Psen015803.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01000128.1:392764-396041[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-12 3.2e-09 36.5 0.0 4 35 169 201 168 208 0.91 2 2 8.8 1.1e+04 -3.6 0.1 31 41 445 455 445 458 0.75
Sequence Information
- Coding Sequence
- ATGGATTTGGATTTAATAAAAAGTGAAAATGTAGAGTTAATAGGTCGATGTAAATGTTGTTTAGATGATGTTAATCTACAAAATTTATGGGAAGAATACTATAATGATGGTCAGGTAGAAATATATGGTTCTATGCTTGAAGAATGTTATTCTTTTAATTGGGAATATAAACAGCATAATGAATTTATTTGCGATGCATGCATTGTACGTCTACGGGATGCACTGAATTTTAAAAGAGAAATAATTGCTTCTAAGGAAGTTCTGCAACAAGTGGAATTGAATTTGAAAGTTGAAAATGACAATTTCAATATTAAAGTGGAAAACTTGGATGATGCAGATCATGTTGATGATTATCAGGATATAGAATATTTGGAAGTAGAAGTTGAAAATAGTGGTTACTCTGAAGCTAATGAGACAAAAACAAAAGATGAACCAAAACGAAAGTGGCCGAAGAAAAGAAAAGGTGCTGATCGTTTAAAAGTTTATAAGAAGTACACTCAGTTAGAGATGAGAGAAGCTATAGAGGCTGTGAGAAGTGGTAAAATGGGCCGTGCAGAAGCTGCAGATGCTTTTAACATTCCGAGAAATACTTTAACAAACAATTTGAATAAGTTCAATGCTATGATTGAGACACAAAATGATTCTAATTCTAATTCCAATGAGGAGATATCTAATAAGGAAAGAAATTTCAAACTGATTGAAGAAATCAAGACTCTGCTGACATTTACAAATGCAACACCCTTTAAAACCAAAACAGCTAAATATTATTGTGCATATTGTTCTACGGAAGGACCTGTATTTGATGATGGTGATGAATTACGAATTCACACTGTTAATGAACATAGTGAACATCGAACATACAATGTAGATCACTTTATGAGACCATATTGGCTGAATGAAATCCTCAAACTGGATGTAGATAACCTTTCATGTAATTTATGTGAAACTAAACTTCCAGATTGGAATGGAATGTTCCAGCACTTCGCTAATAAACATGATATTGAATTTGATGAAGCTTACACTAGAGTTGTTCCATATATAATTAAAGATAATATCACTTGTGTGCTATGTCATGAATATTTTTCCAATTTCCATCAGGTGGATGGTCACATGAATGCCCACTACAATAACTATATTTGTTACGAATGTGGTGATACTTTTGTTGCTGCTAGCCGCCTGGAAAAACATGTTCAAGTGCATAGCAAGGGAAAATTTCCATGTGAGGAGTGTGGGAAAGTGTTTTCGTTGCAAAAATATCGCGTAAAGCACTTCAACTTAGTGCATAATAAAGTTACTGAGATAAAGTGTCAATTTTGTCCCCAAAAGTTCAGCAGTACACTTTTGCGACATGTGCATACTGTTGAAGAACATAAGGACCAAGTAAAGGAATATACATGCGAGTATTGCGGAACAGTGTTCAATTATAAACCATATTTCCTTAAACACTTGCAAAGAAAACATAGCATGAATAAAAAGTATAAGTGTGAATTTTGTGATAAAGCTTTTATGAAAAGATATGATTTACGTGTACACATGGTACGGCATACACAAAACAAGAAGTATGTATGCACTGTTTGTGGAGAAAGTTTTAAAAAGAAGATTAATTTTAAGCATCATTTTAAAATTCACCAAAATGCCAAAGGAATTCAAATGACATTAAATTAA
- Protein Sequence
- MDLDLIKSENVELIGRCKCCLDDVNLQNLWEEYYNDGQVEIYGSMLEECYSFNWEYKQHNEFICDACIVRLRDALNFKREIIASKEVLQQVELNLKVENDNFNIKVENLDDADHVDDYQDIEYLEVEVENSGYSEANETKTKDEPKRKWPKKRKGADRLKVYKKYTQLEMREAIEAVRSGKMGRAEAADAFNIPRNTLTNNLNKFNAMIETQNDSNSNSNEEISNKERNFKLIEEIKTLLTFTNATPFKTKTAKYYCAYCSTEGPVFDDGDELRIHTVNEHSEHRTYNVDHFMRPYWLNEILKLDVDNLSCNLCETKLPDWNGMFQHFANKHDIEFDEAYTRVVPYIIKDNITCVLCHEYFSNFHQVDGHMNAHYNNYICYECGDTFVAASRLEKHVQVHSKGKFPCEECGKVFSLQKYRVKHFNLVHNKVTEIKCQFCPQKFSSTLLRHVHTVEEHKDQVKEYTCEYCGTVFNYKPYFLKHLQRKHSMNKKYKCEFCDKAFMKRYDLRVHMVRHTQNKKYVCTVCGESFKKKINFKHHFKIHQNAKGIQMTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193921;
- 90% Identity
- iTF_01193921;
- 80% Identity
- iTF_01193921;