Basic Information

Insect: Phlogophora meticulosa
Gene Symbol: -
Assembly: GCA_905147745.1
Location: LR990545.1:3742589-3743665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0039 0.35 12.1 0.8 1 23 39 62 39 62 0.92

2 9 0.0011 0.099 13.9 3.1 2 23 134 155 133 155 0.97

3 9 2.9e-06 0.00027 21.9 0.8 1 23 159 181 159 181 0.98

4 9 7.9 7.2e+02 1.7 4.5 1 14 186 199 186 213 0.90

5 9 0.002 0.18 13.0 1.6 2 23 217 239 216 239 0.95

6 9 1.4e-05 0.0012 19.8 3.7 1 23 246 269 246 269 0.97

7 9 0.0037 0.34 12.2 5.0 1 23 275 297 275 297 0.97

8 9 7.6e-06 0.00069 20.6 3.2 1 23 303 325 303 325 0.98

9 9 0.0041 0.38 12.0 2.9 1 20 331 350 331 354 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0039	0.35	12.1	0.8	1	23	39	62	39	62	0.92
2	9	0.0011	0.099	13.9	3.1	2	23	134	155	133	155	0.97
3	9	2.9e-06	0.00027	21.9	0.8	1	23	159	181	159	181	0.98
4	9	7.9	7.2e+02	1.7	4.5	1	14	186	199	186	213	0.90
5	9	0.002	0.18	13.0	1.6	2	23	217	239	216	239	0.95
6	9	1.4e-05	0.0012	19.8	3.7	1	23	246	269	246	269	0.97
7	9	0.0037	0.34	12.2	5.0	1	23	275	297	275	297	0.97
8	9	7.6e-06	0.00069	20.6	3.2	1	23	303	325	303	325	0.98
9	9	0.0041	0.38	12.0	2.9	1	20	331	350	331	354	0.95

Sequence Information

Coding Sequence: ATGCGAACTTTTAAAGAAACAGCCAAAAGAGAGATAGACAAACATTTAGAGAATATTCGAAACATACTCTTACATTCAAATGCTACTCCTATCAGAAGTCATACAGGTAATGGTTACTTGTGCGGCTTCTGTCCAGAGCACTTTACTATGCCGAGAGACCTCAAAATACATACGCTACAAAACCATGACAACAAAACTAAAAGCAAATACATGAAAGGTTATCCTTTAGTTTATTATGCCGTTAAACTAGACATCACTGGACTGAAATGTGAAATATGCGCACAAGATATAGATGGATTAGAACCAATGATGGATCATTTACAGTCTGTACACGACAAAGTTATACACAAAGACATCAAAAATCATATAATACCTTTTAAATTTGAAGGGGACACGTTACAATGCGTGCTATGCCCTAAAACTTACGACCATTTCAAGATGCTACACAACCATATGAACGTGCACTATGACAATTATAACTGTGATATTTGTAACTTCCCTTTTGTTAATAAGAGATCCCTTAAAAATCACATGGCTAGGCACAAACAAGGAGAGTTCTCTTGCAAGTTTTGTTTAAAAGTATTCGACACAAACGGCAAAAAACTATGCCATGAGAAATTCGTACATATTCTGAACCACAACAGGAACAAATGTCCGCATTGCGATGAGAAATTCAATTCTTACATACAGAGGAATGAGCATATGGTGAAAGAGCATGGTACAGAGCAACTAATCCACAAATGTATGGCCTGTGACAAGACATTTACTACAAAAGATAGATTAACTAGACATATAAAACGGGATCACTTGCTTGAGAGGACACACGAATGCCAGCACTGTGATATGAAGTTCTACGGTAAGAAACAACTGGGTTATCACATGTTAAAACATACAGGCGAAAAGCGCCATAAGTGCAACGTATGTTTCAAAGCTTTTGGACGGAAATATACTTTAAAAGAACATTTGAGAATACATGCGGATGATAGAAGATTCAAATGTCAACAGTGTGAGCAAGCGTTCGTGCAGAAATGCAGCTGGAAAAACCATATGTGGTCGAGACATCGTGAGCGGGTTTAG
Protein Sequence: MRTFKETAKREIDKHLENIRNILLHSNATPIRSHTGNGYLCGFCPEHFTMPRDLKIHTLQNHDNKTKSKYMKGYPLVYYAVKLDITGLKCEICAQDIDGLEPMMDHLQSVHDKVIHKDIKNHIIPFKFEGDTLQCVLCPKTYDHFKMLHNHMNVHYDNYNCDICNFPFVNKRSLKNHMARHKQGEFSCKFCLKVFDTNGKKLCHEKFVHILNHNRNKCPHCDEKFNSYIQRNEHMVKEHGTEQLIHKCMACDKTFTTKDRLTRHIKRDHLLERTHECQHCDMKFYGKKQLGYHMLKHTGEKRHKCNVCFKAFGRKYTLKEHLRIHADDRRFKCQQCEQAFVQKCSWKNHMWSRHRERV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -