Pmet012236.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990545.1:3260243-3261817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.094 8.6 7.8 0.1 2 23 77 99 76 99 0.94 2 12 0.021 1.9 9.8 0.4 1 23 122 145 122 145 0.97 3 12 3.2e-05 0.0029 18.7 0.5 2 23 169 190 168 190 0.97 4 12 0.053 4.9 8.5 0.5 1 21 194 214 194 215 0.92 5 12 0.33 30 6.1 0.1 1 23 256 279 256 279 0.95 6 12 0.23 21 6.5 0.1 2 23 305 327 304 327 0.95 7 12 0.0026 0.24 12.7 0.3 2 23 351 372 350 372 0.94 8 12 1.9e-05 0.0018 19.4 0.0 1 23 376 399 376 399 0.97 9 12 0.014 1.2 10.4 0.5 1 23 403 426 403 426 0.98 10 12 1.5 1.4e+02 3.9 0.4 1 23 431 456 431 456 0.87 11 12 0.039 3.5 9.0 5.6 1 23 465 488 465 488 0.88 12 12 0.00074 0.067 14.4 0.2 1 23 498 521 498 521 0.96
Sequence Information
- Coding Sequence
- ATGCCATTCTTTCCCCGAAGACAAGAAGCTGTACTAGAATATAATAATGATGAAAACTTTTCTTTTTTAGGGTCCACAAAGGATATTGACGGACTTAATCAAACCGAAAGTAAACCAAAACAAAGATTGTTCGAAAGGTCCGTTGGACAGAACCCGCAAAGGCAAAATGCTGTTCTTGTCCTAAAGCACTCGACAGCGTTCCCTTTTAAGACGCGTTTTAATAGGATTGTCTGTTCGTACTGCCATGACGAGTTTGAGCCAATGGCTGCGTTGAGAGAGCATATGAAAGCCGACCATTCAACTGCTGACTACAACAGCGCTTTCTATAAAGTCTACGATGCCCTAAAAGTTGAAATTACTGATTTTAAGTGCACCATGTGCTCCCAAGAACTACCGAATATAGACAGTTTCATGACCCATATATCTCGTGACCACAAAATCAAAGTAAACTTTGACGTTCCTTTTGGAGTACTACCTTATCGACAAGGACCTTCCGGGAGATGGACGTGTCTTGAATGTGATAAAACTTTTCCTAAATTCTCACAAATCAACGTCCATTTAAGAACCCACATGAAGATTTTCACCTGTGAAAAGTGTGGTGCCACATTTCTATCAGATCACGGATTGAGACAACACGAACGTAATTTTAAATGTTACAAGTCTTCCTATAATCCTCGTTTTGGTAAAGCCTTGAAATATAAAAGCAATACTGAGATTATTCTAGAATGTTCTACCGCCTGTCCTTTCAGGACTTGGGGCCAGAATTTCAACTGCGTCTTCTGTCGGGTACAATCAAACGATCCTATTGGTTTGAGGGCTCACATGGCGTCACGACACGCGAATTTCGATATACAGCTAGTATTTAGTAGAAAAATAAGAAAGGAGTTCTTGAAGGTTGATATTACAGATCTGCAGTGCAAACTGTGTTTTATACCCATCGATACTTTAGACGAGCTAATGCTACATTTGAAGAATGACCACAAACAGCCCCTGAACGCTGACGTCCAACCAGGGGTCCTTCCGTTCAAACTAAATGATGGTTCTAGTTGGAAATGTGCAATATGCAAGATACAGTTCTCAGACTTCATATCTTTAAAGAAACACACGGCGGAACACTACCAGAATTACGTTTGCGATACTTGCGGTGAGGGTTTCATAACAGAATCTGCTTTAAAAGCCCATGCGAAAATACCCCACGATAACAAATACTCGTGCAGTCGTTGCGTTGCTAACTTCTCTACTTTGGAAGAGCGGAACATCCATATCAAAACCCAGCACACGGCGCTACCTTACATCTGCGTGTACTGCAAAGAGAAGCCTAGGTTTGCGACCTGGGAGCTCAGAAAGCGACATCTCATGGAGTTCCATAATTACAAGCCCGGAGCCGAAATGTATGAATGTACAACTTGTCATATGACATTTAAGACCCGATCGCAGAAGTACCACCATAATGTGAGAGCTCATCGGACGAAGAAAGAGACGGAATATAGTTATCCGTGTGGCAATTGTTCTAGAGCGTTCGCTTCCAAATTGTCTTTGGACAAGCATATCGCTAAGAAGCATTTCCATGTATAA
- Protein Sequence
- MPFFPRRQEAVLEYNNDENFSFLGSTKDIDGLNQTESKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALREHMKADHSTADYNSAFYKVYDALKVEITDFKCTMCSQELPNIDSFMTHISRDHKIKVNFDVPFGVLPYRQGPSGRWTCLECDKTFPKFSQINVHLRTHMKIFTCEKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFIPIDTLDELMLHLKNDHKQPLNADVQPGVLPFKLNDGSSWKCAICKIQFSDFISLKKHTAEHYQNYVCDTCGEGFITESALKAHAKIPHDNKYSCSRCVANFSTLEERNIHIKTQHTALPYICVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVRAHRTKKETEYSYPCGNCSRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072961;
- 90% Identity
- iTF_00123700;
- 80% Identity
- -