Basic Information

Insect: Phlogophora meticulosa
Gene Symbol: -
Assembly: GCA_905147745.1
Location: LR990525.1:10475785-10484049[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.063 5.8 8.3 6.6 1 23 231 254 231 254 0.97

2 12 0.045 4.1 8.8 2.5 1 23 261 283 261 283 0.95

3 12 0.0017 0.15 13.3 0.3 2 23 290 311 289 311 0.97

4 12 4.1e-06 0.00038 21.5 0.3 1 23 317 339 317 339 0.98

5 12 3e-05 0.0027 18.8 0.4 1 23 348 370 348 370 0.96

6 12 2.5e-05 0.0023 19.0 1.5 2 23 377 398 376 398 0.96

7 12 0.0021 0.19 13.0 7.4 1 23 404 426 404 426 0.98

8 12 3.3e-09 3e-07 31.2 1.0 1 23 432 454 432 454 0.99

9 12 8e-06 0.00073 20.6 1.4 1 23 460 482 460 482 0.98

10 12 9.5e-06 0.00087 20.3 1.0 1 23 488 509 488 509 0.98

11 12 9.7e-05 0.0088 17.2 1.3 1 23 515 537 515 537 0.98

12 12 0.00027 0.025 15.7 1.3 1 23 543 565 543 565 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.063	5.8	8.3	6.6	1	23	231	254	231	254	0.97
2	12	0.045	4.1	8.8	2.5	1	23	261	283	261	283	0.95
3	12	0.0017	0.15	13.3	0.3	2	23	290	311	289	311	0.97
4	12	4.1e-06	0.00038	21.5	0.3	1	23	317	339	317	339	0.98
5	12	3e-05	0.0027	18.8	0.4	1	23	348	370	348	370	0.96
6	12	2.5e-05	0.0023	19.0	1.5	2	23	377	398	376	398	0.96
7	12	0.0021	0.19	13.0	7.4	1	23	404	426	404	426	0.98
8	12	3.3e-09	3e-07	31.2	1.0	1	23	432	454	432	454	0.99
9	12	8e-06	0.00073	20.6	1.4	1	23	460	482	460	482	0.98
10	12	9.5e-06	0.00087	20.3	1.0	1	23	488	509	488	509	0.98
11	12	9.7e-05	0.0088	17.2	1.3	1	23	515	537	515	537	0.98
12	12	0.00027	0.025	15.7	1.3	1	23	543	565	543	565	0.97

Sequence Information

Coding Sequence: ATGGATTTGCAAACTATAGTAGACACCACAAAAATAGATCAAGAAGAGAAAGCAACCAGAGAAGACTACATTGAAATAGAAGTTCCTTACAACGTGTACCACTACCTTAGTTCAGACCAATGCAATGTTCAAAACATGTGTCGAATATGTCTCACTACAGATAACGAGGTATTATACCCGTTACTTGCTGCCAAAGAAACCAATATCTTAGCTCATATGTTTATGGCGTTTACTACAGTTCAACTGTTTCCAGAAGATGGTTTGCCATCAAGTATATGTGAGCTGTGTCAGGCTCAAGTTGTGCAGAGCTATGAGTTCAAAATCAAATGCGAGAAGTCAGAATGCATGCTCAAGTCAATACTGAAAGGAGAATTCATAAGCAAAGAGGAACTACCTGATCATAGCATGGAAATAAAACAAGAAAAAGCGGTGGATAATAATAATGGTGATCATAGCGGCCCTATTTATATTAATGATATTGATATCAAGCAAGAGCCGCAACTGCTGGAAGATGTACAATATTTAGAAGATCTCAGTGGTAACTATGAAAGTGGTAACATTTGTATAGTACAAAAAGCGGAAAGGTGTAAGAAAAAAAAAAAGATAATTAATGACGATGATGAATCAGTCAAACTTCTAAAAGTTTCAAATAAAAAACCCAGAAGAAAACACGGAAATAAAGTAAATACGTTCACCTGCAAGTTTTGTTCTAAGAAATTCCAAAATGTGAAGACATTCCATGCGCATTTGAAGAGCAAGCATCCAAACACCAGACATCTACATTTCTGTAACCAGTGCTCCGAACTATTTAACTCTGAGCATGATCTTAAAGTACATGCATCTATACACGCTAAAGGAAACATTTGGAAGTGCAACCAATGTCCTAAAGAATTTAGTGCGCGCGCGATACTCCGTCGCCACATCTCGCGACACATGCAGTCGAAGCGCTTCACGTGCGAAGTGTGCAGTAAGGCGTTCACGGAACTGTACGCTTTGAGGAGACACGTGCGCGTTCACACCGGCGAGACTCTCGAGAAGAAACATGCCTGCACTATATGTGATAAGAGGTACAGTGAGAGCGGTCTCCTGGCAGCGCACATGTCCCGCCACATCGGACTGCGCCCATGCGAGTGCAATATTTGCGGCAAACGGTTCCCATCGAACCGCCTGCTCTCGTCGCACCGACTTGTCCACTCTGATCGCAAGCCGTACGCCTGCCAGTACTGCGAGAAACGTTTCCGTCACGAGTCGACACGCAACACTCACCACCGAACACATACTGGAGAGAAACCTTACGTGTGCTCCACCTGCGGGAAGAGCTTCATACAGAACTCCAACCTCACGCTGCATATGAGGACACATACTGGCGAGCGCCCATACACATGTTCGACATGTGGTCGCAAATTCACTTCAGGGTCTACACTCAAAAGCCACGAACGGATACATTCTGGAGAACGGCCTTTCAGCTGTGATATTTGTGGGAATAGTTTCACGCGCAAGAACTTGAGCGCTCACATGCGCAAGCACACGGGCGAGCGTCCGTACGAGTGCGGCGTGTGCTCCAAGAAGTTTGCCAACGCCACGCGCCTCCGGGACCATCACCGCGTACATACGGGTGAAAAACCATTTGACTGCTCAATGTGCGCACTAAAGTTCGCTACAAAATCTCAACTGTTAAAACACTCCAAAACCCACCAAAAAAAGAAAAGAGCACTTCCGGTCTCAGACACAGACAGAGAGCGACACCGTGACCGTGAAAACCGTGAACTAGTCATATTGCAAAATGTTGAATCCGTACCAGTCATTACCGATAGAATTATGTTTAATAAGGAACATGGTGAACTAATAACAGTCAATGAAAATGTGCCCGCTGACGAGTCGCCGGAAGATCAAACCAATGAACTGACACTTAACATAGTAGAAGAAGTCCCAATAGAAGTAACAGGAGAATTAGTACTACAGGAAGATAATAACTTGAAAGGAGACCTTTTAGTAGTTGATAATAGCCAAAGTAATAACTACCAAGGTGATAGTATATGCTTGAATACTAACAACGTGAATCTCATCGACGACGTGAACTACGACGGCGATATGGACTTGGTGACGGTGAACGAGGGCGGTGTCAGCATTGCGACCGCGAGCCTCGAAGGAACGACAGTGAAACTGTACCAGTTAGATCAAAGTCTAGTGCAAATACACAGCTCCGGCGGACAAGTCACTATTAGTAAGATAACTAGCAAAATGACTGCTAACTTTTAA
Protein Sequence: MDLQTIVDTTKIDQEEKATREDYIEIEVPYNVYHYLSSDQCNVQNMCRICLTTDNEVLYPLLAAKETNILAHMFMAFTTVQLFPEDGLPSSICELCQAQVVQSYEFKIKCEKSECMLKSILKGEFISKEELPDHSMEIKQEKAVDNNNGDHSGPIYINDIDIKQEPQLLEDVQYLEDLSGNYESGNICIVQKAERCKKKKKIINDDDESVKLLKVSNKKPRRKHGNKVNTFTCKFCSKKFQNVKTFHAHLKSKHPNTRHLHFCNQCSELFNSEHDLKVHASIHAKGNIWKCNQCPKEFSARAILRRHISRHMQSKRFTCEVCSKAFTELYALRRHVRVHTGETLEKKHACTICDKRYSESGLLAAHMSRHIGLRPCECNICGKRFPSNRLLSSHRLVHSDRKPYACQYCEKRFRHESTRNTHHRTHTGEKPYVCSTCGKSFIQNSNLTLHMRTHTGERPYTCSTCGRKFTSGSTLKSHERIHSGERPFSCDICGNSFTRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSMCALKFATKSQLLKHSKTHQKKKRALPVSDTDRERHRDRENRELVILQNVESVPVITDRIMFNKEHGELITVNENVPADESPEDQTNELTLNIVEEVPIEVTGELVLQEDNNLKGDLLVVDNSQSNNYQGDSICLNTNNVNLIDDVNYDGDMDLVTVNEGGVSIATASLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00375561;
90% Identity: -
80% Identity: -