Basic Information

Insect: Phlogophora meticulosa
Gene Symbol: ham
Assembly: GCA_905147745.1
Location: LR990535.1:6632695-6654472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.097 8.9 7.7 0.0 2 23 91 113 90 113 0.96

2 9 0.00076 0.069 14.3 0.8 1 23 120 143 120 143 0.93

3 9 1.6e-08 1.5e-06 29.1 0.1 1 23 149 172 149 172 0.96

4 9 1.4e-06 0.00013 23.0 1.7 1 23 178 200 178 200 0.95

5 9 0.00015 0.014 16.6 5.2 1 23 206 228 206 228 0.99

6 9 0.00038 0.035 15.3 1.3 2 21 236 255 235 256 0.94

7 9 1.2e-08 1.1e-06 29.5 0.7 1 23 653 675 653 675 0.98

8 9 4.2e-07 3.9e-05 24.6 1.7 1 23 681 704 681 704 0.97

9 9 1.6e-05 0.0014 19.6 3.2 1 23 710 732 710 732 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.097	8.9	7.7	0.0	2	23	91	113	90	113	0.96
2	9	0.00076	0.069	14.3	0.8	1	23	120	143	120	143	0.93
3	9	1.6e-08	1.5e-06	29.1	0.1	1	23	149	172	149	172	0.96
4	9	1.4e-06	0.00013	23.0	1.7	1	23	178	200	178	200	0.95
5	9	0.00015	0.014	16.6	5.2	1	23	206	228	206	228	0.99
6	9	0.00038	0.035	15.3	1.3	2	21	236	255	235	256	0.94
7	9	1.2e-08	1.1e-06	29.5	0.7	1	23	653	675	653	675	0.98
8	9	4.2e-07	3.9e-05	24.6	1.7	1	23	681	704	681	704	0.97
9	9	1.6e-05	0.0014	19.6	3.2	1	23	710	732	710	732	0.98

Sequence Information

Coding Sequence: ATGTTGCCACAAGAGAAGGGAAACTGGCTCAAACTGGTGCGCTCCACCAACTTCTCCCATGATATCAACGTACAACACCTCTTGTTGGCTGGACAGGTGTGGTACAAAGTTATCCAGGAGGTGCCTTCTGGCCAGGAGTTGCTTCTGGGACCAAAAACACCTATCTACCTGGAGGATGTGCTCTCTTTGGACTCAAAGCGTCAGTCTTCTATTGAGAAGTTCAGTTCTCTGACATCAGCAGATGACGAGGAGAGAGAGGACGCCGACATCCGCTGCAGCTTTTGCGAACTGCCCTTCCCTAACATCGATGTTCTCGATCGCCACTTGATAACGGAGCACGCCCAGCCGGCCGCTGCATTTCATTGTGAACTCTGTAACAGAGCTTACAGCACTCGGGTATTGCTCCTGCGACACCGTGCGCTTGCGCATACCGACATCAGAAAGTACCCCTGCGAGAACTGTCCCAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCGCAGCACGCGGGAGCCCGCAGCCACGCTTGCCCTGAATGCGGGAAGACCTTCGCTACCTCCTCCGGCCTGAAGCAGCACACACACATACACTCCAGCGTCAAGCCCTTCCAGTGCCTGGTTTGCTTTAAGGCTTACACCCAGTTTTCCAACCTGTGCCGTCATAAGCGGATGCACATCGCTTGCAGAGCTGTCTCCGAATGCGGGAAATGCGGACAGTCCTTCACGTCTCACGCCTCTCTTAGCAAGCACAAGAGATTCTGTGACACCGCTGCCGCAGCTTCGGTCAACCTTCGAGGGCAGATGCCCCAGGGCCTTCCGCAAATATCGTCACTACAAAACGTCGGGATGAATAACCATAACAACACAAACCCGTTCCCGATGTACAGGGGACACACACTGCCCCTGCCATACAATACTTTTGCTCACTACCCGGCGCTGTTCTCTGCCGCCGCCGCTGCTGCCTGCCCACCCGAGTTCCTGAGTCCATTGCTCTTCAACGTACAAGGGGCAAGACTCGCAATGGAACATGACATGGCAATGTCAAATGCCAATTTGATGTCCAAGCAGCAGGAGGGACGCCTATCAGTAAAAAGCATGGATAGCTCAAACTCTTTAGACGATAACAAGAAGCCTAAGGATTTGGATTTCGAAAACAAAAGAGACAGCTACAGTTCTGATAGGGCTACGCCCAATAAATCACATAGTCTTTACTCTAAGCAATCGCCTCCTTCTGGAGAGGAAGCATCTTCTCAACGGCGACCATCCCCAGTGATGCCATTGCCTACACCGATTGCTCCATTCAGTTTCTCAAGAGACGAAATGAAGAGGAAGTCTCCGTTCAACTTCTCTCTCAAACTCAATAATAATGACATCCAGGGTAACAAGTCCCTATCACCAGTACCTAAAGACTTGTCCAAGAATGTAATGGAAGACGATAAAACTTCTGAATATTCAGACGTTGACGAAGATACAAAGAAAGACGAAGGAGACCAGCCCTTGGATCTATCAGTGTCGAGGAAACAGACCGATAAGGGTTCTGAACCAGAGAATGATGATCGTTCCTTTCGCAACTCAGTCAAGTCGTATTCACCACCTGAAAGCCCAGTTGAGAGAAGCAAGACTCCTGAAAATGACACGACAGACGTCGATGTAGAAGGCGTAGAACCTAAAAGGGAGGAACCAACAATGCAGCTAGTATCACCACCTCTCGCGTTCCCCATGCCCGTTCACCCGCAGCACAGCAACTTAATCGAAGCCATGTACCGGCCTCGATTCCCAGCATTCCACACTTCCGAATCGCTTCTGAATTCTTCGCACTCTCCGTATGTTCCAAGCCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGATAGGCAACCAAGCGCGTATGCGAAGTTTCAAGAGCTTAGTTCTGGTTCAGGAAAGCTGCGTGACCGGTACGCTTGCAAGTTCTGTGGAAAAGTGTTCCCAAGGAGCGCGAACCTGACTCGTCACCTGCGTACCCATACTGGCGAGCAACCTTACAAGTGCAAGTACTGCGAACGCTCGTTCTCAATCTCATCAAACCTTCAGAGGCACGTGAGGAACATTCACAACAAGGAGCGGCCCTTTCGGTGCCCCTTGTGCGAAAGATGTTTCGGGCAGCAGACTAACCTCGATCGTCACTTGAAGAAGCACGATACGGAAGGTGGAGATTCTCCTAGCTCTGCGGATACTGAGAGGGAGGATGCGTATTTTGATGATATCCGTTCGTTCATGGGTAAAGTGACGTGCTCCCCGAGTGCACGCTCCCCGGCCGCGACACCCCCGCACGGCGCGCACGGGGCGCACGGGGCGCACGGGGCGCACGGAGCGCACGGGGCGCACGGAGCGCACGCTGCGCACCCCGCGCACGGCCCGCGCCCCTCACTCGCCATCTCCACATAG
Protein Sequence: MLPQEKGNWLKLVRSTNFSHDINVQHLLLAGQVWYKVIQEVPSGQELLLGPKTPIYLEDVLSLDSKRQSSIEKFSSLTSADDEEREDADIRCSFCELPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCLVCFKAYTQFSNLCRHKRMHIACRAVSECGKCGQSFTSHASLSKHKRFCDTAAAASVNLRGQMPQGLPQISSLQNVGMNNHNNTNPFPMYRGHTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLMSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFENKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLPTPIAPFSFSRDEMKRKSPFNFSLKLNNNDIQGNKSLSPVPKDLSKNVMEDDKTSEYSDVDEDTKKDEGDQPLDLSVSRKQTDKGSEPENDDRSFRNSVKSYSPPESPVERSKTPENDTTDVDVEGVEPKREEPTMQLVSPPLAFPMPVHPQHSNLIEAMYRPRFPAFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHDTEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPSARSPAATPPHGAHGAHGAHGAHGAHGAHGAHAAHPAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449488;
90% Identity: iTF_00449488;
80% Identity: -