Psen004777.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01002058.1:156673-160378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.14 10 6.9 1.0 1 23 50 73 50 73 0.93 2 24 0.023 1.6 9.4 0.1 2 23 97 119 96 119 0.93 3 24 0.045 3.2 8.5 0.7 2 23 142 163 141 163 0.96 4 24 5 3.6e+02 2.1 0.0 1 10 206 215 206 229 0.74 5 24 0.095 6.7 7.5 3.9 1 23 237 259 237 259 0.97 6 24 3.7e-05 0.0026 18.2 0.7 1 23 265 287 265 287 0.98 7 24 0.042 2.9 8.6 1.7 1 22 374 395 374 397 0.90 8 24 7.8 5.5e+02 1.5 0.2 2 23 424 446 423 447 0.89 9 24 0.0015 0.11 13.1 0.8 2 23 469 490 468 490 0.97 10 24 2e-06 0.00014 22.2 0.1 1 23 494 516 494 516 0.99 11 24 0.27 19 6.1 1.8 1 23 521 544 521 544 0.96 12 24 0.27 19 6.1 3.8 2 23 560 582 559 582 0.95 13 24 0.0032 0.22 12.1 0.9 2 23 590 612 589 612 0.96 14 24 0.00069 0.048 14.2 5.6 1 23 618 640 618 640 0.97 15 24 2.4 1.7e+02 3.1 0.2 1 9 646 654 646 660 0.85 16 24 0.098 6.9 7.4 1.0 1 23 718 741 718 741 0.94 17 24 0.89 63 4.4 0.1 2 23 768 790 767 790 0.91 18 24 0.0013 0.093 13.3 0.5 1 23 838 860 838 860 0.97 19 24 0.0048 0.34 11.6 2.2 1 23 865 888 865 888 0.97 20 24 0.16 12 6.7 0.8 2 23 896 918 896 918 0.92 21 24 1.3e-05 0.00095 19.6 0.9 2 23 926 948 925 948 0.97 22 24 4.1e-05 0.0029 18.1 2.0 1 23 954 976 954 976 0.97 23 24 1.4e-05 0.001 19.5 2.4 1 23 982 1004 982 1004 0.99 24 24 0.00016 0.011 16.2 3.4 1 23 1010 1033 1010 1033 0.97
Sequence Information
- Coding Sequence
- ATGAAACAAGTACACAGTGATAAAAGAATTGCCGATAATGCACTGAAGAATTTGGAGGATGAATCTTCAGAAAAGCATTGGTCAAATCTTCTCAATATTTTAAAGTATTCCAACGCTACTTTGATTAAAGACGGTCATTTGAAGGGTTATACGTGTGATTTATGTCCAACGCAGCATGTGAAACCAAAGGATTTGAAAAGACATCTCCTAGATACCCACACAGACAAGATTGAAGAAGAGATTGGATCACTATGTACTTACACAGTAAAAGTAGATATCACCAATCTTACATGCACTATTTGTGACACATCTGTTCCAATGTTAGAACATCTTATTGATCATTTAATTAATATTCATGAAAAACAGCTGTACTTAGACATTAAAAATCATTTGGTGCCTTTCAAATTTGACGATGATGTATTGCGTTGTGTGTTTTGCGCGGAGGTATTCCAGAAATTTGAAAGTTTATCGTCGCATATGAATAAGCATTATAGCAATAGGACGTTGAGAGAAAGCATAGATAATATGATAAATCTTGCTAATGATGCGGAAACAGTTAATAATCGTGTTGAAGATAAATCTCAAAATATAATTGATGAAACGGAAAATAGAATATACGTTTGTAGCATTTGCAATGCCATATTCTTGGAAGACGCTATGCTAGACATTCATGTCAAAAATGAACATGCAATCAAATCATTGTACAAACATAAATGTCTCGATTGTAATATGACATTTTTGACAGAGCAGGGATTGAAACATCACCTGAAGGATCATGAGGAACTGCAGAAATTTGAGTGTAATCAATGTTCTAAGTCGTTTGATAAACCTGAAAAGTTAAGTGATCATTTGTTAACCCATGCTGACCATTTGTCAAAGGATTCTGGGAAAATCGACGTGGTCCTAGCCTCCGAAGGCGATAAAGAAAGGCATTTAAATAAAAAACATGGTGACCTCAAATTACATAATAAAGATGAAAGTAAAAAGGAAAACACGAATATAAACCCTACTAAAGAACGGGCTGCCCTGACGGATAGATGTCGTAAATTTCGTATGAATGTTCTTCAAGTATTATATAACTCTAACGCTACTATTATAAGAAATTGTGTTGATTATGGCTATACATGTTGTTTTTGTACGGAGTATTATGAAAGGCCAGAAGAATTGAAGAAGCACAATATAGAAGCTCATGATAAAGAGTCTCTGCTAAAAGGAATGAGGGCGTCTCATATGAGAAAATTAAGTTTGAAGATCGATATTACTGGATTACGTTGTACCCTCTGTAATTCGGATATATCTATGTTAGAAGATTTAATGACGCACCTTATAGATGTTCATCATATTCAAATTCATACCGATATTCACAACTTTATGATACCGTTGAAGTTTGATAGCGATATTTTGCGTTGCACATATTGTAGCCTGGAATTTTCCAAGTTCAAATCGCTTTTGGAACACATAAATGTACATTCTCGTAATTACGTATGCGAAGTATGCGATCAAACTTTCATAAGTCCTGACATGTATCGAGCTCATCAAAGGATGCATAACACTGGCAATTTCAAATGCGATTACTGTGAAAGAGTTATGAACACAAAAACGAAGAAATTAAACCATGAGCGAGTTACACATGGTCGTTGGAAGAATTTCGATGAAACAGCGTCGAAGTACGTTAATAAGTGTCAATATTGTAGTCAAACGTTTAATGGGTATCATAAAAAGCAAAGGCATTTAATGGAAATGCATGGAGTGAAGCTTCCGGGCTTGCAGTGCAAAGCTTGCGATCAAACGTTTCCAAACCGTCGAAGATATACGATTCATATAAAAAGGGATCATTTGATGGAGAGGCAGCATAGTTGTATGGTGTGCGATAAGAAATTCTTCTCCTCTGTTTGTTTGAAGAATCATATGCTCACTCATTCTGGCGTGCGTAAATATCAATGTGATATTTGTCCCCGTCGTTCCGTCAAAACTGAACAGAAAGATGTTAAAATCGAGAAATCAGGTAAACCGAACGATGATAATGTACAAAATGAAGATACAGTTGCCAAAAAGAAAAAAGGGGAAGATCTTGCAAAGCAAAAATTTAATTTAATAGCCATACTTAAGAATTCGAATGCAACACCTTTGAGATGTCGTGGTGGTATAGGTTATGCTTGTTGCTTCTGTGCGCAAGAATTCCCAGAACCGAACGATTTGAAAAAACATACATTGAACACACATGAAGAGAAAATAAGACTTCGTATTATGGATGGGAAGGATTTGTACAGATTTAACGCAAAACTTGACATAACGGATCTAAAATGCAGTATTTGTGGAAATGGCATAGATACCCTTGAAAAACTTATAGACCATTTCATAAAGGATCATGATATTAAAATGCATATGGATGTCAAGAATCAGCTGATTCCTTTCAAATTTAACTTTGAAGGGTTAAGGTGCTTTATATGTTCAAGTATACATTATAAATTCAAATCGCTTCTAGAGCATATGAATGTTCATTATAGGAATTATATTTGCGAAGTGTGCGACTCCGGTTTTATAAATCGCTGCTTGTTAAATCGTCACGCGGAGACGCACAAGCTCGGTTCGTTCAAATGCGGTTATTGTCCCAAAATATTTGATACGTTAAGGAAGAAAAAGTCGCACGAGAAAACCTCGCACACGCACACGGATGTTATGAATAGATGTGGCTATTGCAGGGCTACTTTTAGAGATTATAGAAAGAAAGAGAAGCATTTGATCGAAGTGCATGGAGCTGTTATGAAGCAATCGAAATGTCCTGCTTGTGACCGAATGTTTAGTAGTCAGAAGGAGTACAACATTCATATGAGGAGATCTCATTTGTTGGATAAAAGGCATAAATGTGAAGAGTGCGATAAGACGTTTTTTACTACGGGGGAGTTGAAGGTGCATACAGTGACGCACACAGGGATACGGGAGTATGAGTGTGATGTGTGCCACAAAACGTATGGGCGTAGGAAGACGTTGCGTGAACATTTGCGGATACACAGGGATGATAGGAGGTTTAAGTGCGAGCATTGCGGACAGGCGTTCGTGCAAAAGTGTAGTTGGCGGGGTCATATGCGAGCGAAGCACGGGGAGAAGGTGTAG
- Protein Sequence
- MKQVHSDKRIADNALKNLEDESSEKHWSNLLNILKYSNATLIKDGHLKGYTCDLCPTQHVKPKDLKRHLLDTHTDKIEEEIGSLCTYTVKVDITNLTCTICDTSVPMLEHLIDHLINIHEKQLYLDIKNHLVPFKFDDDVLRCVFCAEVFQKFESLSSHMNKHYSNRTLRESIDNMINLANDAETVNNRVEDKSQNIIDETENRIYVCSICNAIFLEDAMLDIHVKNEHAIKSLYKHKCLDCNMTFLTEQGLKHHLKDHEELQKFECNQCSKSFDKPEKLSDHLLTHADHLSKDSGKIDVVLASEGDKERHLNKKHGDLKLHNKDESKKENTNINPTKERAALTDRCRKFRMNVLQVLYNSNATIIRNCVDYGYTCCFCTEYYERPEELKKHNIEAHDKESLLKGMRASHMRKLSLKIDITGLRCTLCNSDISMLEDLMTHLIDVHHIQIHTDIHNFMIPLKFDSDILRCTYCSLEFSKFKSLLEHINVHSRNYVCEVCDQTFISPDMYRAHQRMHNTGNFKCDYCERVMNTKTKKLNHERVTHGRWKNFDETASKYVNKCQYCSQTFNGYHKKQRHLMEMHGVKLPGLQCKACDQTFPNRRRYTIHIKRDHLMERQHSCMVCDKKFFSSVCLKNHMLTHSGVRKYQCDICPRRSVKTEQKDVKIEKSGKPNDDNVQNEDTVAKKKKGEDLAKQKFNLIAILKNSNATPLRCRGGIGYACCFCAQEFPEPNDLKKHTLNTHEEKIRLRIMDGKDLYRFNAKLDITDLKCSICGNGIDTLEKLIDHFIKDHDIKMHMDVKNQLIPFKFNFEGLRCFICSSIHYKFKSLLEHMNVHYRNYICEVCDSGFINRCLLNRHAETHKLGSFKCGYCPKIFDTLRKKKSHEKTSHTHTDVMNRCGYCRATFRDYRKKEKHLIEVHGAVMKQSKCPACDRMFSSQKEYNIHMRRSHLLDKRHKCEECDKTFFTTGELKVHTVTHTGIREYECDVCHKTYGRRKTLREHLRIHRDDRRFKCEHCGQAFVQKCSWRGHMRAKHGEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -