Basic Information

Insect: Phlogophora meticulosa
Gene Symbol: -
Assembly: GCA_905147745.1
Location: LR990545.1:3343734-3355116[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.011 0.99 10.7 1.8 1 23 351 372 351 372 0.91

2 18 0.32 29 6.1 0.1 2 23 398 419 397 419 0.95

3 18 0.073 6.7 8.1 2.7 2 23 442 463 441 463 0.96

4 18 0.00017 0.016 16.4 0.8 1 23 467 489 467 489 0.96

5 18 0.008 0.73 11.1 0.6 1 23 494 517 494 517 0.91

6 18 0.041 3.8 8.9 0.2 2 23 525 547 525 547 0.93

7 18 0.00082 0.075 14.2 1.6 1 23 554 576 554 577 0.95

8 18 0.00045 0.041 15.1 2.3 2 23 584 605 583 605 0.96

9 18 0.00033 0.03 15.5 0.7 1 23 611 633 611 633 0.97

10 18 0.21 19 6.7 0.7 1 23 773 796 773 796 0.96

11 18 0.0039 0.35 12.1 2.6 1 23 818 840 818 840 0.97

12 18 0.00063 0.058 14.6 3.0 1 23 844 866 844 866 0.97

13 18 0.0033 0.3 12.3 2.1 1 23 871 894 871 894 0.97

14 18 0.072 6.6 8.1 2.6 2 23 902 924 899 924 0.90

15 18 4.6e-05 0.0042 18.2 0.4 1 23 931 954 931 954 0.97

16 18 0.035 3.2 9.1 5.0 1 23 960 982 960 982 0.97

17 18 6.3e-05 0.0058 17.7 0.9 1 23 988 1010 988 1010 0.99

18 18 0.23 21 6.5 3.8 3 23 1017 1038 1015 1038 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.011	0.99	10.7	1.8	1	23	351	372	351	372	0.91
2	18	0.32	29	6.1	0.1	2	23	398	419	397	419	0.95
3	18	0.073	6.7	8.1	2.7	2	23	442	463	441	463	0.96
4	18	0.00017	0.016	16.4	0.8	1	23	467	489	467	489	0.96
5	18	0.008	0.73	11.1	0.6	1	23	494	517	494	517	0.91
6	18	0.041	3.8	8.9	0.2	2	23	525	547	525	547	0.93
7	18	0.00082	0.075	14.2	1.6	1	23	554	576	554	577	0.95
8	18	0.00045	0.041	15.1	2.3	2	23	584	605	583	605	0.96
9	18	0.00033	0.03	15.5	0.7	1	23	611	633	611	633	0.97
10	18	0.21	19	6.7	0.7	1	23	773	796	773	796	0.96
11	18	0.0039	0.35	12.1	2.6	1	23	818	840	818	840	0.97
12	18	0.00063	0.058	14.6	3.0	1	23	844	866	844	866	0.97
13	18	0.0033	0.3	12.3	2.1	1	23	871	894	871	894	0.97
14	18	0.072	6.6	8.1	2.6	2	23	902	924	899	924	0.90
15	18	4.6e-05	0.0042	18.2	0.4	1	23	931	954	931	954	0.97
16	18	0.035	3.2	9.1	5.0	1	23	960	982	960	982	0.97
17	18	6.3e-05	0.0058	17.7	0.9	1	23	988	1010	988	1010	0.99
18	18	0.23	21	6.5	3.8	3	23	1017	1038	1015	1038	0.95

Sequence Information

Coding Sequence: ATGTCGACGGAAAAAACTGAGATAGAGATGTTTTTCGGTAGATGTAGGTGTTGTCTCTCCTACGGCTACTTAAAAAACATGTGGGCAAAACATAAATTCCAAGGAGAAGCAGAAATATACGGCGAGATGCTTGTCCAATGTTTTGCACTGACGTGGGATCATGAATCAGAGGATTCGATGGAACAAGATCAGATATGCGAGCAGTGCATCAGTCGGTTGCGAGATGCAAGCGACTTTAAGAGGGTGGTCCTGGATTCACAAGAGGAGCTGTTGCAGCAAATGGATGCTGAAAACGACTCGGAAGTCAAAGAGGAAAGGTTAGATGAAGAATTCGTCACGGAGTACAAAATTGACAGTGTAGGTGACACTGCTGACACCATGTACGCAGACACAGAATTCACTATGGACACTGCGGACACTATGCAGAGTTTCAAAGATGAGACGGAGTATGAGGAGGTTGAGTATCTGGATGATGAAGACCCTGGAGGAGCTAAGGTTGCCTTGGATGTCTTTGACTCCTCACTACTATCAGATCGAGTAAAACAAGTGAAGCGCCGAAAACAACCTCGTAGACCCGAGCCGGTGGATGAAGATGGAAAAAAGCGGAAGTGGCCCAAAAAGTTACCGAAATCGGAACGCCAGAAGACATACAAACAATACTCCGAGGGTGATCTGCGGAAATGTCTGGAGGAGGTCAGGAATCAGGTGCTGACGCCTGCTGAAGCGGCTTTGAAATACGATATACCGAAGAAGACCATATGTGCCAAGAGCAAAATGGCACCCAGCGATGTCGGGACAGACATCCAGAACTCTACAAATAACACAACTACTAGCAAATGTGTGAAAACGAGGCAAACGAAGATACCAACACTAACAGACGAAGACGCAAAAGAGACGGAATCAGAGACAGAAAGCCAGGACGTACCAAACGCGGCGTTACGGGAGAAAGCCGAAGTAAACAGATACCAAATGCTCAAACACAAGAATAATCTCAAAACGATACTTAAATATTCTAACGCTACATTGATAAAGGGACACTCATCAGCTGGATACGCTTGCAGCTTCTGTGATAAACATTTTGATCCTGAAACACTAAAAAAACATAATATTGATCATGGCGATATTTACGATGATGCTATAAAAGTAAAGTTCGTTTCGGATCTCATAATAAAACTAGACGTCACTGGACTTAAATGTAAGCTTTGCGAAAGAGACATAGACAGTCTTGAAGCACTGATGAGCCATTTACAAGATCATGGTAAAACTATTCATACGGACGTGGATAACCATTTTATACCTTTCAAATTTGATACGGAGGTGTTACGATGCGTCATTTGCGCCGCAAGCTTCAAACATTTCAAGTTACTCTCTGAACATATGTGCGAACATTACGGTAACTTTAAATGTCCGGAATGCGAGCGAGTGTTCATAAACAAGCAGTCGATGCAAACACACGGCTATAGACACAGGAAAGGAGAATACAAATGTTCACAATGTCCAAAGATATTCGACAACCGTGTAAAAATACGTGAACACGAATATGTCACTCATAAACTTTTAAATAGAAAGAGGAAATGTGGGTTCTGTGACGAGAGATTTACGTCAGTAGACTTGGTAAGGAATCACGAAGCTAGAATACATGGCTCCGTCCGTTCTAAGTTCATTTGTGAAGCTTGTAACAAGCCTTTTGTGAGCAAGAAGGGCCTCGCAACACATAAGAAGAGACACCATCTATTGATGCGTCCTTTAGAATGTACAACATGTCATAAGGGTTTTTATACGCGGCAAGAGCTCAAATGGCATACCGTAACGCATACAAAGACCAAGGAATTTCATTGCACTGAATGTGGTAGCTCGTTTGGCACTAAACCGGCGCTTAGTCAACATCTAAGGGCACATACAGATGTCCAGATTGACAATACAACGAAATCCAACAGTATAATGAATCTAAGGAAAAGACCCAGTGCCTCTGAAATCGAAACCAGGGTTACAGAAACAAAAACAGATCGCAGATCGAGAGAAGCGAAATTAAACGCTCAGGAAGAAATCCATAATATGAAAGAGCCAACGACATCAGATGATCAACGTTTTATGTACAAACACAAAACTAATATAGAAGCTATATTACAACACTCCAATGCAACGCTCATAAAGGCACACGGAAGAGAAGGATTTTCATGCAATTTCTGCGACTTTCAGGCTGGAATTCCTTTTGTATTAAAGGAACATAATCTAAAAAAACACGCCAATGTAAAAGATGAAGCTATCAAAACAAAATATGTGACAGAATTAATCATCAAGTTAGACACAACAGATTTTAAATGCAAGCTTTGCAAACAACCTATGAATACATTAGAAGAATTCATGGAACATCTAAGTAAAATACACTCCAAACTTATTTATACAGACGTCAAAAATCATATAATACCTTTCAAATTCGAATCCGATGACTACCGATGCTTCATGTGTGATACAAAATTTAAATATTTCAAACTACTCTCTGAACATATGACCGCACATTATAGAAATTTCGACTGTACCGTTTGCGATCAAACTTTTATCAACAAACAGTCCATGCAGACCCATTTGCATAGACACAATAAGGGGGTGTTTAAATGCTCTCATTGCCCCAAAGAGTTCAATTCTCGACCGAAACGCGTCGACCATGAAAGAACTGTACACGTAATATCTGGCAAATGTAAGAAATGTGCACACTGCGAAGAGCGGTTCACGTCATGGGAGTCCGTTTTTGACCACGAACTGAACGCCCATGACGTGGAGAAACCCACGTACTCATGCGAAGACTGTGGAAAGATTTTGAGTTCATCAAGTGCTTTATCAATGCACAGAAACCGGTTCCATCTCTTTAAGAAACCTCACAAATGTACGTCTTGCGAAATGGCCTTCTGCACGAAAATGGAGTTGACCTATCATACTGTAACTCATACAAGAACTAGGAATTATAAGTGTAAGGTTTGTAAGAAGGCTTTCGGTACGCCGGCTATTTTGCACGCGCATATGAAGACGCATAGAGGAAAAAAACTCTTCTGCGATTTCTGTGACCACAGGTTCCGAAGCAAAACTATTTTTAGTTCACATATGAGAGAGACGCATGGAGAAATTGTGTAA
Protein Sequence: MSTEKTEIEMFFGRCRCCLSYGYLKNMWAKHKFQGEAEIYGEMLVQCFALTWDHESEDSMEQDQICEQCISRLRDASDFKRVVLDSQEELLQQMDAENDSEVKEERLDEEFVTEYKIDSVGDTADTMYADTEFTMDTADTMQSFKDETEYEEVEYLDDEDPGGAKVALDVFDSSLLSDRVKQVKRRKQPRRPEPVDEDGKKRKWPKKLPKSERQKTYKQYSEGDLRKCLEEVRNQVLTPAEAALKYDIPKKTICAKSKMAPSDVGTDIQNSTNNTTTSKCVKTRQTKIPTLTDEDAKETESETESQDVPNAALREKAEVNRYQMLKHKNNLKTILKYSNATLIKGHSSAGYACSFCDKHFDPETLKKHNIDHGDIYDDAIKVKFVSDLIIKLDVTGLKCKLCERDIDSLEALMSHLQDHGKTIHTDVDNHFIPFKFDTEVLRCVICAASFKHFKLLSEHMCEHYGNFKCPECERVFINKQSMQTHGYRHRKGEYKCSQCPKIFDNRVKIREHEYVTHKLLNRKRKCGFCDERFTSVDLVRNHEARIHGSVRSKFICEACNKPFVSKKGLATHKKRHHLLMRPLECTTCHKGFYTRQELKWHTVTHTKTKEFHCTECGSSFGTKPALSQHLRAHTDVQIDNTTKSNSIMNLRKRPSASEIETRVTETKTDRRSREAKLNAQEEIHNMKEPTTSDDQRFMYKHKTNIEAILQHSNATLIKAHGREGFSCNFCDFQAGIPFVLKEHNLKKHANVKDEAIKTKYVTELIIKLDTTDFKCKLCKQPMNTLEEFMEHLSKIHSKLIYTDVKNHIIPFKFESDDYRCFMCDTKFKYFKLLSEHMTAHYRNFDCTVCDQTFINKQSMQTHLHRHNKGVFKCSHCPKEFNSRPKRVDHERTVHVISGKCKKCAHCEERFTSWESVFDHELNAHDVEKPTYSCEDCGKILSSSSALSMHRNRFHLFKKPHKCTSCEMAFCTKMELTYHTVTHTRTRNYKCKVCKKAFGTPAILHAHMKTHRGKKLFCDFCDHRFRSKTIFSSHMRETHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -