Psen013028.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000047.1:638408-643711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0025 0.17 12.5 0.4 1 23 18 41 18 41 0.96 2 26 0.03 2.1 9.1 1.6 1 23 79 101 79 101 0.95 3 26 0.048 3.4 8.4 0.0 3 23 130 151 128 151 0.90 4 26 0.00065 0.046 14.3 0.9 2 23 172 194 171 194 0.95 5 26 7.8e-05 0.0055 17.2 0.3 1 23 199 222 199 222 0.93 6 26 0.0014 0.1 13.2 0.6 1 23 227 250 227 250 0.96 7 26 0.00016 0.011 16.2 1.9 2 23 253 275 253 275 0.96 8 26 3 2.2e+02 2.7 3.9 3 22 283 302 282 302 0.93 9 26 0.01 0.72 10.5 0.6 1 23 354 377 354 377 0.95 10 26 0.47 33 5.3 0.0 2 23 405 427 404 427 0.91 11 26 0.5 35 5.2 0.2 3 23 451 472 449 472 0.93 12 26 0.00025 0.017 15.6 0.2 3 23 479 500 478 500 0.94 13 26 0.12 8.8 7.1 5.9 2 23 505 527 504 527 0.93 14 26 0.00071 0.05 14.2 1.5 1 23 532 555 532 555 0.97 15 26 9.9e-06 0.0007 20.0 4.9 1 23 559 582 559 582 0.97 16 26 4.3e-05 0.003 18.0 0.3 2 23 589 610 588 610 0.96 17 26 0.016 1.1 9.9 0.3 1 23 667 690 667 690 0.97 18 26 0.0088 0.62 10.7 0.1 2 23 721 743 720 743 0.94 19 26 0.0019 0.13 12.8 0.6 2 23 766 788 766 788 0.96 20 26 0.0028 0.2 12.3 1.4 1 23 793 816 793 816 0.95 21 26 0.14 9.8 7.0 0.4 1 23 821 844 821 844 0.93 22 26 0.026 1.8 9.3 0.3 2 23 850 872 849 872 0.91 23 26 6.1e-07 4.3e-05 23.8 0.2 2 23 880 902 879 902 0.97 24 26 0.0088 0.62 10.7 0.0 2 23 909 930 908 930 0.97 25 26 1e-06 7e-05 23.1 0.5 1 23 936 958 936 958 0.93 26 26 1.2e-06 8.5e-05 22.9 1.7 1 23 964 987 964 987 0.98
Sequence Information
- Coding Sequence
- ATGGCACCGAATTTACGATTCCACATAAGACGATATCATAGCACCGCGTCCTATAAATGCAGTAAATGTGATGTAGAGTATAGTATACGAGACGATCTTTTAAAACATAAAGCAAAAGCCCACGATGAAAACGCGGAAGGGCCAAGCGAGTACTATGCGTCTGAGAAACGAAGGAAAAACATGCAAGTACTGTTCAACAACACGACGATTATACCCTTCAAATGGAAGGGTAGATTTTTGTGTTTCTATTGCGCGAAAGATTACGCCGTGTATTCTGAATTCAGAAAACATACTAAGTCCCACGGGCTTTGCACTACGAAGGACTATTCTTTGAAAGTCATAAAAGGAAGCCACATACAAATTAAATTGGACATTTCGGATATTAACTGTGAAATTTGTAACGAACCATTTAATACCTTAGATGAGATTGTCGATCATTTGATTGGGAAACATGATGTTGAATATGATAAAGCTGTTGACATTCCATTTACAGAATATAGATTGATAGATATGAAATGCCAGTTTTGTAGCAAGGAGTTTTCGTATTTTGGGTATCTAATACGACATTTGAAACTAGCTCATCCAAGGAATAATTTTATTTGTGACGATTGTGGGGCGACGTTCAATACGAAACGAGATTTGGCCGCGCATTTTAAGTTTCTGCATCAACAGGGCGGTTATCCCTGTGACCAGTGTTCTGAAGTTTCCATCTCGCAATATGACCTTAAAAAGCATAAAAATAACTATCACTTCAGGAAATGCACGACTTGTGATGCTAGTTTTGCAACATATCATTTGCTGCAGAAACATATTAAGAACGATCACGCTAACGTTAAAAATAATAACTGTCCACACTGTTCCAAAAAGTGTCATTCGTCGCTAGGCGTTAAATTGCATATAAAAACGTGTAAACTCAAAGTTGCTTTGAAAGCCCAAGCACCGCAACCTTGCGAGAATATAATCGAGCCCAGAAAGAAACAAAACATTTTACAAATCAGGCAAAATATACTTAGTGTCCTAAACATGTCCACTGCTGTTCCTTTCAAATTCTTCGGCAAATTCTCCTGTTTTTACTGCTCGATAAAATTCGCTGAGTTCGACGAGCTAAAATCCCATACAGCCATGGAGCATCCCGTTTGCGATATAACCTCAAAATGTATGAAGAAGTGCAAAGGGGAAAGGACTACAGTGAAGGTGGATATATCCTCCCTATCCTGCAAGTTATGTGGCCAATCTATGGACAAATTAGATGGTCTAATCGACCATATAATAGGAAAACACAACGCACCTTACGACAAATCTATGAAATCCTGCTTCGAACCGTTTAGAATAGTGAAAGATAATATTGCGTGCATGTCTTGCCCCAGCGTGTTTCGATACTTCGCGACATTACTGCGTCATAGTAACTCAGAACATAGCAACAACAGTCGTATATGTGACTTCTGTGGGCGAAACTTTAAAAGTGTAACGAATTTGAACGTGCATATATCGTACGCTCACACCGGAGCCTGCGATTGTGATGTATGCGGTGTTCAATATAAGAACCAGTGGTGTTTGAACCGGCATAAGGCGAAATGCCATAACGTGAAAGACTTCAAATGCCCCAATTGCCCTGAATTGTTCCCGTCGCAGTATCACAGACAGAAACATCTGATCAAAGAGCATGGCATTGGACATAAATGCTCTTACTGCGGTCGAATGTTTACAAGGAATTCGTTCATGAAAGACCATATAAGGCGGACCCATTTGAAAGAGAAGAACGTAGAATGTTCTATCTGTGGGGAGAAATTCTTCGATAACTACCTTCTGAAAATGCATATGGTTAAACACGAGGGGGTCAGGAAGTTCAGCTGTGATGTGTGCTGTTCAAAAACCGATACAACGGAGGACAAGAGAAAGAAAAACGAAATGGTGCGAAAACTGTTGATCAAACGCAGGAATATTGAGTATATTTTGCAATACAGTAACGCGACACCATTCCTATTTTATAAGGGAAGGTACAGATGTTTCTACTGCACTGAACCTATGAAAGATCCCGACCTACTTCGAGATCACACTTTAAAGGTTCACCAATTTTCCAATCTAGAACTAGTCATACATGATAGAACGAAAAATAATAGAAACAGAGATGCTGCGGTCAAAATAGATATTACAAACCTTTCCTGCAAGCTATGCCCCAAAATTGTTGATGATTTAGAACAGTTGATCCATCATTTAATAATAGCCCATGATGCTGAGTATGACGTCAGTGTACCGAACTGTCTCCTACCCTTCAAATTGGATAAAGATCAACCTACATGCCCTATATGTAACACCAAATTTGTCTTCTTCGAATATTTATTACGACACGCGAATAAATACCACCTATCTCATGATTATATTTGTGATGTTTGTGGGACTAGCTTTCAAGGCGAGAACCACCTTCGAATGCACAATAGATACTATCATAGAGAGGGGGGGTATACCTGCGATTATTGTGGGATTAATTTAGAGACGCTATCCAAAAAGACGCTGCATGAGAAGAATATACATTTAGCAAATTTGCTGACTTGTCAGTATTGCCCGGAGATTTTCAAAAGTCCATATTTTAAGAAGCTACACTTAGCCAATGTTCACGGGGTAGCTGAGCTCAAGATAAAATGTCCGTACTGTCCCAAAGTGTTCCCACAAGAGAGTTTGATGTCCCGGCATATGAGGAGGGTACACCTACGGGAGAAAAACGTGGAGTGTCCGATATGTGGGGACAGGTTCTTTGGGCCGTATGATGTGAAGTTGCATATGTTGAAACATAATGGGGATAAGAAATTTATATGTTCGATTTGTGGGAAGAAGTTTTCGAAAAAGAGTAATTTGAACGCGCATTCGGTTATACATTCGGGGAGGAAGGATTATTCTTGTAGTGTTTGTGGGAAGGAGTTCGCGCATCGGCCTAACTTGAGGATACATTACAGGACGAGACATCCTCAGTTTGTGGAACAGGAGGGCGTAGGGGATAATGTGTTTGTTAATATGGAGTTTGGGACTGATTTTGATGTTGTTGAAGAGACTGTTTAA
- Protein Sequence
- MAPNLRFHIRRYHSTASYKCSKCDVEYSIRDDLLKHKAKAHDENAEGPSEYYASEKRRKNMQVLFNNTTIIPFKWKGRFLCFYCAKDYAVYSEFRKHTKSHGLCTTKDYSLKVIKGSHIQIKLDISDINCEICNEPFNTLDEIVDHLIGKHDVEYDKAVDIPFTEYRLIDMKCQFCSKEFSYFGYLIRHLKLAHPRNNFICDDCGATFNTKRDLAAHFKFLHQQGGYPCDQCSEVSISQYDLKKHKNNYHFRKCTTCDASFATYHLLQKHIKNDHANVKNNNCPHCSKKCHSSLGVKLHIKTCKLKVALKAQAPQPCENIIEPRKKQNILQIRQNILSVLNMSTAVPFKFFGKFSCFYCSIKFAEFDELKSHTAMEHPVCDITSKCMKKCKGERTTVKVDISSLSCKLCGQSMDKLDGLIDHIIGKHNAPYDKSMKSCFEPFRIVKDNIACMSCPSVFRYFATLLRHSNSEHSNNSRICDFCGRNFKSVTNLNVHISYAHTGACDCDVCGVQYKNQWCLNRHKAKCHNVKDFKCPNCPELFPSQYHRQKHLIKEHGIGHKCSYCGRMFTRNSFMKDHIRRTHLKEKNVECSICGEKFFDNYLLKMHMVKHEGVRKFSCDVCCSKTDTTEDKRKKNEMVRKLLIKRRNIEYILQYSNATPFLFYKGRYRCFYCTEPMKDPDLLRDHTLKVHQFSNLELVIHDRTKNNRNRDAAVKIDITNLSCKLCPKIVDDLEQLIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPICNTKFVFFEYLLRHANKYHLSHDYICDVCGTSFQGENHLRMHNRYYHREGGYTCDYCGINLETLSKKTLHEKNIHLANLLTCQYCPEIFKSPYFKKLHLANVHGVAELKIKCPYCPKVFPQESLMSRHMRRVHLREKNVECPICGDRFFGPYDVKLHMLKHNGDKKFICSICGKKFSKKSNLNAHSVIHSGRKDYSCSVCGKEFAHRPNLRIHYRTRHPQFVEQEGVGDNVFVNMEFGTDFDVVEETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710400;
- 90% Identity
- -
- 80% Identity
- -