Psen000398.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01001288.1:131981-141364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.003 0.21 12.2 1.0 3 23 209 230 208 230 0.96 2 23 0.028 2 9.2 0.6 1 22 605 626 605 626 0.95 3 23 4.2 3e+02 2.3 0.3 1 22 668 689 668 691 0.82 4 23 0.25 18 6.2 0.5 3 21 702 720 700 721 0.93 5 23 0.66 47 4.8 0.0 3 23 730 751 728 751 0.89 6 23 0.026 1.8 9.3 0.1 3 23 771 792 769 792 0.96 7 23 0.093 6.6 7.5 2.9 1 23 798 821 798 821 0.95 8 23 0.079 5.6 7.7 0.0 1 23 847 870 847 870 0.90 9 23 0.024 1.7 9.3 3.3 1 23 875 897 875 897 0.96 10 23 0.0038 0.27 11.9 0.2 1 23 903 926 903 926 0.95 11 23 7.6e-05 0.0054 17.2 1.5 1 23 939 961 939 961 0.97 12 23 0.00011 0.0079 16.7 1.8 1 23 1010 1033 1010 1033 0.97 13 23 0.0017 0.12 13.0 1.7 1 23 1094 1117 1094 1117 0.96 14 23 0.00064 0.045 14.3 2.1 2 23 1137 1159 1136 1159 0.95 15 23 0.013 0.9 10.2 0.1 2 23 1165 1187 1164 1187 0.94 16 23 0.0062 0.44 11.2 0.2 1 21 1231 1251 1231 1252 0.95 17 23 0.00077 0.055 14.1 0.6 1 23 1262 1284 1262 1284 0.93 18 23 0.00013 0.0092 16.5 0.3 2 23 1375 1397 1375 1397 0.93 19 23 1.1e-07 7.9e-06 26.1 1.1 3 23 1404 1424 1403 1424 0.98 20 23 0.0045 0.31 11.7 0.1 2 23 1443 1465 1443 1465 0.96 21 23 0.076 5.3 7.8 0.0 1 23 1487 1509 1487 1509 0.97 22 23 0.0075 0.53 10.9 0.4 1 23 1515 1538 1515 1538 0.95 23 23 0.00016 0.011 16.2 0.4 1 23 1546 1569 1546 1569 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTCCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTTGTATCGAAAATCAAGGATTGTGTGTCCGTTCAGATAAACGAAAATGACGAACTGCCCACTAATGTCTGCAGGAAATGCTTGGATAATGTCAATAATTGGCATATATTCAAGACAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTCATAAAGAGAGCAGCCATCTGGAAGAGGTTCATATCAAATCTGAACCAAATGAAGGATTATCTGATGGAGGATATGATGATGGGGTTGCTATTGATGGGTCATATCCCCAAATTGAAAATGCTGGACCATCCAATAAAGTACAACCTGAGGGTCCACCAATTTTGGCATCTTTGGGACTCACTCCAAGAAGTGATAAGGGTGTGGAAAGCGAAAAAGATGAAGAGGAAGAATATGAGGAGACAAATGAACAGCAGAATTTTTCGAACCCACCCAATGTACCTGAAGTGTCCATTACTGTAATGCGACCTACAGGAGAAACTCTTCACGCGCGACAGGGAATACAACAGCTAGCGTCTAAAGATTGTCTCGTTTGTGGTCGATCCTACAGGTACTCTCATAATGCTCGACGCCACGAACTTACAGCCCACAGTTTTGATAGATACACAAACAAAATCACAGCTAATAAAAAGAACAATCACATGCAACCAAAACTCAGGCCCAACCCATTTAACCCTAAGGCCCGTTTAATGCCAAACCCTATTAGCCATAAAATGCAACTAATTCCAAATACTCCTATGGCGATAAAAATGATGCCTCAGAAGACAATTATACCACCGAAACCTATTCCTATTAAGAACCTTAAACCACCACAAAACAATTTGCCATATCCCTTGAGAATCAAAGCATTGAAAGATTTGCAAATCAAAAAGAAGGAACCACAAATTCTTAAGACTCTACTCACTACAAAGCCGGAGGTTTTAGTATCTGAGCCTGAAATTCTTAACTCTGGCCCTGAGAGTCCAGAGACATTAATATCAGAACCTGAAATAGCTTCCTTCCAAGTAGAAACTATTCTATCGGAGCCAGACGGCTTTATAAATAATCCAGATGATGCAGAAAACGATGATGATATGCAAAATCAAAGTCAAAATTATGACACTGTTGATATGGATTCTGATAACGAGATTGAAATTGCCCGTCAAGAAGAGGGTGAAATTGAGCAAAATGAGGTACAGGGGGAAATGGAAACAGAGGAAAACCTTAACAATGAGGAAAATGAAAATGAGGAACAAAATGAAACTGAGGCTGAACAAAAGGAAGATGAGAGTGAGCTTCAAGAAGATGGCAATGATGATAATAATGAAACTGAAAAGGACGCCAAAGAGAGCGAAGAGGGCAATGAGGAAAAAGAGGTCAATAATGACGAAGATATCCAAGAAAATGATGGTGACGAAGATCTCCCTCCACTGGCTCCAGTTGTGGAGATTAATGAAGATATGCAAACAAATTCTTATAACAGCGAGATGAATGAAGAAGAAGAATTGGAACTTGACGATTCAGCCGATCCTAATGATACAGTTGATGGCGATGATAAAGAACTAGATCCTGATAAGCAGTACGTCACCAAAACGCAACGAGATTTCATAAAGAAATATCGCGATATTATTGAACAAATTAATACAAAACGGTGTCTTTGCTGTAACAGAGAACATCCACGAAGAAAAGCTGTCATTCAACATTTACAGAAAAATGGACACAAAGTGCCGAAACACACTTGTTATAACTGTGTCGTAACATTCAGTCACATTGGCGCTTTACTGAGTCACATGAGATCAAACACTTGCACAGATTTGTGGAAAATAATCTACAACGAAAATGGTATCTCTGATGATCAAGTTCTCGAAGACGAACGGAAAGACACCAAAGTACAGTACAAAGATATATTTAACGCCCGATCCTACGCTTGCAAGCTGTGTCCAGCAAAATTCCAATTGAAACAATTTATTATGAAACATGTTTTAGATGTTCATGAGGATGGCCAATCGCTGGTTCATCTTGCTTGCGTACATTGTGGTTCGCGATTTAAAGACAAGAACATTTGGAAGAAACATATTCGTAATGGTGAATGTACTGTTTACATCGCCTGTGACCTGTGCCCAGAGAAATTCGGCAACATGCAAGATTTCAATGAGCATGCTCTGGCGATTCATGCGGGTAGTTTTGATTCTGATAATCAGAACAAGTGTGTCGACGGTCGCCCGACTGACTGTCCCATTTGTGGTAAAAAGAACAGCGGTTACCCAAATTTAGTTAAGCATTTAAAAATAATACACAATGAGGAAAAACCACATTATTGTCAACATTGTGATTCCAAATACGAACTCGCCACTGATCTGAACAAGCACATTTATATGGAGCATTCTGATAAGGTGCTAGGAGTGCAGTCCTCGGAACCCGACATGTCGCTTGTTAAAGAGGAGGCCGAAGAATATCACTATTCTTGTACAGAATGTAACGCCATATTTGAAACCGTCGACGCATGGACTGATCATCAGGTCGCTGAACACAATCAAATCGCTCACCATTGCGACCAATGTGAAAAGAAATTCCTAAGACCTTCTGAACTGGCAGAGCATAAAAATAGTCACTTGCGCGTCAAGTTTTACCCTTGTAATATTTGTTCGAATTCATACAGTACTCCACAAAAATTGGCCGAACATGTCCAACAAAATCATCCCGGAATGAGTGGAGTAGGATCGGGAGAAACAGAATTTTTCTGTGACATATGTGTAAGATCATTTAAGAGCCGTCAGGCCTTTTCAAACCACATGCGCATTCATGCTAAAGTCCCCACTACTAATAGAAAGCCTGGAGAACCGAAGAGTTTTGCTCCACAAATAATTGGCAAACCTATTCGACATTTCTCAATGGTACAACCCGGATTTAGTCCGTTTAAGCCTAATTGTAATGTTCCAAATGCACCTTATTCCTGCGATATTTGTGGCAAAGGATTCATGCATAAGAAAAACATATGGAAGCACAAGAAAGTCTTACATGCAGACATTTTGAATGATAGAAATGATAGTGAAGAAAACACAATGCATGCTTCTACAGAAGAGGATGAATACAATCCTGACGAAAATGGAGCTATCCTTTCCACACCACAATTTAATAGCTTCAATTTTGCCAATATTACAACCAGCATGCAGTCGACACCTTCACAAGATGCCATGCCATATTCCTGTGAACTATGCTATAAACGATTCCCACTTAAAACGAGCCTGTGGAAACATAAGCGCGCTAAACACGGAATCATCAATGCAAGCGCCACAGAAAATTCAATTGAGGTTAATAATAGTAGATCCAGTTGTACCATATGTAAAATATCGTTTACTGACAAAAAATCCTACTATCGCCACAGGAAAAATGTTCATAAATCCACCGTGCAGATGTGTAAAATATGCGGTAAGCCTCTGAATTCTACTCAAGAACTTTATGACCATCTTAAGGCCGCGCATGCCCGGGAATTATTAGGCTACAATGCTAGCCAAGGCCCCAGTAAATCGCAGGATATGTCTCAAGAAATTGAGATTGAATATGAACAAGAGCCAGAACCTGTGGACCCCAGTGCAGATTACCAAGCCCGTTATCCATGTGACACTTGTGGCAAGCAATTTGTTGGATTATTAGCCTTGCAAAATCATCAATGTATCAATCAAGTGACGCAACAGCCACAGACATTTGATTGTGAAATTTGCCACAAGAGTTACACGTCGATCGCTGCGCTCAAGAGTCATCGCGGATGGCATTTGCGGTCACCTGACGGTAAGGCTGCTGCAAACAATAGCGGACTGTGGATGCCACAAAACAAAGTAACCAGTAAAGTCAGTAAATATGAGGTCGTTGACCCGTCTCAATTAGCCCGTGTTACGCACACGACAACCAGTCCAGCCTCTATTGCGAAACGAAGATTACCGCCAGAGGTAGAAGTTACGGTAGTCAATCCTAACAAAAAAATGCGATCCGATGATTCCATAGAAATGGACCAGCAGAATACATCGACCGGGGCGGACGATAGGTATTGTAATATCTGTGACCGAGAATTTACAAAACGAGCAGCGTACCAGCGTCACATGGACGAAGTGCATCAGCCCAATTCTGTGTTCTGCCCAGTTTGTGACAAGAGTTTCACAAGGAAATCTACTTTGATTGTGCATATGAAGAAGCACTACGATTCTGGGGAAGGGAGTTCGAGCATGAACGCGCAAGAGGACGACGCTAACTCTTGCGATGTATGTGGGGAACAATTCGATAGCGTTAAAGCATTGAATGTGCATCGTGAGACTCAACACGGCGACGAAGAGTCTAATGAATCTGAAGAAGACGGTTCTGTGCCATTCCCACAGCCCGGTGAGTTTACGTGTGGACAGTGTGGGGACGGCGTTGCCACTCCCCGTGATCTTATTGCTCATAGAACTATGCACTCGACACCGACAAAGTTCTTCTGCAACATTTGTAAGGTTTACTTCGCGAGGGCAATCGACTTATCGTCGCACACGCGAGCTCGACATTCTGACAACGAAAAGGTGTTCTTCCCTTGTGCTATGTGCGACCGGTTTTATATGAATAAGAAGAGCTTACAACGGCACATTGAAATGGCGCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLVSKIKDCVSVQINENDELPTNVCRKCLDNVNNWHIFKTVCERTQNKLQSLIHKESSHLEEVHIKSEPNEGLSDGGYDDGVAIDGSYPQIENAGPSNKVQPEGPPILASLGLTPRSDKGVESEKDEEEEYEETNEQQNFSNPPNVPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITANKKNNHMQPKLRPNPFNPKARLMPNPISHKMQLIPNTPMAIKMMPQKTIIPPKPIPIKNLKPPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDGFINNPDDAENDDDMQNQSQNYDTVDMDSDNEIEIARQEEGEIEQNEVQGEMETEENLNNEENENEEQNETEAEQKEDESELQEDGNDDNNETEKDAKESEEGNEEKEVNNDEDIQENDGDEDLPPLAPVVEINEDMQTNSYNSEMNEEEELELDDSADPNDTVDGDDKELDPDKQYVTKTQRDFIKKYRDIIEQINTKRCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGISDDQVLEDERKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSLVHLACVHCGSRFKDKNIWKKHIRNGECTVYIACDLCPEKFGNMQDFNEHALAIHAGSFDSDNQNKCVDGRPTDCPICGKKNSGYPNLVKHLKIIHNEEKPHYCQHCDSKYELATDLNKHIYMEHSDKVLGVQSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCNICSNSYSTPQKLAEHVQQNHPGMSGVGSGETEFFCDICVRSFKSRQAFSNHMRIHAKVPTTNRKPGEPKSFAPQIIGKPIRHFSMVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANITTSMQSTPSQDAMPYSCELCYKRFPLKTSLWKHKRAKHGIINASATENSIEVNNSRSSCTICKISFTDKKSYYRHRKNVHKSTVQMCKICGKPLNSTQELYDHLKAAHARELLGYNASQGPSKSQDMSQEIEIEYEQEPEPVDPSADYQARYPCDTCGKQFVGLLALQNHQCINQVTQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDPSQLARVTHTTTSPASIAKRRLPPEVEVTVVNPNKKMRSDDSIEMDQQNTSTGADDRYCNICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDSGEGSSSMNAQEDDANSCDVCGEQFDSVKALNVHRETQHGDEESNESEEDGSVPFPQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -