Psen008355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phoebis sennae
Gene Symbol
L
Assembly
GCA_001586405.1
Location
LQNK01000439.1:276725-281784[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.44 31 5.4 5.8 1 23 3 25 3 25 0.97
2 16 5.9e-06 0.00042 20.7 4.1 1 23 31 53 31 53 0.99
3 16 1.8e-05 0.0013 19.2 0.1 1 23 59 81 59 81 0.98
4 16 2.6e-06 0.00018 21.8 0.1 2 23 97 119 96 119 0.96
5 16 4.4 3.1e+02 2.2 0.2 9 23 146 161 142 161 0.93
6 16 0.21 15 6.4 0.0 3 23 216 236 215 236 0.97
7 16 0.034 2.4 8.9 0.1 2 23 250 271 249 271 0.91
8 16 5.4e-06 0.00038 20.8 1.5 1 23 279 302 279 302 0.94
9 16 0.019 1.4 9.7 0.1 1 23 307 330 307 330 0.92
10 16 0.00056 0.04 14.5 0.4 1 23 390 414 390 415 0.96
11 16 0.00014 0.0098 16.4 0.1 2 23 465 486 464 486 0.96
12 16 0.04 2.9 8.6 0.0 1 23 494 516 494 516 0.98
13 16 3.1 2.2e+02 2.7 0.7 2 23 524 545 523 546 0.91
14 16 0.36 26 5.6 0.4 3 23 624 644 623 644 0.95
15 16 0.0039 0.27 11.9 0.1 1 20 652 671 652 674 0.95
16 16 0.046 3.2 8.5 0.2 1 23 681 703 681 703 0.96

Sequence Information

Coding Sequence
ATGCCGTTCCGTTGCGAATTTTGTTCGAGGTTGTTCAAACACAAGAGATCACGAGACCGCCACGTCAAGCTGCACACCGGTGATAGGAAGTATCGATGTGCTCACTGCGAATCAGCTTTTTCCCGCAGCGACCACCTGAAAATTCACATGAAAACGCACGACAACCAAAAGCCGTTCCAATGCACAGTGTGCAACCGCGGGTACAACACGGCCGCAGCGCTCACGTCGCACATGCAGGGCCACAAGCGGGACCGCGACGGCCGCGAGCTCGACCGCCGGAGAGCCTTGCGCTGCGTGCGCTGTGGGGAGAGCTTCAGGCGACCGGATATGCTGCAGGCACACATGACAACAGCACACGGTGCTATGACCCCACCTCGTCGAGTGGCATCGCAACCGCCGCCTACACTCCTTGCGTGTATTTACTGCACTCGAGATACCTTCACCAGTATGGAGCAATTGCAATTACACGTTAGAGCATCGCATTCAGCATTATTAAATGGTGAAGCTCCAACACTGACTGTGGAACAACCGGCGCCCACTGATTTAAGCCGTCGGGGATCTGAAGGAACGCCGCCAGTGAAACGACCACGGTCAAGTTCTGGATCAGCTACGCCTCAAACGGTCCTATCACCCAGTACATTATTGTGTAATCAGTGCGATGCAGCACTTCCTGATTTTGAAGCTTTCCGAGCCCATTTAAAAGGGCACATAGAAGAAGGCGGAAATTTAGCGCAAACGAGCCCTACGCCATGTCTTCATTGTGGAGCCACGTTTACAGACCCGGTAGCCTCGGAACGACATCTAGCAGCGCATTATTTGGCTGTATCGTGCGAATACACATGTCACAGCTGCTCACGAAGTTTTTCCTCACCGGATGACCTTCAGAAGCATCTTATTGAGCAACACGCACATACCCTGTACCGTTGCACTCTTTGCAAAGAGATTTTCGAATCAAAAGTTGCTATTCAGGTCCATTTCGCCGTAGCCCACAGCGGGGAGAACAAGATCTGGGTGTGTCGTTCATGCGGGTCGAGCGGCGGCGCGCTACGTTCGGAGGCGGAGTGCGCGGCCCACGTGCGCAACCGACATGCGGCCGCTCGATGTGCCTGCGGAGCCGTCGTCGCTGGGGCTAGGGCCCTCCGCGAACACGCAGCGGCACACCATAGCTACCGCTGCCCGGTTCCTACGTGCACGGACACTTTCGCAGTGCAATATCTGCTGGAGCGGCACATGCAAGTCCATCATACTATCCCACAGGATGTCAACGGGGACATAGCTCGAACTAAACAATCGGAGAACAACAATGCCTTAGAAAGCGACTGCTCTCCTTGCTTGACAGGCGAGAACCAAACAACAGAAGAGCGTCGTCGCAAGAATGGAGCCGTCGCGTTGCAGTGCGCGTACTGCGGGGAGCGCACGCGCAGCCGCGCTGAGCTAGAGGCGCATACGCGCGCGCACTCGGGGAATACTGCCGCGAGGCATAAGTGCCTCATTTGCGATGAAGTACTACCGTCAGCGGCTGTCCTTGCTGAACATAAGCTTACGCATTGCAAGGTAGTCGCTGGAGACACATGTGCGCGATGTCGCTCGCGGCTGCCGTCAGAAGATGCGTTCCTCACGCACATGGCGCGCCACCATCCCGCGCTCCCCGCGCCCTGCATCATTTGCAGACAAACCCTAGCGTCCGAAGCCGAGGCTCGGCTCCACGCAAGATTCCATCTCAGACCTAATGAAGATGAACAGCGATGCGCTATTTGCTTAAAAACTCTGTCCGAAAGCGAATCTGGTGAAGGCGTCCGCGCTTGTTCCTCCTGCTATGCGAGACACGCCGCACCGCGCCCTCCCCCACCTCCTACTGCAGACAACGACTGCAGACTATGCCGACGATCTCTGGAATCTCCAACCCGTCTCCAGACACATCTTATAGAACACACATTCGCCGGCATCGGCTCGTTCAGTTGCTATTTATGCTCCGCCGTATTCACCAGTGCTGCTGGATTGCAACGACATCTACCGGAACATCCGGCCGCTTCCAGACCTTATGATTGCGCTCGTTGTGGGCTTAAATTCTTCTTCAGAGCGGAGCTCGATAATCACGCTTTGATCCATCTCGAAGAAGCCGAATTAGCCCAAAGAGCGTTCTACGAAGCGTATGCTAGAGGAGCGGCCACGGCCTGGGCAGCGTTGCAATCTGATCCATCCCCGACTACAGTATCAGCGGCGGTTCCAGAAGTTCAAGTGAAACAAGAGAATGAAATTAAGGAAGAGAGAAATGATGAATACATTGAAGTATCGTCTCCACCTCCCGTGCAACCCAGACCATCCTCGCCCATGCCGACCGTAGTGAAACAAGAGAAGCCTGATGATGAATAA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGRELDRRRALRCVRCGESFRRPDMLQAHMTTAHGAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRASHSALLNGEAPTLTVEQPAPTDLSRRGSEGTPPVKRPRSSSGSATPQTVLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGNLAQTSPTPCLHCGATFTDPVASERHLAAHYLAVSCEYTCHSCSRSFSSPDDLQKHLIEQHAHTLYRCTLCKEIFESKVAIQVHFAVAHSGENKIWVCRSCGSSGGALRSEAECAAHVRNRHAAARCACGAVVAGARALREHAAAHHSYRCPVPTCTDTFAVQYLLERHMQVHHTIPQDVNGDIARTKQSENNNALESDCSPCLTGENQTTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGNTAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEDAFLTHMARHHPALPAPCIICRQTLASEAEARLHARFHLRPNEDEQRCAICLKTLSESESGEGVRACSSCYARHAAPRPPPPPTADNDCRLCRRSLESPTRLQTHLIEHTFAGIGSFSCYLCSAVFTSAAGLQRHLPEHPAASRPYDCARCGLKFFFRAELDNHALIHLEEAELAQRAFYEAYARGAATAWAALQSDPSPTTVSAAVPEVQVKQENEIKEERNDEYIEVSSPPPVQPRPSSPMPTVVKQEKPDDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00430847;
90% Identity
iTF_00710405;
80% Identity
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