGCGGGAACGCAATTTCAGTTGTGATATTTGTGGCGCGAAATTGGTTTCCAAAATGGCCGCCGTGTATCATAGGCGAAGGCACACCGGTGAAAAGCCATACGAATGTGAAGATTGTGGAGAGAAATTTATATCGTCGTCTCGTAGGTCTGAACACGCGAAACGAAGACACGATAAAGGGACGCGTCTGCAATGTATGTTATGTTCAGCTAGTTTTGTGCGCAGTCATGAACTCAAGAAGCATATAAATAAGTCGCATTGGCTGGATGATGGTTTGAAAAAGGAAAAAGAATTGTTTGAAATGGAGAAATAG
- Protein Sequence
- MTRQVDIKAIVSHIIKGDGLDKCRICMGSTKEGKVFLGDTVMKDEGKAVSLAEVLENVTGIQMQTQDDLPTGICSACSVSALNAASFRNLCQKANTQWDFLTNLLNSLPTQSDKHNTALFALINNNEMTIIDDFVGTVSKNTAAKMLSSHLNKENTERKSYKCPECFNTFRYPNQLYIHLKESTDMKRACYVCGEIMMRDALVSHLSRDHNKDAIDCKKCPAIFSTAEQYIEHQAKFHFSTSNICIDCGQSFQTVNAQHAHMSIHTPKSCPRCDKIFKNQKCYLHHFKNCCTDKKDLKNKEPIIHKKDKIKVGLRGSVNKKCICDYCGKEFAGRKIISAHIQIVHMKNTHQPCTQCGKLLAAAHMSGHMKSHNFNHPFKCLLCGMVFKSHLGYVQHLRLHSGERPYACSQCYETFSTSSRRSEHVRKTHKKNEIELKHACTYCPAKFRLPYRLRRHLLNVHSNESDLPEMKYKCGSDTTGEIRYIISDKKLGELESISLILVLPASNKINKVFSFLQVSDEELCPSGICAACMNLAKAAYEFRMLVRTSQNLWQNCFNSVDILMDKNKCSKSLYAILNDNLSLQAVRNFDGNAKNFVNHFLNQPKRERQNERQDKKQRISRNGPSCACSDCGKEFHSPYYLNLHLKNSSEKEACWLCANMFNRGEEMKNHMATMHKVEMLLCNECPMLLKSAIDLKRHQKKCHTPSAYTCTHCGRTFSRQASFELHAQMHMVRTCRACGAQFTNRGCYRVHRSKCEPDAKPDLKTIPRNKRSNVRDPATFICDYCNKTYHSRPQLQNHIIWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRERNFSCDICGAKLVSKMAAVYHRRRHTGEKPYECEDCGEKFISSSRRSEHAKRRHDKGTRLQCMLCSASFVRSHELKKHINKSHWLDDGLKKEKELFEMEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -