Psen003557.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- PLAG1
- Assembly
- GCA_001586405.1
- Location
- LQNK01000853.1:6551-13306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.017 15.7 0.9 1 23 228 250 228 250 0.98 2 11 0.00043 0.03 14.9 1.7 1 23 257 279 257 279 0.98 3 11 0.051 3.6 8.3 0.1 1 23 283 306 283 306 0.91 4 11 0.00039 0.027 15.0 3.7 1 23 315 338 315 338 0.95 5 11 0.0071 0.5 11.0 0.6 2 23 344 366 343 366 0.93 6 11 1.9e-06 0.00014 22.3 0.1 1 23 380 402 380 402 0.98 7 11 3.7e-06 0.00026 21.4 1.2 1 22 408 429 408 433 0.93 8 11 5.4e-08 3.8e-06 27.1 2.7 1 23 441 464 441 464 0.98 9 11 5.5e-06 0.00039 20.8 0.6 1 23 470 493 470 493 0.97 10 11 1.6e-05 0.0012 19.3 1.8 1 23 502 524 502 524 0.98 11 11 0.19 13 6.5 0.5 1 22 530 551 530 553 0.79
Sequence Information
- Coding Sequence
- ATGGACGCAATACCCGATGTTGCGGAACGTTGTATCTGCTGTCTTAGTGAAGAAAATATACCTCAAAATTACAGGGTTCAAAGTGAAGTGTTTCAAACACTGTTTCAGACAAGTAATTTAAGCCTTTGCTTTATTTGTAAGAGAATTGCTCAGACATCTGAGCTTTTCATACAAAATGTCCAAGGCAACCAGTTACTATTACAAAGCTTACAGAGTATTACCGACACTGACTTAAAGTCATTAAAACTAGAAGCTCAACCATTCCTCAACCTACAGAAGGCATCCACTCATACCCTTCACCTGACCAGTGATGAGACTAAAGATGAACCGTTTTACACAGAGGTGTATCATAGAAGTAGGGTGCGGTTGAAACTGGAGAAAGAGGATGATACACAGGATGATGATTTTTTTGATAATGATATAAATTATGATGAACCATTGGAGATTAAAAATGAGTTAAAATTTGAGGAAGGTGAAATTCTCAATGTGAAACCAGCGAAAAAAAACATTAAAAAGTCTAGAAAACTTAAGAAAAATATAAAAGTGAAAAAAAAGAAAGAATGTGATTTATCCCCTAATGCTGAAGACAATCCTCAAATAGAGACAGTTTACATAACAAAAACAGAATATATACAGGAAAGGGAAGAATTAGGAAAGAAACAATTATATTTAGAATCTATTTATAAGTGTGAAAGTTGTGTCAAGGGATTCACTTTAAAAGAAATGTACGAAAGACATATGAAGGCTCACAGTAAGGAAAATGGTGAATTTGAGTGTGAATTGTGTTACCGACGTTTTACGACGGATGAAAAATTAATAAGCCACCAAAAGTATCACAGAATCCGTTACAAATGCAAAATATGTGGACTTTTGCGTATATCCCGGAGTACAATACAGACGCATTTGGGTGTAGTGCATGGTGTCATACAAGATGATCAAGTGTACACGTGTACGTTTTGTAAACGGATATTTGAACATAAAGTGGCGTTGAGAAAACACATATACTACTCACATAAGCGACGGCGAGTGACTTGCGACTTTTGCTTAAAGAATTACGCTAATGTTTATTCGCTTAGAAAACACTTGATGGATAAACACGCAAAAGAAGTAGGCAAGGGTAGAGTAGAGAGTAAGAGCCACGTGTGCCCGGAGTGTGGGAAGATGTTCGCGTTTCCCGCCAGCCTGGTCAACCACGCGAAGACGCACATACAAACTAGGAATTACTACTGCGTGGAGTGCAATAAAAGTTTCAAAACTGAATCGTCGTTAAACAACCATTTAAATAAAACAACAATTCATGTGCAGTATGTAGATCTACCATATCAATGTGAACACTGCGACAAGAGATTCGTCAGCAAACGCGATCTGGAGCGGCACATGAACAGGATACACCTCAATATAAGACCGTATCAGTGTGATAAGTGTGACAAGGCCTACGTGAACCAGTGGTCCCTGAGTCAGCATACAAGGTACGCGCATGAAGGACTTCAGAAACCTAGAGTGTACCCCTGCTCTATGTGCGATAAAGTGTTTATGAGAAATTCCACGCGCAAGTCCCACATGTACACGCATACAGGCGAACGTCCATACAAATGTACCAAGTGTACTGCGCAGTTTAGTCAAGCCGGCATACGGAATACCCACGTGAAGTTGGTGCATATGAAGCTCACCAGAGATGGGACACCCAAGGCATTGGCTACTGCTACTAGATGA
- Protein Sequence
- MDAIPDVAERCICCLSEENIPQNYRVQSEVFQTLFQTSNLSLCFICKRIAQTSELFIQNVQGNQLLLQSLQSITDTDLKSLKLEAQPFLNLQKASTHTLHLTSDETKDEPFYTEVYHRSRVRLKLEKEDDTQDDDFFDNDINYDEPLEIKNELKFEEGEILNVKPAKKNIKKSRKLKKNIKVKKKKECDLSPNAEDNPQIETVYITKTEYIQEREELGKKQLYLESIYKCESCVKGFTLKEMYERHMKAHSKENGEFECELCYRRFTTDEKLISHQKYHRIRYKCKICGLLRISRSTIQTHLGVVHGVIQDDQVYTCTFCKRIFEHKVALRKHIYYSHKRRRVTCDFCLKNYANVYSLRKHLMDKHAKEVGKGRVESKSHVCPECGKMFAFPASLVNHAKTHIQTRNYYCVECNKSFKTESSLNNHLNKTTIHVQYVDLPYQCEHCDKRFVSKRDLERHMNRIHLNIRPYQCDKCDKAYVNQWSLSQHTRYAHEGLQKPRVYPCSMCDKVFMRNSTRKSHMYTHTGERPYKCTKCTAQFSQAGIRNTHVKLVHMKLTRDGTPKALATATR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -