Pmet024528.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990547.1:823688-840840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 14 7.1 0.6 1 23 59 82 59 82 0.95 2 12 0.24 22 6.5 1.5 1 23 90 112 90 113 0.93 3 12 0.39 36 5.8 1.2 1 23 116 138 116 138 0.93 4 12 0.00019 0.018 16.2 1.9 1 20 145 164 145 166 0.94 5 12 0.003 0.27 12.5 1.0 2 21 173 192 173 193 0.92 6 12 0.00029 0.026 15.7 0.6 2 23 209 230 208 230 0.94 7 12 0.0003 0.027 15.6 0.3 1 23 235 257 235 257 0.97 8 12 0.015 1.4 10.3 4.8 1 21 266 286 266 291 0.93 9 12 1.5e-05 0.0014 19.7 2.3 1 23 299 322 299 322 0.93 10 12 0.0032 0.29 12.4 0.4 1 23 328 351 328 351 0.95 11 12 0.0023 0.21 12.8 0.3 3 19 364 380 362 381 0.91 12 12 0.022 2 9.7 0.9 1 23 394 417 394 417 0.97
Sequence Information
- Coding Sequence
- ATGGACGGTACACAGATGGACTCTCCTAATCGACAGAAGTTTAAGAGTGACAAGAAGAGTAGGAAGCTAAAGAATCTTCCAGGAGACTTGGTAGAACTCTATGTCATGAGTAAAGAAGAAATGTGGGCGATAAGGATTGAGGATCTGAACAGCAAGGAGTTTCAGAAGCTCAAATATAGGTGTGATGATTGCATAATTGCCTTCAATACTGAGAAGTTGATGCACGATCATCTCAATGGAAAACATCAACGGAAAAGCGAAGACTGCCATCAGTGCTCAATATGCCAAGCCTACTTCCTGACCAAAGACAACGTCGCAGCTCACAAGGCGTTACACCACCAGGGCTATAGATGCAGGGAGTGTGGCTTCAACACTTCGCTGAAACGGCGTATGTTGAAGCATGTCGGCAGTCACGCAACGAGCGGAGATGCCCACGTGTGTCATACTTGTGGGAGTAGCTTCAGCACAAAATCGAAGCTAACATACCATCGCGGCGTTTGTCGCCAAGAGAGACCGCAGTGCGATTGTTGCGGGAAGGTATTCGCCAACAAAATGACTCTCAAGTATCACTTGAAAATCCTGCCCCAGAACAAGGATGATAAACCCAAAGAGAAGCTGTTCATACCATGTAAGGGATGCGATAAGATATTCCACTCTAAGAAGAGCTACAGAGCGCATGTCGTCATCCACGACGGCCTAACCTACCCGTGCCCGATCTGTGGTAAGCTGTTCCAATGGAAACGGAACCTGGCGCGCCACTCGCGCAACCACCGCGAGCGCGAGGCCGGCAACCTGCACGAGTGCCGCGCCTGCAGCAAGACCTTCGCCAGCCGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTCTCCCAGGATACGTACCAGCATGAGTGTAACTACTGTGGTAAGAAGTTCGCTACGAAATGGTGCCTCACAGACCATATTGACTGGGATCATCTGAAGAGGATCAAGTACCAATGTAGTTTCTGTTTCAAGGCATTCAAAACGGCTAAGATATTGGTAGCTCATGTCAATAATATACACGAGGGCAAGAAAAAAGAACCAGACGGTGAACATCTGTGTGAAATATGTGGGAAGTCGTACAGGACTGCAAAACGGTTAAAAGGTCACGTCTGGGCGATGCACACAAAAAGGTCAAGCAATAAAATATACAAGTGCAAGCTGTGTCCCGCGACCTTCATGTGGCAGACCAGCATATACAAGCATATGAAGATGATGCACGATAATAATAAGAAGGCGAAGTCCCCTCGCACGGTACCACCGGTGAAGAAAGAAGACCCCTACCCGGGAATCGAACTGGCGAACCGAATGCAGTATTTCCAACAGAACATTGGTGGCAATATTAATATAGTACATATACAACCCTTAGAGATTACTCAGAATATTGTTTAA
- Protein Sequence
- MDGTQMDSPNRQKFKSDKKSRKLKNLPGDLVELYVMSKEEMWAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQRKSEDCHQCSICQAYFLTKDNVAAHKALHHQGYRCRECGFNTSLKRRMLKHVGSHATSGDAHVCHTCGSSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKIFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHREREAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKRIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEPDGEHLCEICGKSYRTAKRLKGHVWAMHTKRSSNKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKAKSPRTVPPVKKEDPYPGIELANRMQYFQQNIGGNINIVHIQPLEITQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726786;
- 90% Identity
- iTF_01027700;
- 80% Identity
- -