Psen003563.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- PRDM13
- Assembly
- GCA_001586405.1
- Location
- LQNK01000853.1:15934-24134[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 1.3e+02 3.4 4.2 1 23 243 265 243 266 0.94 2 11 0.0013 0.091 13.4 0.5 1 23 272 294 272 294 0.98 3 11 8.7 6.2e+02 1.3 3.7 1 23 298 321 298 321 0.87 4 11 2e-05 0.0014 19.0 3.2 1 23 328 351 328 351 0.96 5 11 0.00046 0.032 14.8 3.7 3 23 361 382 360 382 0.95 6 11 2.9e-05 0.0021 18.5 0.1 2 23 396 417 396 417 0.97 7 11 7.5e-07 5.3e-05 23.5 2.1 1 22 423 444 423 448 0.94 8 11 3.1e-05 0.0022 18.5 0.2 2 23 457 479 456 479 0.93 9 11 2.8e-06 0.0002 21.7 1.7 1 23 485 508 485 508 0.96 10 11 5.4e-05 0.0038 17.7 0.0 1 23 517 539 517 539 0.98 11 11 4.8e-05 0.0034 17.8 0.1 2 23 546 568 545 568 0.95
Sequence Information
- Coding Sequence
- ATGGATGCAATTAATTCGAGATGTTTGCAGTGTTGTATTGCATGTTGTCGGGACGATGCTACTCAAATTTATAATATTCAAAACAAAGATTTGAAGACAATTCTTCAGGGTAATAATCTAAGATTGTGTTTTATATGCAAGAGATTCGCCCAGAATGTGGAATTATTTATAGAGAGTGTTCAAAAAAACCAAAAATTACTTCATAACCTATCGGTTGAATCAAGCATAAAAATTATAAACTTTGAGGAAAGACCTCTGAAAAATTTACAGCCTGTAATCATGGATACTGTTGAAATTGGTGAAAGTGTGCTTGAGGATGGACCTTTTCCAGTTCTAGTTACCTGTATTGGGCAACACAGGGCCGAAAAATGCCAAGAAGATAAAGATTTAAGTATAGATAGTTCACATGGTGAAATAGAGATTGAGGAGCCTCTTATTAAATCAGAACCAGTAGAATTAAAATCTGATAGTAGTGAGGTGGATCGCCCTGACCCAATAGTTGAGACGGGGGCATTGAATTCACTCAAAGTGTTCATTCCATGTGGTTCATTAAAAAAGCCGGAGCCGACGCAAGTAAAAAGGTCTTTAAGAGCTTTAAAGACAGTTAAAAAGGAAATACAAACAATTAAAAATGAAGAATCGATTATTAGAATAAAAATATCCAAGAAAGAAATCATGGACGAAAGGGAAGAGATGGCTAAGGAAGAGTTTTATAATAAATCTACTTTTAAATGTAAACCTTGCATTAAAGGTTTTATGTTTAAAAATATGTACACAAATCACATGAAATTACATCATGAGTCGAGCGGTAAATATGAATGCGAAATATGCACACAGAGGTTCCCAACGACAGCCAAATTTTTGGTGCACTGGAAATATCATGAAATTCGCTACAGATGCACAATATGCTACTTCACTAGGAAATGCAGAAAAAGTCTCAGAGATCACTACGAAGCGGCACACTCGTTGAAAACAGAAGTGTACAAGTGTAAGGATTGTGACAAGCAGTTTCAGAGGAGGGTATCTCTGAAAAATCATAGATACTCCATGCACAACTCAAGGAACATGGCACCGGCGGATTGCAAATTTTGTAATAAACCTTATAAAAGTCATAATTCATTAAGGAAACACATGTTGCAAATGCACTATAAAGAAGTGGCCAACGACAAGCCACGGCTTCAGAACACGTGCCCTATATGCGGGAAATATTCAAACTCGCCGGCCAATCTGAGGGAGCACATTGTGACTCACAGTCAAGGGAAGAACTTCTATTGTGTCGAATGTAATAAAAGCTTCAAAACCAAGTCGACACTAAGACATCACTTGAGGCGAGCTGCAGCGCACGCACAGAGCCAAAATTTCACGCTAGAGTGCCACGACTGCGGCCAGACGTTTGGCACCAAGGACGAAATAGAACGTCATATAGTCATCGAACACCTCAACATTAGGCCGTTCCCGTGCGATCAGTGTGATAAGACGTATACGCAGCAGCGCACCCTCAAGAAACACAAGAAGATCGCCCACGAAGGGTTCGTCTATCCGAAGATTTTCATCTGCCTTGTGTGTGGCAGGGCTTTTAACAAAGCACCAGTGCTCGCAGTGCACATGCGTACACACACAGGTGAGAGGCCGCTGAATTGTTTAGAATGTCCCGCCACGTTCAGGCAAGCAGGTGCGCTGCAGAAACATGTGAGAATGATTCACCGCAACCTCACAGCTGATGGGAGGCCTAAGGTGCCCAAGAAAGTGAAGATGGAGAAAGACACGGCTTAA
- Protein Sequence
- MDAINSRCLQCCIACCRDDATQIYNIQNKDLKTILQGNNLRLCFICKRFAQNVELFIESVQKNQKLLHNLSVESSIKIINFEERPLKNLQPVIMDTVEIGESVLEDGPFPVLVTCIGQHRAEKCQEDKDLSIDSSHGEIEIEEPLIKSEPVELKSDSSEVDRPDPIVETGALNSLKVFIPCGSLKKPEPTQVKRSLRALKTVKKEIQTIKNEESIIRIKISKKEIMDEREEMAKEEFYNKSTFKCKPCIKGFMFKNMYTNHMKLHHESSGKYECEICTQRFPTTAKFLVHWKYHEIRYRCTICYFTRKCRKSLRDHYEAAHSLKTEVYKCKDCDKQFQRRVSLKNHRYSMHNSRNMAPADCKFCNKPYKSHNSLRKHMLQMHYKEVANDKPRLQNTCPICGKYSNSPANLREHIVTHSQGKNFYCVECNKSFKTKSTLRHHLRRAAAHAQSQNFTLECHDCGQTFGTKDEIERHIVIEHLNIRPFPCDQCDKTYTQQRTLKKHKKIAHEGFVYPKIFICLVCGRAFNKAPVLAVHMRTHTGERPLNCLECPATFRQAGALQKHVRMIHRNLTADGRPKVPKKVKMEKDTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -