Psen012553.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000982.1:116732-118672[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-08 6.6e-05 22.6 0.0 4 36 21 54 18 59 0.89
Sequence Information
- Coding Sequence
- ATGCCTACTAAATATCAACGGAAACCCGGCAGTCGTCGCTACGTAAATTACACTGAAATAGAATTAGCAGAGTGTTTACATGCTATAAGATCGAACCAAATGACCCAAAGAGCGGCTGCAGTGCGATACAAAATTCCTTGGAGCACAATAAAAAATAAATTGAAGTCCAAGTTTGGCAACAAACCAGGCCGACCCACAATATTTTCAGTTAAAGAAGAAAATGCGTTTGTCGCCCACATTATTGCACTTTCCGAATGTGGATTTCCTTTAACCTCACCCGACATTAAAATGATAATCAGAGACTATCTTTCAGAACACAGTAGGGTTGTACCTCAGTTTAATGGTAATACTCCTGGAAAAGACTGGTTGCAATCTTTCCTTAAACGAAATAAAGTCCTTTCGTTGTGCTTAGCAAAGAATATCCAAAAAAATAGAACTCGTATATCAAAAGACGTCATTACGGATTTTATAGAATACACTAGAAGAGAATTAACGGAAGTACCCGCAGATAACATATATAATTATCATGAACTTAGTCTGAGTGACGATCCTGAGAAGAAAGTAATCATATGTAGACGAGAGGCTAAGTACCCTGAAGCTTTGCCTAATGCAATCAAAGTCAATTTCACCGTGACGTTTTGCGGAAACGCTGTTGGACAAGAGGTTCCTCCTTTCATAATTTATAGATCTGACCATGTCTGGTCAAAGTGGACCATGAACGGCCCGGAAAATGCACGATATGACAGAACAAATACTGGATGGATGAATACAGTTACATTTGAAAATTGGTTTATAAATCATCTCATTCCCATTTTGAGAACAAAAAGTGGACGGAAGGTGGTCATTGGCGACCACCTCTCATCGCACATCAGTCCAACAGTCCTGTCTGAATGTCAGGAACATAATATTAGCTTCATTTGTCTGCCTCCCAATTCCACGCACATCCTCCAACCGTTAGATGCGGCTTACTTTCAGCCATTGAAATGCAAATGGCGACAGGTCATGTTGAACTGGAAATGCCATCAATCAGAAAAGGCATTACTGACCGTACCGAAGTACCAATTTCCTGGACTGTTAACAGAAGCTTTGAGAGGAATAGCTAATACAAAAGAAAATTTGATTGCAGGGTTTAAAAAGACTGGGATCTTTCCTGTCGATAGCGAACAACCTTTGAGTCGACTGTCGAGAGAAAATCGAATTGGTAACTCAGATCTTGTTGAAGATACATTTACTAATAGTTCCTATCAAGAAAAATGTGTAAAAAAGAGAAAGTTGAATGCGTCGCTACGTCACTCAAGTGGTTCTGTTGACCTTGAGGAATCAGGTCCTTCTGGTCGGCAATCAGAAATCAGAAAAAGAAGAAGAGTTGGTAAAGTTAAAAGAGAAAGTGCTTCAGAAATTGACTTTGATTCTTCAAGTGAAGATGATATGTCTATCTATGATGAAGATATTGATTCTAACGAAAAAATTCCAAAACATGAGTATAAAAGTGATGAAGAACAAAGTAATTATGAAGATGAAAATGTAGAATATTTAGATTTAGATGAGAACTCAGATCCTTCTGAAGAGAATATCGAGCGAGATCGATCTCATAATACCAAAGATTCTGCACCGCTATATATAATTAAAGTAGAAGAGTCGGCCGATTCAAAAAATGATACTTATCGTCAGGTTAAGGTGGAGAGCGAAATAAAGACTGAGAACTATTATAGCGAAGGAGACTATGTGTTGGTTTTATCGTACTCAGAAATTTATCCGGGTCAAATAACTCTTGTAAGCGAAGAGGGGGCTTTCGTCAGTTGTTTAAAGAAAGGAAAGACATACTGGCGGTGGCCTGTTATCAAGGATGAGCAACTGTATAGTTGGAATGAAATGATCTGCAAAATAGACGTCCCTAAATTAGAAAAGAAGGGTTGTTTCTCAATTCGCGAATTAGACTAA
- Protein Sequence
- MPTKYQRKPGSRRYVNYTEIELAECLHAIRSNQMTQRAAAVRYKIPWSTIKNKLKSKFGNKPGRPTIFSVKEENAFVAHIIALSECGFPLTSPDIKMIIRDYLSEHSRVVPQFNGNTPGKDWLQSFLKRNKVLSLCLAKNIQKNRTRISKDVITDFIEYTRRELTEVPADNIYNYHELSLSDDPEKKVIICRREAKYPEALPNAIKVNFTVTFCGNAVGQEVPPFIIYRSDHVWSKWTMNGPENARYDRTNTGWMNTVTFENWFINHLIPILRTKSGRKVVIGDHLSSHISPTVLSECQEHNISFICLPPNSTHILQPLDAAYFQPLKCKWRQVMLNWKCHQSEKALLTVPKYQFPGLLTEALRGIANTKENLIAGFKKTGIFPVDSEQPLSRLSRENRIGNSDLVEDTFTNSSYQEKCVKKRKLNASLRHSSGSVDLEESGPSGRQSEIRKRRRVGKVKRESASEIDFDSSSEDDMSIYDEDIDSNEKIPKHEYKSDEEQSNYEDENVEYLDLDENSDPSEENIERDRSHNTKDSAPLYIIKVEESADSKNDTYRQVKVESEIKTENYYSEGDYVLVLSYSEIYPGQITLVSEEGAFVSCLKKGKTYWRWPVIKDEQLYSWNEMICKIDVPKLEKKGCFSIRELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193538;
- 90% Identity
- iTF_01193538;
- 80% Identity
- -