Pmet018915.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- LR990519.1:3860458-3866324[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0036 0.33 12.2 3.6 1 23 187 209 187 209 0.98 2 29 0.00028 0.026 15.7 0.8 2 20 238 256 237 258 0.93 3 29 6.2e-05 0.0057 17.8 0.1 2 23 289 311 288 311 0.96 4 29 8.5e-05 0.0078 17.3 1.2 1 23 361 384 361 384 0.97 5 29 0.041 3.8 8.9 0.5 1 23 403 425 403 425 0.95 6 29 0.0014 0.13 13.5 3.6 1 23 465 488 465 488 0.95 7 29 0.0035 0.32 12.3 1.9 2 23 528 550 528 550 0.97 8 29 0.00079 0.073 14.3 1.0 1 23 600 623 600 623 0.97 9 29 0.0038 0.35 12.1 0.2 1 23 675 697 675 697 0.97 10 29 0.025 2.2 9.6 8.7 1 23 708 730 708 730 0.98 11 29 0.01 0.95 10.8 0.3 2 23 742 763 741 763 0.96 12 29 0.0028 0.26 12.6 1.4 1 23 773 795 773 795 0.98 13 29 0.0029 0.27 12.5 6.9 1 23 824 846 824 846 0.96 14 29 0.003 0.28 12.5 2.8 1 23 857 879 857 879 0.97 15 29 5.3e-05 0.0049 18.0 2.0 1 23 887 909 887 909 0.98 16 29 0.00017 0.016 16.4 0.3 2 23 929 951 928 951 0.97 17 29 0.98 90 4.6 0.3 1 23 969 991 969 991 0.90 18 29 0.013 1.2 10.5 3.5 1 23 998 1020 998 1020 0.97 19 29 0.011 0.96 10.8 3.7 2 23 1031 1053 1030 1053 0.95 20 29 0.014 1.3 10.4 0.2 2 23 1076 1097 1075 1097 0.95 21 29 1.7 1.5e+02 3.8 2.8 2 23 1140 1162 1139 1162 0.93 22 29 0.0019 0.17 13.1 0.2 2 23 1178 1199 1177 1199 0.95 23 29 0.13 12 7.3 3.2 3 23 1207 1227 1205 1227 0.96 24 29 0.022 2 9.8 1.4 2 23 1238 1260 1237 1260 0.95 25 29 0.18 17 6.9 3.3 2 23 1277 1295 1277 1295 0.90 26 29 0.3 27 6.2 1.9 2 21 1299 1318 1298 1319 0.94 27 29 0.62 57 5.2 1.3 2 23 1368 1389 1367 1389 0.93 28 29 0.003 0.28 12.5 0.5 2 23 1400 1422 1399 1422 0.95 29 29 6 5.5e+02 2.1 1.2 2 19 1460 1477 1459 1480 0.89
Sequence Information
- Coding Sequence
- ATGAAGCCAGTACCCAAGAATCAAGAACACTTGCATTCAAGCACAATCTTAATAAACAGTACTGTAACAAATACGATTTACGAAGGTGACGGGCTGCCTGACAAGGTGTGCTCGGAGTGCATACAGAAACTTAGCGGTGCGCACATCTTCAAACAGCAGTGTGAGCGAGCTGACCAGGAGCTACGCCGCAACTATGTGCCGCCACCGGGATTCAGCATCAGCCCGCCGCCACCCAACAGACAGAGCAGTGATTCCGCCTTTTCAAATCATACTGACTCGTCGAACTTGACCAAAACCCCGTCCTCCATCGAAGATAAACTAACTCCCGCCACAAGGACCCGGAAACGTAGCATAGACAGTGTCGACAATGTATCCACTGGTGGTGCGTCCAGCGATTACAGACCCAGCGCGCCCTCCAAACGCGTCGAGGAACTCAGACGCACCCACAAGAGACCTAAAAGACTGTCAGGACACGTCACGCATTTAGATTCAGATTTCGAAGACAACAACGCCTCGTACTTAGCCGAAACAGATTCCGACGAGCCCGTACTTAATAGCTTCAATTGTGATCAATGCCCCAAACACTACCAATCTCAAAGAAGTCTCTCCAACCACAAGAGGGTACACGACAAAAAAGAGAGTCTTGGTGAAAACGCCCTCGTTGATGTACCGCTGATGACAGAGGATGCGACTGACGTAGAGGACAAACTGAAATGTGACAAATGTGGAAAGACATTCAAGCTAAAGATCATGTTGAATCGTCATCACGAAATATGCAGTAAGATTACAAATCCCGTCAAGACACCACAGAAAGAGTTGCTGATCTCCTTGGAACCTATCGACGGCATGAAGAACCGGAACATTGTGTGTGAAATATGCACCGCTAAGTTCAAGACTGTTGACAATTTGGCAAAGCATATGAAGGTGGTACATGCTGCCATGTTGAAAAGAGAAGATGTGGATAAACGGGAAAATGGAAAGGTGTCAGTTCCGTGCATGTTCTGCCGCAAGACGTTCGACGATTACTATGTCCACAGTGCACATTTCAACAAGTGTCCGAAAAGGGACGACGCCTTGCCATATGAGTGTCCTGTTTGTAAGAAAGTGGTGTCGAGAAAGTACACTTATTTCCAACATATTAAAAACATGCACTTTGAGGCTCGGATGCCGCTGATGAATTCTGTGGAGCCTATGGCACATGAGTTCCATGAGTGTAGGATGTGCTTCAAGAAATTACCCTCCCAAGATTTGCTGATCACCCATTTGGCAGCGCACATGTCGAATATCGATGAAAATGATGGTGGAGCTGACAATGAATCTAGAGCAAGCACCTTAGACGACGGTGCATCTATCCAATCAGTGCATAGCCAATCTCAAACTCCTCCTGGTCTATATAAATGTGCCACATGTGACAAAGATTTCAAATACAAGAAAGCTCTTCAGACACACGAGGCTAAGTGTCATTCAGAGGTCCCTGTGAGAGTAAAGACAGAACCTCCTGACAAGGCGTCGACGAGTCTCTTGAGCGAGAAGGTCTACAAGCAGACTGAATCTGAATCTAGTCAAGAAGAGGACGACAACACTTGTGATATCTGCGAGAAACAGTTCTCATATCGTCGGGTCCTCCTTCAGCACAAGAGGACCAAGCACAACATGAGTTCAGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCTGTACGGTGCCTTATCTGCGACCTCGACATGAAGGTCGGAGCAATCAACGAACATAACCAAACACATATATCGAAGAACATGAAGCCCAGAAACCTGTATACCTGCACAGAATGCGAGGATACCTTCAAGAGCTGTTCTGCTCTCGCTAACCATATAAAGCTGATTCACAGACTAAAACAAAAGCGGATCGAACATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGGATCCAGAGTCGCAACGACTTTGGTGAGGTTCCAGGCGACAGCAAGGCGCTAGTGGATCTGAGCGGCTTCACCTGTCCCATTTGTAGCAAGAAGATGCCGACCCTCATATCTTTGAAGAGGCACGTCAACTGGCATACCAATGTTGGTAAGAATATCGAGAAGAAGTACGAGTGTTGCATCTGTAAGGAGTCCTTCAAGTTCCTCTGCCACTACAAGATCCACATGCGGGAGCACTACCACGACACGAACCTGGACCCGAAGCACCTCACGTGCACCATCTGCGGACGCCGCAGTAAGAATCTCCGCGCCGCGCAGGCGCACATGACTTACCACAAACAGACGCGCTTCCAAAACAAAGACTACCAATGCTCAATCTGCGAAAGAGTCTTCCAACACCGCAAGGTCTACCTCTCACACATGGCTATACATTTCAAAAAAGGCGACAGCGTGCTCAACACCGTCGTGGGCGACGTCATGCCCAGCACCGCCGACAAAAAGATCTTCGACGGCACGCACACCTGCCACTACTGCGGCAAAGTCTGCGATTCTGAAAACTCCCTCAAACATCATCTAATCTGGCACACCTCCAAATCTTTCTTGTACGGCGCCCGCCACGAGTGCACCATCTGCAAAGTGAAGTTCACTAACAAACGAAGGCTAGAACTCCACACCCGGGCCCACTACGAAGATGAGAACGGTCCGTACAAGTGCACCATCTGCGGCAAAGGGTACACCCACGAAGGCTATTACCAAAAACATGTCAAAGGACACAACTTCGACCATCAGTCCCACAAAAAAAGGATCGACAAAATAAGGAAGGATAAAGTTAAATGTCCAATATGTACGCGGTTTTACCCTGACTTGGCAAAGCTGATCCGGCACTTGCGACGCACGCACCCCGAGAGCAAGATGATCAAGGCCGACCCCGACGCCCCGCCAGCTCTCTACTACTCTTGTAAGTTGTGCGCCAAAGTATTTCTAGACGAGCGAAGATTGCAGTCCCACGAGGAAGCTCATTTAAGAAAGCCAGAGTTCTTTAAATGCAAGTTCTGTGGAAAGAAATACATATCGCTCAAAAACCACACTGCCCACATAAAGGGTCACTTGGCGCAGAAACATTACGACAATCCGCTGAAGTGTTCGCACTGTGACGAGACGTTCGTGAAGGGCTACGGGCTGCACCATCACCTGCGCGACGCACACGACATCAACGAGAGCTGGATCGCGGACTGCACGGAACAGGCGCTCACTGGCCCGCTGAAGGACCTACAGTGCTCCATATGTATGAAGGTCCTCGCCAGCAAAGGCAACTACGAGCGACACATCGACTACCACAACTCTTTGAGATGTAACTACTGCTTCGATTACTTCAGTTCTCTCAGGTTCCTAGAAGGACATCTGGTGTTCTCGTGCGAAAAGAAAAACCTTTTAGGCGATACCGAAGTTTACCCTAAGAAAGTGAAGTGCAACATTTGTTACAAAGCATTCCATGTTCAAGTGAAGCTGGACTGCCACTTGCGCGTGCAGCACGGCATCATAGTAGACAGGCAGCAGAGAGCAGGCAAACAAGAAATTGTCTGTGATTATTGCTTTAGAGTTTTTGAAAACGAGGATGCCCTAACTACTCACAAGATTTACCATCGCACGGTTGGCTATTACGGGTGTTTGTACTGCCCAAGGAAGTTTAGCACGTTGACCGTGTATCGGAAACACAAGAATCACCATATGGCGCAGCACAATGTAGAGAACCCGACTAAATGCGAACATTGTGACGAGACGTTCGTCGCTTTCAGAGAAATGATATACCACATGAGGGACAAACACGGAGATGACAAGGAATGGTTCACAGAGCCCAAGGAGTCCATCGAGGAGACCTGCCCCATCTGTAACAAACGGTTCTACAATCTTCACAAACATTTGACTTATCACGAAGAAAACAAGTGCAAGAAATGCAACGAATATTTCTACTCCAGGGCGGACTTCGATAGTCATCTTTGCGCCATTGAAAGCGATGACGAAAGCACGGTATATATGGGTAACGAGGTCAAGTTCCAGTATGAGGAGTGCAAGTTCTGCTTCAAACCTATCACCAAGAAGAGCACTAAGCGGTTACACGACCAGATACACAAGGGCTCTGGCTCTATATCCTGTAGGTTCTGCTCATTTAAGTTTAAAACTATGGACGCTTTTAATATACACGCTTTCTCTCATCGAAGCAGAAAATACACTAAGAAGCCGATAAAATGTCGGAAATGCGGCGAGAAGTTCGTTAAATACGGACCGTTCATAAAGCACATGAAGTTAATTCACAAGTCAACAAAGAAGATTCATTACAGAGCGATTGTGAAGCCGGAGAAATGTGTCGTTTGTGGAGACGACTTCCCCAATCTTCACAACCATTACCGCGCTCACCTGCTGAATCAGTGCCAGGGCTGTCTCAAATACTTTACTTCGTACAAGGCGATATCTACGCACGAGTGCGACAAAGAGGACTCCGACCCGTCGAAAGTGTTCACAAGCAACGCGAACTTGACCGAGCTGATAAATACGTATGTTCCTAAAGACGAGAAGGATGATGAGAAGTATTACGGCCACACCGACGACGAGGATGACGAAGTTGTACCACAAGTATTTGGGGAAGAGGAGGCGAGTCAGGAGAGTAAAGACATACCTATGATCCAGTCGCCGATAATATCTGATGTACTCTCGCTGTTCAAGGTGGAGCTTAATGGGATAGGTCAGGTGGAAGGTGCAGTGGAAAACGTGGAGGACGTAGTCACTATAACCGATGATGAGTCGGTGGATGTCGATAGTTCCGTTAACCCAGTTGTCTTTGTTATAGATGACGATTAG
- Protein Sequence
- MKPVPKNQEHLHSSTILINSTVTNTIYEGDGLPDKVCSECIQKLSGAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDSSNLTKTPSSIEDKLTPATRTRKRSIDSVDNVSTGGASSDYRPSAPSKRVEELRRTHKRPKRLSGHVTHLDSDFEDNNASYLAETDSDEPVLNSFNCDQCPKHYQSQRSLSNHKRVHDKKESLGENALVDVPLMTEDATDVEDKLKCDKCGKTFKLKIMLNRHHEICSKITNPVKTPQKELLISLEPIDGMKNRNIVCEICTAKFKTVDNLAKHMKVVHAAMLKREDVDKRENGKVSVPCMFCRKTFDDYYVHSAHFNKCPKRDDALPYECPVCKKVVSRKYTYFQHIKNMHFEARMPLMNSVEPMAHEFHECRMCFKKLPSQDLLITHLAAHMSNIDENDGGADNESRASTLDDGASIQSVHSQSQTPPGLYKCATCDKDFKYKKALQTHEAKCHSEVPVRVKTEPPDKASTSLLSEKVYKQTESESSQEEDDNTCDICEKQFSYRRVLLQHKRTKHNMSSGHKRAKIYLKDCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCTECEDTFKSCSALANHIKLIHRLKQKRIEHTVNPSDFCEVVVAKAEPLDWIQSRNDFGEVPGDSKALVDLSGFTCPICSKKMPTLISLKRHVNWHTNVGKNIEKKYECCICKESFKFLCHYKIHMREHYHDTNLDPKHLTCTICGRRSKNLRAAQAHMTYHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHFKKGDSVLNTVVGDVMPSTADKKIFDGTHTCHYCGKVCDSENSLKHHLIWHTSKSFLYGARHECTICKVKFTNKRRLELHTRAHYEDENGPYKCTICGKGYTHEGYYQKHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRFYPDLAKLIRHLRRTHPESKMIKADPDAPPALYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHTAHIKGHLAQKHYDNPLKCSHCDETFVKGYGLHHHLRDAHDINESWIADCTEQALTGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLVFSCEKKNLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRVQHGIIVDRQQRAGKQEIVCDYCFRVFENEDALTTHKIYHRTVGYYGCLYCPRKFSTLTVYRKHKNHHMAQHNVENPTKCEHCDETFVAFREMIYHMRDKHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEENKCKKCNEYFYSRADFDSHLCAIESDDESTVYMGNEVKFQYEECKFCFKPITKKSTKRLHDQIHKGSGSISCRFCSFKFKTMDAFNIHAFSHRSRKYTKKPIKCRKCGEKFVKYGPFIKHMKLIHKSTKKIHYRAIVKPEKCVVCGDDFPNLHNHYRAHLLNQCQGCLKYFTSYKAISTHECDKEDSDPSKVFTSNANLTELINTYVPKDEKDDEKYYGHTDDEDDEVVPQVFGEEEASQESKDIPMIQSPIISDVLSLFKVELNGIGQVEGAVENVEDVVTITDDESVDVDSSVNPVVFVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- -
- 80% Identity
- -